ID:

dsi_2103

 Coordinate:

2r:3176440-3176694 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.0 -5.9 -5.8 -5.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AGAGATAGTATTAGTGTCATTCATTGAAACTGATTGATTAAACTGCCAAGGTAAAAAAGATACACACACACATGTGCGTGTTCCAGGAGAGCAACACAATCATTGCAGACGCAGAGGCCAACAGATGTTGTTGATGTCTTAGCGGTATATTTGGAGTAAGAATTTGTAATGAATACCCTCGCTTTTGCTAGTTTTCTTTTTTGACACTACGGAGAATACATTTTGCATCGCGAATACGAAAAGCTGCAGGTCGTGTGGCTGGTTACTGCTTAGTTTTTTGTTCTCCTTATTAATCCTCAGAACGTTTATTATCGATAAGCTAGTGAAAAATATTAGCGTACGTGCGCCACTCTCC
***********************************************************************************************************************************************************.........((...........(((........((((..((......)).))))..)))...........))******************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 M023
head
 SRR902008
ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
..................................TGATTAAACTGCCAAGGTAAAAAAGA....................................................................................................................................................................................................................................................................................................... 26 0 1 3.00 3 1 0 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................GTAAGAATTTGTAATGAA...................................................................................................................................................................................... 18 0 1 3.00 3 0 0 0 0 0 3 0 0 0 0 0
.........................................................................................................................................................................................................TGACACTACGGAGAATACATTTTGCA................................................................................................................................ 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGATGTCTTAGCGGTATATTTGGAGTAA.................................................................................................................................................................................................... 28 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGACACTACGGAGAATACATTTTGCAT............................................................................................................................... 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...GATAGTATTAGTGTCAT............................................................................................................................................................................................................................................................................................................................................... 17 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
........................................................................................GAGCAACACAATCATTGCAGACGCAGA................................................................................................................................................................................................................................................ 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................GAAGTTCGTGTGGCAGGTTA.......................................................................................... 20 3 8 1.38 11 0 11 0 0 0 0 0 0 0 0 0
...................TTCATTGAAACTGATTGATTAAACTGC..................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................TCTCCTTATTAATCCTCAGACCGTT................................................. 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TAAGAATTTGTAATGAATA.................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................CAACACAATCATTGCAGACGAAGA................................................................................................................................................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GAGAATACATTTTGCATCGCGAATACGAA................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................TCCAGGAGAGCAACACAATCATTGCAGA...................................................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................TACGAAAAGCTGCAGGTCGTGTGG................................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................TGAAACTGATTGATTAAACTGCCAA.................................................................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TCGCGAATACGAAAAGCTGCAGGTCGTG.................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TTAGCGGTATATTTGGAGTAAGAAT................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
........................TGAAACTGATTGATTAAACTGCCAAGG................................................................................................................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TGCAGACGCAGAGGCCAACAGATGT................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TACGGAGAATACATTTTGCATCGCGA.......................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TGCAGACGCAGAGGCCAACAGATG.................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................GACGCAGAGGCCAACAGATGTTGTTGA............................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..................................TGATTAAACTGCCAAGGTAAAAAAAGA...................................................................................................................................................................................................................................................................................................... 27 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ATCGCGAATACGAAAAGCTGCAGGT........................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................TTAATCCTCAGACCGTTTATTATCGA........................................ 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TTTGACACTACGGAGAATACATTTTGCA................................................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TACGGAGAATACATTTTGCATCGCGAA......................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TTGGAGTAAGAATTTGTAATG........................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................TCCAGGAGAGCAACACAATCATTGCA........................................................................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................ATTTGTAATGAATACCCTCGC............................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................TGCAGGTCGTGTGGCTGGTTACTGC...................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................TTGATTAAACTGCCAAGGTAAAAAAGA....................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................AGAGCAACACAATCATTGCAGACGCAGA................................................................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................AGTAAGAATTTGTAATGAATACCCT................................................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................TTTGGAGTAAGAATTTGTAATGAA...................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................TCTTTTTTGACACTACGGAGA............................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................CGAAAAGCTGCAGGTCGTGTG.................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................TTGTAATGAATACACACACTT........................................................................................................................................................................... 21 3 7 0.57 4 0 0 0 0 4 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................AAACTATTAGCGTTGGTGCGC........ 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0
