ID:

dsi_20990

 Coordinate:

2l:23033240-23033389 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.6 -6.4

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dsi_16379  2l:20983790-20983815 +
  2. dsi_505  2l:21752883-21752908 +
  3. dsi_20990  2l:23033305-23033330 +
  4. dsi_24943  2r:1803758-1803783 +
star
  1. dsi_16379  2l:20983766-20983783 +
  2. dsi_505  2l:21752859-21752876 +
  3. dsi_20990  2l:23033281-23033298 +
  4. dsi_24943  2r:1803734-1803751 +

Sense Strand Reads

CCTGCATTATCGAAGAGTGCCCGCACTGGGAGGTCGAAGACTGGACCGGTGTAAGTAATTTGGAGCTCAGTCTACTTCCCACCAAGTTGTCTAACAACCAAACGCCTTGAGCGCTGCACAAGAAACTGTAGGAGCCAAACCTAGGAGCAGGGCCGGAGGATTATACTTTGAACTTTGACTATGTCAGAATTGGCGTACAGAGATCTCTCATTTTATGCACCGGAAATATGTATGTCTATGATTGCAAGGC
*******************************************************************************************...............(((.((.(((((........)))))..)))))...************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 M025
embryo
 M053
female body
 O001
Testis
 GSM343915
embryo
...................................................................................................................................................................................................TATCGTGATCTCTCATTTTATGCA............................... 24 3 4 1.00 4 0 4 0 0 0 0 0 0 0 0 0
.................................TCGAAGACTGGACCGGTGTAAGTAAT............................................................................................................................................................................................... 26 0 4 0.50 2 0 0 0 1 1 0 0 0 0 0 0
...................................................................................................................GCACAAGAAACTGTAGGAGCCAAACC............................................................................................................. 26 0 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0
......TTATCGAAGAGTGCCCGCACTGGGAGG......................................................................................................................................................................................................................... 27 0 4 0.50 2 0 1 0 1 0 0 0 0 0 0 0
.................TGCCCGCACTGGGAGGTCGAAGAC................................................................................................................................................................................................................. 24 0 4 0.50 2 0 2 0 0 0 0 0 0 0 0 0
.................................TCGAAGACTGGACCGGTGTAAGTAATT.............................................................................................................................................................................................. 27 0 4 0.50 2 0 0 0 0 0 2 0 0 0 0 0
............................................................................................................................................................AGGATTATACTTTGAG.............................................................................. 16 1 6 0.33 2 0 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................ACAAGAAACTTTAGGACC................................................................................................................... 18 2 7 0.29 2 0 0 0 0 0 0 0 2 0 0 0
......TTATCGAAGAGTGCCCGCACTGGGAGGT........................................................................................................................................................................................................................ 28 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
.................TGCCCGCACTGGGAGGTCGAAGA.................................................................................................................................................................................................................. 23 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................TGAGCGCTGCACAAGAAACTGTAGG...................................................................................................................... 25 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................TAACAACCAAACGCCTTG............................................................................................................................................. 18 0 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................................................................TTATGCACCGGAAATATGTATGTCTA............ 26 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................CCAAACCTAGGAGCAGGGCCGGA............................................................................................. 23 0 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................ACAAGAAACTGTAGGAGCCAAACCTAGG......................................................................................................... 28 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0
...................CCCGCACTGGGAGGTCGAAGACTGGAC............................................................................................................................................................................................................ 27 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
............................GGAGGTCGAAGACTGGACCGGTGTAA.................................................................................................................................................................................................... 26 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0
.....................CGCACTGGGAGGTCGAAGACTGGAC............................................................................................................................................................................................................ 25 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................GCTGCACAAGAAACTGTAGGAGCCAA................................................................................................................ 26 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................CAGAATTGGCGTACAGAGATCTCTCA........................................ 26 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
...................................................TAAGTAATTTGGAGCTCAGTCTACT.............................................................................................................................................................................. 25 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CGGAAATATGTATGTCTATGATTGC..... 25 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................TGCACAAGAAACTGTAGGAGCCAAACCTA........................................................................................................... 29 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................GGTGCACAAGAAACTGTAGGAGCCAA................................................................................................................ 26 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
.........................................TGGACCGGTGTAAGTAATTTGGAGC........................................................................................................................................................................................ 25 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0
..........................TGGGAGGTCGAAGACTGGACCGGTG....................................................................................................................................................................................................... 25 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