.......................................ATACTGCCAAGGTCAAGAAGA....................................................................................................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................................AGTTCGTGTGGCAGGTTA.......................................................................................... 18 2 7 0.29 2 0 2 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................ACGTTTATTATTGATAAGA................................... 19 2 13 0.15 2 0 0 0 0 0 0 0 0 0 0 2
.........................................................................................................................................................................................................................................................GTCGTGTAGTTGGTTA.......................................................................................... 16 2 20 0.15 3 0 0 0 0 0 0 0 0 0 0 3
...............................................................................................................................TTGGTGATGTCATAGCG................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................ATGTAGGTGTTCCAGGA........................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

TCTCTATCATAATCACAGTAAGTAACTTTGACTAACTAATTTGACGGTTCCATTTTTTCTATGTGTGTGTGTACACGCACAAGGTCCTCTCGTTGTGTTAGTAACGTCTGCGTCTCCGGTTGTCTACAACAACTACAGAATCGCCATATAAACCTCATTCTTAAACATTACTTATGGGAGCGAAAACGATCAAAAGAAAAAACTGTGATGCCTCTTATGTAAAACGTAGCGCTTATGCTTTTCGACGTCCAGCACACCGACCAATGACGAATCAAAAAACAAGAGGAATAATTAGGAGTCTTGCAAATAATAGCTATTCGATCACTTTTTATAATCGCATGCACGCGGTGAGAGG
********************************************************************************************************************************.........((...........(((........((((..((......)).))))..)))...........))*********************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
..................................................................................................................................................................................................................................................................................................ATTAGGAGTCTGGCAAATA.............................................. 19 1 1 2.00 2 0 2 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................ACAAAAGGACAAATTAGGAGTC....................................................... 22 3 1 1.00 1 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................................................................AAGAGGAATAATTAGGAGTC....................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................CTATGTGTGTGTGTACACGC..................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................TGTGATGCCTCTTATGTAAAACGT................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................TAATTAGGTGTCTTGGATATAA............................................. 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................................................TGACGATTCAAAGAACTAGAGGAA................................................................... 24 3 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................................................................................................CGTCTCGGGTTGTCTA..................................................................................................................................................................................................................................... 16 1 4 0.50 2 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................AAAAAACAACAGGAATAA................................................................ 18 1 4 0.25 1 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................................................................................................................................TTTATAGGCGGATGCACGCG........ 20 3 6 0.17 1 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................................................................................................................................AATAGTAGCTATTCGA.................................. 16 1 8 0.13 1 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:3176390-3176744 + dsi_2103 AGAGATAGT----------------------------ATTAGTGTCATTCATT---GAAACTGATTGATTAAACTGCCAAGGTAAAA-------------------------------------------------------------------AA-----------------------------------GATACACACACA----CATGT-----GCGTGTTCCAGGAGAGCAACACAATCATTG-CA------GACGC---------------AGAG------GCCAACAGATGTTGTTG-ATGTCTTAGCGGTATATTTG------------GAGTAAGAATT--TGT-------AATGAATACCCTCGCTTTTGCTAGTTT-TCT----TT-TTTGACACTACGGAGAATACATTTTGCATCG-CGAATACGAAAAGCTGCAGGTCGTGTG---GCTGGTTACTGCTT--------AGTTTTTT-----G--TT--------------------------CTCCTTATTA---ATCCTCAGAACGTTTATT-ATCGATAAG-CTA---GTGAAAAATATTAGCGTACGTGC-----GCCACTCTC-----------C
droSec2 scaffold_109:20229-20580 + AGAGATAGT----------------------------ATAAGTGTCATTCATT---GAAACTGATTGATTAAACTGCCAAGGTAAAA-------------------------------------------------------------------AA-----------------------------------GATACACACACA----CATGT-----GCGTGTTCCAGGAGAGCAACACAATCATTG-CA------GACGC---------------AGAG------GCCAACAGATGTTG----ATGTCTTAGCGGTATATTTG------------GAGTAAGAATT--TGT-------AATGACTACCCTCGGTTTTGCTAGTTT-TCT----TT-TTTGACACTACGGAGAATAAATTTTGCATCG-CGAATACGAAAAGCTGCAGGTCGTGTG---GCTGGTTGCTGCTT--------AGTTTTTT-----G--TT--------------------------CTCCTTATTA---ATCCTCAGACCGTTTATT-ATCGATAAG-CTA---GTGAAAAATATTAGCGTACGTGC-----GCCACTCTC-----------C