..........................TGGGAGGTCGAAGACTGGACCGGTGT...................................................................................................................................................................................................... 26 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................TTGAGCGCTGCACAAGAAACTGTA........................................................................................................................ 24 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.......TATCGAAGAGTGCCCGCACTGGGA........................................................................................................................................................................................................................... 24 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................CCAAGTAGTCTAACA.......................................................................................................................................................... 15 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................TAACGACCAAACGCC................................................................................................................................................ 15 1 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................GGATTATACTTTGAG.............................................................................. 15 1 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................ACCAAGTAGTCTAAC........................................................................................................................................................... 15 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0
................................GTCGAAGACTTGACC........................................................................................................................................................................................................... 15 1 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................CGAGGATTATACTGTGA............................................................................... 17 2 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................CGGAAGGATTAAACTTTGA............................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................................CTATGTCTGAATTGGCT....................................................... 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
................................................GTGTAACTAATTTGG........................................................................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GGACGTAATAGCTTCTCACGGGCGTGACCCTCCAGCTTCTGACCTGGCCACATTCATTAAACCTCGAGTCAGATGAAGGGTGGTTCAACAGATTGTTGGTTTGCGGAACTCGCGACGTGTTCTTTGACATCCTCGGTTTGGATCCTCGTCCCGGCCTCCTAATATGAAACTTGAAACTGATACAGTCTTAACCGCATGTCTCTAGAGAGTAAAATACGTGGCCTTTATACATACAGATACTAACGTTCCG
*************************************************************************************************************...............(((.((.(((((........)))))..)))))...******************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M053
female body
 M025
embryo
...........................................................................................................................................................................................................................GGCCTTTATACATACAGATACTAACGT.... 27 0 4 3.50 14 3 7 2 2 0 0 0
.............................................................................................................................................................................................................AGAGTAAAATACGTGGCCTTTATACAT.................. 27 0 4 2.75 11 3 3 2 3 0 0 0
.....................................................TCATTAAACCTCGAGTCAGATGAAGGGT......................................................................................................................................................................... 28 0 4 2.75 11 4 2 2 3 0 0 0
.....................................................................................................................................................................................................GTCTCTAGAGAGTAAAATACGTGGCCT.......................... 27 0 4 2.25 9 7 2 0 0 0 0 0
.....................................................................CAGATGAAGGGTGGTTCAACAGAT............................................................................................................................................................. 24 0 4 2.25 9 7 0 2 0 0 0 0
...................................................................................................................................................................................................ATGTCTCTAGAGAGTAAAATACGTGGCCT.......................... 29 0 4 2.00 8 6 2 0 0 0 0 0
...........................................................................................................................................................................................................AGAGAGTAAAATACGTGGCCTTTATACAT.................. 29 0 4 2.00 8 7 1 0 0 0 0 0
...................................................................................................................................................................ATGAAACTTGAAACTGATACAGTCTT............................................................. 26 0 4 1.75 7 1 4 0 2 0 0 0
.....................................................................CAGATGAAGGGTGGTTCAACAGATTGT.......................................................................................................................................................... 27 0 4 1.75 7 4 2 1 0 0 0 0
....................................................................................TCAACAGATTGTTGGTTTGCGGAACT............................................................................................................................................ 26 0 4 1.50 6 4 1 0 1 0 0 0
.............................................................CCTCGAGTCAGATGAAGGGTGGTT..................................................................................................................................................................... 24 0 4 1.25 5 3 1 0 0 1 0 0
.....................................................................................................................................................................................................GTCTCTAGAGAGTAAAATACGTGGCCTT......................... 28 0 4 1.25 5 4 0 1 0 0 0 0
..........................................................................................................................................................................................CTTAACCGCATGTCTCTAGAGAGT........................................ 24 0 4 1.00 4 1 1 1 1 0 0 0
............................................................................AGGGTGGTTCAACAGATTGTTGGTT..................................................................................................................................................... 25 0 4 1.00 4 2 2 0 0 0 0 0
.........................................................TAAACCTCGAGTCAGATGAAGGGTGGTT..................................................................................................................................................................... 28 0 4 1.00 4 0 1 1 1 0 0 1
.................................................................................................................................................................................TGATACAGTCTTAACCGCATGTCT................................................. 24 0 4 0.75 3 0 3 0 0 0 0 0
..............................................................................................................................................................................AACTGATACAGTCTTAACCGCATGT................................................... 25 0 4 0.75 3 1 2 0 0 0 0 0
....................................................................................TCAACAGATTGTTGGTTTGCGGAAC............................................................................................................................................. 25 0 4 0.75 3 1 2 0 0 0 0 0
.........................................................TAAACCTCGAGTCAGATGAAGGGTGGT...................................................................................................................................................................... 27 0 4 0.75 3 1 1 1 0 0 0 0
...........................................CTGGCCACATTCATTAAACCTCGAGT..................................................................................................................................................................................... 26 0 4 0.75 3 1 0 1 1 0 0 0
...........................................................................................................................................................................................................AGAGAGTAAAATACGTGGCCTTTAT...................... 25 0 4 0.75 3 2 1 0 0 0 0 0
....................................................................................................................................................................................................TGTCTCTAGAGAGTAAAATACGTGGCCT.......................... 28 0 4 0.75 3 2 1 0 0 0 0 0
.............................................................CCTCGAGTCAGATGAAGGGTGGT...................................................................................................................................................................... 23 0 4 0.50 2 0 1 0 1 0 0 0
...........................................................................................................................................................................TGAAACTGATACAGTCTTAACCGCATGT................................................... 28 0 4 0.50 2 1 0 0 1 0 0 0
...................................................................................................................................................................ATGAAACTTGAAACTGATACAGTCT.............................................................. 25 0 4 0.50 2 1 1 0 0 0 0 0
....................................................................................................TTGCGGAACTCGCGACGTGTTCT............................................................................................................................... 23 0 4 0.50 2 1 0 0 0 1 0 0
..........................................................AAACCTCGAGTCAGATGAAGGGTGGT...................................................................................................................................................................... 26 0 4 0.50 2 1 0 0 0 1 0 0
.....TAATAGCTTCTCACGGGCGT................................................................................................................................................................................................................................. 20 0 4 0.50 2 0 0 2 0 0 0 0
.................................................................GAGTCAGATGAAGGGTGGTTCAACAGAT............................................................................................................................................................. 28 0 4 0.50 2 2 0 0 0 0 0 0
............................................................................................................................................................................GAAACTGATACAGTCTTAACCGCATGT................................................... 27 0 4 0.50 2 2 0 0 0 0 0 0
...................................................................................................................................................................................................ATGTCTCTAGAGAGTAAAATACGTGGCC........................... 28 0 4 0.50 2 0 0 2 0 0 0 0
...........................................................................................................................................................................................................AGAGAGTAAAATACGTGGCCTTTATAC.................... 27 0 4 0.50 2 0 2 0 0 0 0 0
.....................................................................................................................................................................................................GTCTCTAGATAGTAAAATACGTGGC............................ 25 1 4 0.50 2 0 2 0 0 0 0 0
.................................................................................................................................................................................................GCATGTCTCTAGAGAGTAAAATACGT............................... 26 0 4 0.50 2 0 1 1 0 0 0 0
................................................................CGAGTCAGATGAAGGGTGGTTCAACAGAT............................................................................................................................................................. 29 0 4 0.50 2 0 1 1 0 0 0 0
.....................................................................................................................................................................................................GTCTCTAGAGAGTAAAATACGTGGCC........................... 26 0 4 0.50 2 0 1 1 0 0 0 0
....................................................................................................TTGCGGAACTCGCGACGTGTTCTT.............................................................................................................................. 24 0 4 0.50 2 0 2 0 0 0 0 0
...........................................................................................................................................................................................................................GGCCTTTATACATACAGATACTAACGTT... 28 0 4 0.50 2 1 1 0 0 0 0 0
............................................TGGCCACATTCATTAAACCTCGAGT..................................................................................................................................................................................... 25 0 4 0.50 2 0 2 0 0 0 0 0
.............................................GGCCACATTCATTAAACCTCGAGTCAGAT................................................................................................................................................................................ 29 0 4 0.50 2 0 2 0 0 0 0 0
.................................................................................................GGTTTGCGGAACTCGCGACGTGTT................................................................................................................................. 24 0 4 0.50 2 0 0 0 0 2 0 0
.............TCTCACGGGCGTGACCCTCCAGCTT.................................................................................................................................................................................................................... 25 0 4 0.50 2 1 0 0 0 0 1 0
.....................................................TCATTAAACTTCGAGTCAGATGAAGGGT......................................................................................................................................................................... 28 1 4 0.50 2 0 2 0 0 0 0 0
..............................................................CTCGAGTCAGATGAAGGGTGGTTCAA.................................................................................................................................................................. 26 0 4 0.50 2 0 2 0 0 0 0 0
................................................................................................................................................................................................CGCATGTCTCTAGAGAGTAAAATACGT............................... 27 0 4 0.25 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................GTCTCTAGAGAGTAAAATACGTGGCCTTT........................ 29 0 4 0.25 1 0 1 0 0 0 0 0
...................................................................................................................................................................................................ATGTCTCTAGAGAGTAAAATACGTGGCCTT......................... 30 0 4 0.25 1 0 1 0 0 0 0 0