dm3 chrXHet:75267-75443 - AGAGATAATTCGAGT----TAAATTCGCAACT--AGTATTAGTATCATTCATT---GAAACCGATTTATTAAACTGCCAAGGTAGAC-------------------------------------------------------------------AA-----------------------------------G--ACACACACA----CATGT-----GCGTGTTTCCGGAGAGCATCACAATCATTG-CA------GACCT---------------AGAG------GCCAACAGCTGTTGTTG-ATGTCCTAGCGGTATATTTA------------CGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4690:18734970-18735350 - AGAGATAATTTGACG----AAATTTCGCAATT--CGTATTAGTATAAATTATTATATAAACCGATTGTTTAAATTTCCCAGGTAGTA-------------------------------------------------------------------AAGATCTTAGAACCAGTTGAAAACGAAGTTGGTCA-----ACACACACA----CATGT-----GCGTGATCCAGGAGAGCGACACAAACA----CA------GACGC---------------AGGA---G---CTACAAGCTGTTGTTGAATGGCTTAGCGGTACATTTG------------GAGTAAGCATT--CGT-------AATCAATATATTCGTTTTTGCACGT----AT----TT-TTTGGCATTCGGGAGAATAATTTATTCAATGG-AAATATGAAA-ACTGCAT---------------------------------ATTTTTTT-----G--TT--------------------------TTCCTTCTTGTGGTTCCCCTGACGGTTTATTGACCGACAAG-CTA---GTGAAAAATAATAGCGTACGTGC-----GC-----TC-----------C
droYak3 chrXh:121490-121898 + AAATATATTTTGAGG----AAGATTCGGAATT--AGTATTAGTATATAACATT---TAAATCAATTGATTTAATTGCCCAGGTAGTA-------------------------------------------------------------------GAGATCTTAGAACCAGTGCAAAACGAAGTTGTCAAC----ACACATACA----CATGT-----GCGTGTTTCTGGAGAGCGACACAGTCA----CA------GACGC---------------AGGA------CCCACCAGCTGTTGTTGGGTGGTTTAGCGGTACATTTG------------GAGTAAGCATT--CGT-------AATCAATACGTTCGTTTTTGCTAGATT-TCT----TT-TTTGGCATTCTAGATAATACATTATTCACTG-CAAATATTAAAAGTTACAGGTCCTGTA---GCCGGTTAATGCTT--------AGTTTTTT-----G--TC--------------------------CTCCTTCTTGTTTGTC-CCTGACGGTTTATTGACCGACAAG-CTA---GTGAAAAATAATAGCGTACGTGC-----GCCACTCTC-----------C
droEug1 scf7180000408987:23797-24190 + ACAGGTAAAACGAAG----AAAATTCGCCATA--AT-GC------------------------TAAGATG-------------------AAGTGCAATTG------------------------------AATAATGTAC-------------G-AAACCAAAAAACAAGTGCAACACGGAGTTCGTC------GCGCACACA----CATTA-----AAGCGTTCCATGAGATCTACACAAACG----CAGGA---GC------------------AAGA---GTGACCACCAGTTGTTGTTGGGGGCTCTAGCGGTATATTTA------------GGGTAAGCAAC--TACA-ATCGCAATCAATAAGCATTATTTTAATAATC--TCT----TT-TCGGACTTTCTGTTTAATTAATTATTAAATGGCGAATAGCAAAAACTGTAGGTCCTGTT---TTTTGTTGTTAATT--------GGCCATAT-----A--------------------------GCCTT---TTTTTGTTGAT---CTGATGGTTTATTTACCGACAAC-ACA---ATAGAAAAGAAAAGCGTACGTGC-----GCGGTTCT------------C
droBia1 scf7180000302421:1217427-1217470 - TCCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATGACGTTTAAT-AACAATAAT-CCA---GTGAATAATATAAAC----------------------------------
droTak1 scf7180000415769:129899-130342 - AAAGATTAATCTGGAATATAAAATTCGCCATA--AG-AC------------------------TAGTGGC-------------------AAGTGACAATGTTTAATTAGCATTTAGACA-AATTCCTAAAAAAAAAGTGAGGGAAATAAGGAA-GGGAACAAGAAACAAGTGCAACACTGAGTTGCTTACT--CACGCACACA----CATAA-----CCGCGTGCCAAGAGAGCGACACACAAA----CAGGA---GC------------------CGGA---GTGACGACCAGCTGTTGTTGTATGGCATAGCGGTACATTTG------------GGGTAAGCAAT--CGCAAATCTGAATCAATACATTCTATTTAGTTTGTCTCTCT----TT-TTTCCCATTCCGTCGAATGAATTATTTATTTGCA-------AAAGGTTCAGGTTCTTGT---TTCTGTTTCCGCTT--------GGCTCTCT--------------------------------GCTTA---TTTGTGGTGATCCGGTGACGGTTTAATGACCGACAATACAA---GTGAAAAATAGAAGCGTACGTGC-----GCCGCTCTC-----------A
droEle1 scf7180000491087:432632-433100 + TAAGATAAATCGGGA----AAAATTCGCAAAA--CT--------------------------GA----------------------ATAAAAGGAGATTGTTTATTTATCAATTAAAAATAATTGCCAAAAATAAAGTGA-------------G-ATTACAAGGGACAAGTGCAA-TCGGAGTTGGTAGCT----TACGCACACAAGCGTATTCGTATTGAATTCCAGGAGAGCGACACGCACAC--ACAGGTGCTGA-GC---------------AGGA---GCCACGACCAGCTGTTGTTGGATGGCATAGCGGTACATTTT------------GGGTAAGCAAT--CGCA-GTCGCAATCAATACGCTCTATTTTGTTAGTCTCTCT----TTATTTGGTTTTCAGTCAAATCAATTATTCAATG-CC-------AAAGCTGCAGGTCCTTTT---CCCTGTTGCCGCTT--------GACTCTTTCCCTCCTTCTCTCTCGCTCTCTTTCTCTCTATGC------TTCTTGTTGATCCGCTGACGGTTTATTGACCGACAAG-CAA---GGGAAGAAGAAAAACGTACGTGCGGTGCGCCACTCTC-----------C
droRho1 scf7180000778808:7237-7681 - TAAGATAGTTCGGGA----AAAATTCGCAAAAAAAG-AC------------------------TA------------------------AAACGAGAGTGTTTAATCAGCAATAAAATA-AATTGCCAAAAATAAAGTGA-------------G-AGTAAAAGGAACAAGTGCAA-GCGGAGTTGCTCGGC----CACGCACACAAGCGTAT------TGAATTCCAGTAGAGCGACACGCACAC--ACAGGTGCAGAGGC---------------AGGA---GCGACGACCAGCTGTTGTTGGATGGCATAGCGGTACATTTG------------GGGTAAGTAAT--CGC-------AATCAATACGCTCTATTTTGCTTGTTTCTCT----TTCTTTGGCTTTCTGTTGAATCAATTATTCAATGGC--------AAAGCTGTAGGTCCTTCCTAATCCTGTTGCCGCTT--------GGCTCTCTCCC--------------TC------TCTCTATGCTTC---TTCTTGTTGATCCGCTGACGGTTTATTGACCGACAAGACAA---GTGAAAAAGAAAAGCGTACGTGCGGTGAGCCACTCTC-----------C
droFic1 scf7180000453495:216910-217250 - AAAAGCAAAGGCA------------------------------------------------------------------------------ACGAGTGGGTTTTGTTAATAACTGAATA-GGCTCTCAAAAACGAAGTGA-------------A----------------------------TTAACAAC----CCACATAT-----------------------------------------G----GA------CATACGCGAATTTCGGAAGCAGAA---GCGATGACCAGCTGTTGTTCGACTGCATAGCGGTATCATTT------------TGGTAAGCACC--TGC-------AATCAATACGCTCTGTTTTGTTTGTCACTCC----TT-TTTGACTCTCCGCCGAAGTAATTATTCAATGG-------------CTGCAGGTATCGTT---TACTGTT-TCGCTT--------GGCTCTCT--------------------------------GCTTC---TTTTTGT--------TGACGGTTTATTGACCGACAAGCCCA---GTAAAAAGTA-AAGCGTACGTGC-----ACCACTCTACCCCTGCCTCTC
droKik1 scf7180000302610:747645-747990 + AAACACACACAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACACACA----CGCAT-----GGGAACTCCAAGAGAGCAACACAAACACCATCAGGA---GC------------------TGGAACAACGACGACCAGCTGTTGTAG--CCACATAGCGGTACACTTGGCCATTTCTGCGGGGTAAGC---------------AATCAATACGCTTTATTTTGTA--TCTCTCATTGCTTCTTTGC------CTGGCATTAATTATTCAATGGCAAATG--CAATGCAGCAAGTTCTGCT---TCCTGTTGCCGCCTCTAGAAGAAGCCCCCC-----C--CTCTCCC-CTTTCTTTATCTGCCTGC-----TTTGTTGTTGATCTGCTGACGGTTTATTGACCGACAAGACGACAAGTGAAAA-----AGCGTACGTGC-----GCCTCTCTC-----------C
droAna3 scaffold_13340:3943773-3943808 - T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTAAACGGTATTTATG------------GAATAAGGATT--TGT-------AAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396023:7044-7059 - AAAGATAATCTCA----------------------------TTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 Unknown_singleton_2887:3805-3874 - ACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACACA----CATGT-----GTGTATTCAAACAGACCG---CACTCA----CA------CACAC---------------AGA-------GCCATCAGATATGGTAG-ATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_8058:878-935 - AAAAAAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACAGAAG----CGCGT-----GCGTTTTCAACAACAAAAACAAAAGCAATA-GA------AAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004909:5074721-5074781 - TGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTTATAGGTATATTTT------------TAGTGAAAAAT--CAT-------AATGCATACCATAACCATTACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12958:3415890-3415962 + ACATAAAAATCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGGTGTGTG---GCCAGTTAATTCTT--------CCTTCTCT-----G--CC--------------------------CATTCTATCAC---TCATA----------------------------------------------------------------------AGTACCTT
droMoj3 scaffold_6540:542900-542979 - AGGTCTAGT----------------------------ATTCGGATGATGTGTT---GGAATTGTGTGGTGAAATGCCCAACACTGAA-------------------------------------------------------------------TA-----------------------------------CTCATACACTCA----CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGCAT
droGri2 scaffold_15110:465836-465959 + GAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTTG-GTGCTTTTCCCCTACACTCG------------GAAAAC--AATTGTGC-------TAAGAATTTCTACTTTTTAGAAATGTT-TTT----TT-TTTAATAGTAGGAATA--------------------------TTTGTACAAATTTTGAA---T---------------------------------------------------------------------------C---TCATA----------------------------------------------------------------------TCTAGAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGAGATAGT----------------------------ATTAGTGTCATTCATT---GAAACTGATTGATTAAACTGCCAAGGTAAAA-------------------------------------------------------------------AA-----------------------------------GATACACACACA----CATGT-----GCGTGTTCCAGGAGAGCAACACAATCATTG-CA------GACGC---------------AGAG------GCCAACAGATGTTGTTG-ATGTCTTAGCGGTATATTTG------------GAGTAAGAATT--TGT-------AATGAATACCCTCGCTTTTGCTAGTTT-TCT----TT-TTTGACACTACGGAGAATACATTTTGCATCG-CGAATACGAAAAGCTGCAGGTCGTGTG---GCTGGTTACTGCTT--------AGTTTTTT-----G--TT--------------------------CTCCTTATTA---ATCCTCAGAACGTTTATT-ATCGATAAG-CTA---GTGAAAAATATTAGCGTACGTGC-----GCCACTCTC-----------CSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................TGATTAAACTGCCAAGGTAAAA-------------------------------------------------------------------AA-----------------------------------GA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2613.00300001010001000000
..................................................................................................................................................................................................................................................................................................................................................GTAAGAATT--TGT-------AATGAA.................................................................................................................................................................................................................................................................1813.00330000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TGACACTACGGAGAATACATTTTGCA.....................................................................................................................................................................................................2612.00200000000000002000
.............................................................................................................................................................................................................................................................................................................TG-ATGTCTTAGCGGTATATTTG------------GAGTAA........................................................................................................................................................................................................................................................................................2812.00200000000000002000
...............................................................................................................................................................................................................................................................................................................................................................................................................TGACACTACGGAGAATACATTTTGCAT....................................................................................................................................................................................................2712.00200000000000002000
...GATAGT----------------------------ATTAGTGTCAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1712.00200000000002000000
......................................................................................................................................................................................................................................GAGCAACACAATCATTG-CA------GACGC---------------AGA.......................................................................................................................................................................................................................................................................................................................................................2712.00200000020000000000
...............................................TTCATT---GAAACTGATTGATTAAACTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................TAAGAATT--TGT-------AATGAATA...............................................................................................................................................................................................................................................................1911.00100001000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................GAGAATACATTTTGCATCG-CGAATACGAA.......................................................................................................................................................................................2911.00100000010000000000
...............................................................................................................................................................................................................................TCCAGGAGAGCAACACAATCATTG-CA------GA............................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAAAAGCTGCAGGTCGTGTG---G..................................................................................................................................................................2411.00100000001000000000
....................................................T---GAAACTGATTGATTAAACTGCCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TCG-CGAATACGAAAAGCTGCAGGTCGTG........................................................................................................................................................................2811.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................TTAGCGGTATATTTG------------GAGTAAGAAT....................................................................................................................................................................................................................................................................................2511.00100000000000010000
....................................................T---GAAACTGATTGATTAAACTGCCAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
.....................................................................................................................................................................................................................................................TG-CA------GACGC---------------AGAG------GCCAACAGATGT....................................................................................................................................................................................................................................................................................................................................2511.00100000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TACGGAGAATACATTTTGCATCG-CGA..............................................................................................................................................................................................2611.00100000010000000000
.....................................................................................................................................................................................................................................................TG-CA------GACGC---------------AGAG------GCCAACAGATG.....................................................................................................................................................................................................................................................................................................................................2411.00100000000000001000
................................................................................................................................................................................................................................................................GACGC---------------AGAG------GCCAACAGATGTTGTTG-A.............................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
.................................................................TGATTAAACTGCCAAGGTAAAA-------------------------------------------------------------------AA-----------------------------------AGA............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................ATCG-CGAATACGAAAAGCTGCAGGT............................................................................................................................................................................2511.00100000000000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................TTTGACACTACGGAGAATACATTTTGCA.....................................................................................................................................................................................................2811.00100000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TACGGAGAATACATTTTGCATCG-CGAA.............................................................................................................................................................................................2711.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................TTG------------GAGTAAGAATT--TGT-------AATG...................................................................................................................................................................................................................................................................2111.00100000000001000000
...............................................................................................................................................................................................................................TCCAGGAGAGCAACACAATCATTG-CA------..............................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................ATT--TGT-------AATGAATACCCTCGC........................................................................................................................................................................................................................................................2111.00100001000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGGTCGTGTG---GCTGGTTACTGC.......................................................................................................................................................2511.00100000001000000000
................................................................TTGATTAAACTGCCAAGGTAAAA-------------------------------------------------------------------AA-----------------------------------GA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
.....................................................................................................................................................................................................................................AGAGCAACACAATCATTG-CA------GACGC---------------AGA.......................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
.................................................................................................................................................................................................................................................................................................................................................AGTAAGAATT--TGT-------AATGAATACCCT...........................................................................................................................................................................................................................................................2511.00100000000001000000
................................................................................................................................................................................................................................................................................................................................TTTG------------GAGTAAGAATT--TGT-------AATGAA.................................................................................................................................................................................................................................................................2411.00100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TCT----TT-TTTGACACTACGGAGA.................................................................................................................................................................................................................2111.00100000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAAAGCTGCAGGTCGTGTG---...................................................................................................................................................................2111.00100000000000010000
droSec2
AGAGATAGT----------------------------ATAAGTGTCATTCATT---GAAACTGATTGATTAAACTGCCAAGGTAAAA-------------------------------------------------------------------AA-----------------------------------GATACACACACA----CATGT-----GCGTGTTCCAGGAGAGCAACACAATCATTG-CA------GACGC---------------AGAG------GCCAACAGATGTTG----ATGTCTTAGCGGTATATTTG------------GAGTAAGAATT--TGT-------AATGACTACCCTCGGTTTTGCTAGTTT-TCT----TT-TTTGACACTACGGAGAATAAATTTTGCATCG-CGAATACGAAAAGCTGCAGGTCGTGTG---GCTGGTTGCTGCTT--------AGTTTTTT-----G--TT--------------------------CTCCTTATTA---ATCCTCAGACCGTTTATT-ATCGATAAG-CTA---GTGAAAAATATTAGCGTACGTGC-----GCCACTCTC-----------CSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................AG------GCCAACAGATGTTG----ATG...........................................................................................................................................................................................................................................................................................................................1911.0010010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTT--------AGTTTTTT-----G--TT--------------------------CTCCTTA..........................................................................................2111.0011000
..........................................................................................................................................................................................................A----CATGT-----GCGTGTTCCAGG.........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.......................................................................................................................................................................................................................................................................................................................AGCGGTATATTTG------------GAGTAAGAAT....................................................................................................................................................................................................................................................................................2311.0011000
dm3
AGAGATAATTCGAGT----TAAATTCGCAACT--AGTATTAGTATCATTCATT---GAAACCGATTTATTAAACTGCCAAGGTAGAC-------------------------------------------------------------------AA-----------------------------------G--ACACACACA----CATGT-----GCGTGTTTCCGGAGAGCATCACAATCATTG-CA------GACCT---------------AGAG------GCCAACAGCTGTTGTTG-ATGTCCTAGCGGTATATTTA------------CGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................................................................CAGCTGTTGTTG-ATGTCCTAGCGG..................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................AGAGCATCACAATCATTG-CA------GAC...........................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................AGCTGTTGTTG-ATGTCCTAGCGGT.................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................ACCT---------------AGAG------GCCAACAGCTGT....................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................CATCACAATCATTG-CA------GACCT---------------AGAG------GC..............................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.......................................................................................................................................................................................................CACA----CATGT-----GCGTGTTTCCGG.........................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................ATTG-CA------GACCT---------------AGAG------GCCAA...........................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................CT---------------AGAG------GCCAACAGCTGTTGTT................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................GTTTCCGGAGAGCATCACAATCA..........................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CCAAGGTAGAC-------------------------------------------------------------------AA-----------------------------------G--ACACACACA----CATG...........................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................ATGT-----GCGTGTTTCCGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TGTTGTTG-ATGTCCTAGCGGTATATT............................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TCACAATCATTG-CA------GACCT---------------AGAG------GCC.............................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................ACA----CATGT-----GCGTGTTTCCGGAGAGC....................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................GCTGTTGTTG-ATGTCCTA......................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................CGATTTATTAAACTGCCAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................A----CATGT-----GCGTGTTTCCGGAGAGCATC.................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TATTAAACTGCCAAGGTAGAC-------------------------------------------------------------------AA-----------------------------------G--ACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TGTTGTTG-ATGTCCTAGCGGT.................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................ATTAAACTGCCAAGGTAGAC-------------------------------------------------------------------AA-----------------------------------G--ACACAC......................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................ACAGCTGTTGTTG-ATGTCC........................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................GCGTGTTTCCGGAGAGCATCA................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.....................................................................TAAACTGCCAAGGTAGAC-------------------------------------------------------------------AA-----------------------------------G--ACACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................CACACACA----CATGT-----GCGTGTTT.............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................AGAGCATCACAATCATTG-CA------GA............................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................ACACACACA----CATGT-----GCGTGTTTCCGGA........................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................TAAACTGCCAAGGTAGAC-------------------------------------------------------------------AA-----------------------------------G--ACAC........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................AGCTGTTGTTG-ATGTCCTAGCGG..................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................ATCATTG-CA------GACCT---------------AGAG------GCC.............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................TGTTG-ATGTCCTAGCGGTATATT............................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TCACAATCATTG-CA------GACCT---------------AGA.......................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................C-------------------------------------------------------------------AA-----------------------------------G--ACACACACA----CATGT-----GC...................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................ATTG-CA------GACCT---------------AGAG------GCCAACAGCTGT....................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...................................................................................................................................................................................................................................................ATTG-CA------GACCT---------------AGAG------GCCAAC..........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................AACAGCTGTTGTTG-ATGTCCTAGCGGTA................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TTCGAGT----TAAATTCGCAACT--AGTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................A-----------------------------------G--ACACACACA----CATGT-----GCGTGTTTCCGGA........................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................ACACACA----CATGT-----GCGTGTTTCCGGAGAGC....................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGT----TAAATTCGCAACT--AGTATTAGTATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TCATTG-CA------GACCT---------------AGAG------GCCAACAGC.......................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................CAGCTGTTGTTG-ATGTCCTAGCGGTA................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................ATGT-----GCGTGTTTCCGGAGAGCATC.................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGAGATAATTTGACG----AAATTTCGCAATT--CGTATTAGTATAAATTATTATATAAACCGATTGTTTAAATTTCCCAGGTAGTA-------------------------------------------------------------------AAGATCTTAGAACCAGTTGAAAACGAAGTTGGTCA-----ACACACACA----CATGT-----GCGTGATCCAGGAGAGCGACACAAACA----CA------GACGC---------------AGGA---G---CTACAAGCTGTTGTTGAATGGCTTAGCGGTACATTTG------------GAGTAAGCATT--CGT-------AATCAATATATTCGTTTTTGCACGT----AT----TT-TTTGGCATTCGGGAGAATAATTTATTCAATGG-AAATATGAAA-ACTGCAT---------------------------------ATTTTTTT-----G--TT--------------------------TTCCTTCTTGTGGTTCCCCTGACGGTTTATTGACCGACAAG-CTA---GTGAAAAATAATAGCGTACGTGC-----GC-----TC-----------CSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTGACCGACAAG-CTA---GT...............................................2011.0010001000
................................................................................................................................................................................................................................................................GACGC---------------AGGA---G---CTACAAGCTGT....................................................................................................................................................................................................................................................................................................................................2111.0010000010
..........................................................................................................................................................................................................................................................................................................TGTTGAATGGCTTAGCGGT.................................................................................................................................................................................................................................................................................................................1911.0010100000
................................................................................................................................................................................................................ATGT-----GCGTGATCCAGGAGAGC....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
................................................................................................................................................................................................................................................................................................................ATGGCTTAGCGGTACATTTG------------GA............................................................................................................................................................................................................................................................................................2211.0010000010
..................................................................GTTTAAATTTCCCAGGTAGTA-------------------------------------------------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
............................................................................................................................................................................................................................................CACAAACA----CA------GACGC---------------AGGA---...................................................................................................................................................................................................................................................................................................................................................1911.0010000100
droYak3
AAATATATTTTGAGG----AAGATTCGGAATT--AGTATTAGTATATAACATT---TAAATCAATTGATTTAATTGCCCAGGTAGTA-------------------------------------------------------------------GAGATCTTAGAACCAGTGCAAAACGAAGTTGTCAAC----ACACATACA----CATGT-----GCGTGTTTCTGGAGAGCGACACAGTCA----CA------GACGC---------------AGGA------CCCACCAGCTGTTGTTGGGTGGTTTAGCGGTACATTTG------------GAGTAAGCATT--CGT-------AATCAATACGTTCGTTTTTGCTAGATT-TCT----TT-TTTGGCATTCTAGATAATACATTATTCACTG-CAAATATTAAAAGTTACAGGTCCTGTA---GCCGGTTAATGCTT--------AGTTTTTT-----G--TC--------------------------CTCCTTCTTGTTTGTC-CCTGACGGTTTATTGACCGACAAG-CTA---GTGAAAAATAATAGCGTACGTGC-----GCCACTCTC-----------CSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................ATCAATTGATTTAATTGCCCAGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
droEug1
ACAGGTAAAACGAAG----AAAATTCGCCATA--AT-GC------------------------TAAGATG-------------------AAGTGCAATTG------------------------------AATAATGTAC-------------G-AAACCAAAAAACAAGTGCAACACGGAGTTCGTC------GCGCACACA----CATTA-----AAGCGTTCCATGAGATCTACACAAACG----CAGGA---GC------------------AAGA---GTGACCACCAGTTGTTGTTGGGGGCTCTAGCGGTATATTTA------------GGGTAAGCAAC--TACA-ATCGCAATCAATAAGCATTATTTTAATAATC--TCT----TT-TCGGACTTTCTGTTTAATTAATTATTAAATGGCGAATAGCAAAAACTGTAGGTCCTGTT---TTTTGTTGTTAATT--------GGCCATAT-----A--------------------------GCCTT---TTTTTGTTGAT---CTGATGGTTTATTTACCGACAAC-ACA---ATAGAAAAGAAAAGCGTACGTGC-----GCGGTTCT------------CSizeHit CountTotal NormTotal
No Reads
droBia1
TCCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATGACGTTTAAT-AACAATAAT-CCA---GTGAATAATATAAAC----------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AAAGATTAATCTGGAATATAAAATTCGCCATA--AG-AC------------------------TAGTGGC-------------------AAGTGACAATGTTTAATTAGCATTTAGACA-AATTCCTAAAAAAAAAGTGAGGGAAATAAGGAA-GGGAACAAGAAACAAGTGCAACACTGAGTTGCTTACT--CACGCACACA----CATAA-----CCGCGTGCCAAGAGAGCGACACACAAA----CAGGA---GC------------------CGGA---GTGACGACCAGCTGTTGTTGTATGGCATAGCGGTACATTTG------------GGGTAAGCAAT--CGCAAATCTGAATCAATACATTCTATTTAGTTTGTCTCTCT----TT-TTTCCCATTCCGTCGAATGAATTATTTATTTGCA-------AAAGGTTCAGGTTCTTGT---TTCTGTTTCCGCTT--------GGCTCTCT--------------------------------GCTTA---TTTGTGGTGATCCGGTGACGGTTTAATGACCGACAATACAA---GTGAAAAATAGAAGCGTACGTGC-----GCCGCTCTC-----------ASizeHit CountTotal NormTotal
No Reads
droEle1
TAAGATAAATCGGGA----AAAATTCGCAAAA--CT--------------------------GA----------------------ATAAAAGGAGATTGTTTATTTATCAATTAAAAATAATTGCCAAAAATAAAGTGA-------------G-ATTACAAGGGACAAGTGCAA-TCGGAGTTGGTAGCT----TACGCACACAAGCGTATTCGTATTGAATTCCAGGAGAGCGACACGCACAC--ACAGGTGCTGA-GC---------------AGGA---GCCACGACCAGCTGTTGTTGGATGGCATAGCGGTACATTTT------------GGGTAAGCAAT--CGCA-GTCGCAATCAATACGCTCTATTTTGTTAGTCTCTCT----TTATTTGGTTTTCAGTCAAATCAATTATTCAATG-CC-------AAAGCTGCAGGTCCTTTT---CCCTGTTGCCGCTT--------GACTCTTTCCCTCCTTCTCTCTCGCTCTCTTTCTCTCTATGC------TTCTTGTTGATCCGCTGACGGTTTATTGACCGACAAG-CAA---GGGAAGAAGAAAAACGTACGTGCGGTGCGCCACTCTC-----------CSizeHit CountTotal NormTotal
No Reads
droRho1
TAAGATAGTTCGGGA----AAAATTCGCAAAAAAAG-AC------------------------TA------------------------AAACGAGAGTGTTTAATCAGCAATAAAATA-AATTGCCAAAAATAAAGTGA-------------G-AGTAAAAGGAACAAGTGCAA-GCGGAGTTGCTCGGC----CACGCACACAAGCGTAT------TGAATTCCAGTAGAGCGACACGCACAC--ACAGGTGCAGAGGC---------------AGGA---GCGACGACCAGCTGTTGTTGGATGGCATAGCGGTACATTTG------------GGGTAAGTAAT--CGC-------AATCAATACGCTCTATTTTGCTTGTTTCTCT----TTCTTTGGCTTTCTGTTGAATCAATTATTCAATGGC--------AAAGCTGTAGGTCCTTCCTAATCCTGTTGCCGCTT--------GGCTCTCTCCC--------------TC------TCTCTATGCTTC---TTCTTGTTGATCCGCTGACGGTTTATTGACCGACAAGACAA---GTGAAAAAGAAAAGCGTACGTGCGGTGAGCCACTCTC-----------CSizeHit CountTotal NormTotal
No Reads
droFic1
AAAAGCAAAGGCA------------------------------------------------------------------------------ACGAGTGGGTTTTGTTAATAACTGAATA-GGCTCTCAAAAACGAAGTGA-------------A----------------------------TTAACAAC----CCACATAT-----------------------------------------G----GA------CATACGCGAATTTCGGAAGCAGAA---GCGATGACCAGCTGTTGTTCGACTGCATAGCGGTATCATTT------------TGGTAAGCACC--TGC-------AATCAATACGCTCTGTTTTGTTTGTCACTCC----TT-TTTGACTCTCCGCCGAAGTAATTATTCAATGG-------------CTGCAGGTATCGTT---TACTGTT-TCGCTT--------GGCTCTCT--------------------------------GCTTC---TTTTTGT--------TGACGGTTTATTGACCGACAAGCCCA---GTAAAAAGTA-AAGCGTACGTGC-----ACCACTCTACCCCTGCCTCTCSizeHit CountTotal NormTotal
No Reads
droKik1
AAACACACACAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACACACA----CGCAT-----GGGAACTCCAAGAGAGCAACACAAACACCATCAGGA---GC------------------TGGAACAACGACGACCAGCTGTTGTAG--CCACATAGCGGTACACTTGGCCATTTCTGCGGGGTAAGC---------------AATCAATACGCTTTATTTTGTA--TCTCTCATTGCTTCTTTGC------CTGGCATTAATTATTCAATGGCAAATG--CAATGCAGCAAGTTCTGCT---TCCTGTTGCCGCCTCTAGAAGAAGCCCCCC-----C--CTCTCCC-CTTTCTTTATCTGCCTGC-----TTTGTTGTTGATCTGCTGACGGTTTATTGACCGACAAGACGACAAGTGAAAA-----AGCGTACGTGC-----GCCTCTCTC-----------CSizeHit CountTotal NormTotal
No Reads
droAna3
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTAAACGGTATTTATG------------GAATAAGGATT--TGT-------AAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AAAGATAATCTCA----------------------------TTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
ACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACACA----CATGT-----GTGTATTCAAACAGACCG---CACTCA----CA------CACAC---------------AGA-------GCCATCAGATATGGTAG-ATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AAAAAAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACAGAAG----CGCGT-----GCGTTTTCAACAACAAAAACAAAAGCAATA-GA------AAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTTATAGGTATATTTT------------TAGTGAAAAAT--CAT-------AATGCATACCATAACCATTACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
ACATAAAAATCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGGTGTGTG---GCCAGTTAATTCTT--------CCTTCTCT-----G--CC--------------------------CATTCTATCAC---TCATA----------------------------------------------------------------------AGTACCTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------CCTTCTCT-----G--CC--------------------------CATTCTATCAC---TC.................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
..ATAAAAATCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGGTGTGT.......................................................................................................................................................................21200.051000000000010000000000000000000000000000000000000000000000000000
droMoj3
AGGTCTAGT----------------------------ATTCGGATGATGTGTT---GGAATTGTGTGGTGAAATGCCCAACACTGAA-------------------------------------------------------------------TA-----------------------------------CTCATACACTCA----CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGCATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....CTAGT----------------------------ATTCGGATGATGTGTT---GG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.357700000
...TCTAGT----------------------------ATTCGGATGATGTGTT---GG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.255010013
....CTAGT----------------------------ATTCGGATGATGTGTT---G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.153300000
.....................................................................................AA-------------------------------------------------------------------TA-----------------------------------CTCATACACTCA----CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGC..2480.131100000
....CTAGT----------------------------ATTCGGATGATGTGTT---GGAATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
...TCTAGT----------------------------ATTCGGATGATGTGTT---GGAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
....CTAGT----------------------------ATTCGGATGATGTGTT---GGAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
....CTAGT----------------------------ATTCGGATGATGTGTT---GGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
...TCTAGT----------------------------ATTCGGATGATGTGTT---A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
...TCTAGT----------------------------ATTCGGATGATGTGTT---G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
.GGTCTAGT----------------------------ATTCGGATGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000001
........T----------------------------ATTCGGATGATGTGTT---GGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000100
droGri2
GAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTTG-GTGCTTTTCCCCTACACTCG------------GAAAAC--AATTGTGC-------TAAGAATTTCTACTTTTTAGAAATGTT-TTT----TT-TTTAATAGTAGGAATA--------------------------TTTGTACAAATTTTGAA---T---------------------------------------------------------------------------C---TCATA----------------------------------------------------------------------TCTAGAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:08 PM