.............................CTCCAGCTTCTGACCTGGCCACAT..................................................................................................................................................................................................... 24 0 4 0.25 1 0 0 0 0 0 1 0
......................................................................................................................................................................................................TCTCTAGAGAGTAAAATACGTGGCCT.......................... 26 0 4 0.25 1 1 0 0 0 0 0 0
GGACGTAATAGCTTCTCACGGGCGT................................................................................................................................................................................................................................. 25 0 4 0.25 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................TCTTAACCGCATGTCTCTAGAGAGT........................................ 25 0 4 0.25 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGGCCTTTATACATACAGATACTAACGT.... 28 0 4 0.25 1 1 0 0 0 0 0 0
........................................................................................CAGATTGTTGGTTTGCGGA............................................................................................................................................... 19 0 4 0.25 1 0 1 0 0 0 0 0
..........................................................................................................AACTCGCGACGTGTTCTTTGACAT........................................................................................................................ 24 0 4 0.25 1 0 1 0 0 0 0 0
...................................................................................................................................................................ATGAAACTTGAAACTTATACAGTCT.............................................................. 25 1 4 0.25 1 0 0 1 0 0 0 0
.........................................................TAAACCTCGAGTCAGATGAAGGGT......................................................................................................................................................................... 24 0 4 0.25 1 0 0 0 0 1 0 0
................CACGGGCGTGACCCTCCAGCTTCTGAC............................................................................................................................................................................................................... 27 0 4 0.25 1 0 1 0 0 0 0 0
...........................................................................................................ACTCGCGACGTGTTCTTTGACATCC...................................................................................................................... 25 0 4 0.25 1 0 0 0 0 1 0 0
.........................................................................TGAAGGGTGGTTCAACAG............................................................................................................................................................... 18 0 4 0.25 1 0 0 0 0 1 0 0
..............................................................................................................................................................................AACTGATACAGTCTTAACCGCATGTCT................................................. 27 0 4 0.25 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................GTCTCTAGAGAGTAAAATACTTGGCCT.......................... 27 1 4 0.25 1 0 1 0 0 0 0 0
................................................................................................................................................................................CTGATACAGTCTTAACCGCATGTCT................................................. 25 0 4 0.25 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................ATACGTGGCCTTTATACATACAGATACT......... 28 0 4 0.25 1 1 0 0 0 0 0 0
........................................................ATAAACCTCGAGTCAGATGAAGGGTGGT...................................................................................................................................................................... 28 1 4 0.25 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................TCTAGAGAGTAAAATACGTGGCCTTTAT...................... 28 0 4 0.25 1 0 1 0 0 0 0 0
......................................................................................................................................................................................................TCTCTAGAGAGTAAAATACGTGGCCTTT........................ 28 0 4 0.25 1 0 1 0 0 0 0 0
......................................................................AGATGAAGGGTGGTTCAACAGATTGT.......................................................................................................................................................... 26 0 4 0.25 1 0 1 0 0 0 0 0
................................................................................................TGGTTTGCGGAACTCGCGACGTGTTCTT.............................................................................................................................. 28 0 4 0.25 1 0 1 0 0 0 0 0
........................................................................ATGAAGGGTGGTTCAACAGATTGTT......................................................................................................................................................... 25 0 4 0.25 1 0 0 0 1 0 0 0
...............TCACGGGCGTGACCCTCCAGCTTCTGA................................................................................................................................................................................................................ 27 0 4 0.25 1 0 0 0 0 1 0 0
....................................................................................................................................................................................................AGTCTCTAGAGAGTAAAATACGTGGCCTTT........................ 30 1 4 0.25 1 1 0 0 0 0 0 0
...........................................................................................................................................................................TGAAACTGATACAGTCTTAACCGCAT..................................................... 26 0 4 0.25 1 0 0 0 1 0 0 0
.............................................GGCCACATTCATTAAACCTCGAGT..................................................................................................................................................................................... 24 0 4 0.25 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGCCTTTATACATACAGATACTCGT...... 25 3 4 0.25 1 0 0 1 0 0 0 0
...................................................................................................................................................................................................ATGTCTCTAGAGAGTAAAATACGTGGCCTTT........................ 31 0 4 0.25 1 1 0 0 0 0 0 0
..............................................................CTCGAGTCAGATGAAGGGTGGTT..................................................................................................................................................................... 23 0 4 0.25 1 0 1 0 0 0 0 0
........................................................TTAAACCTCGAGTCAGATGAAGGGT......................................................................................................................................................................... 25 0 4 0.25 1 0 1 0 0 0 0 0
...........................................................................................................................................................................TGAAACTGATACAGTCTTAACCGCATGTCTCT............................................... 32 0 4 0.25 1 1 0 0 0 0 0 0
.............................................................CCTCGAGTCAGATGAAGGGT......................................................................................................................................................................... 20 0 4 0.25 1 0 0 0 0 1 0 0
.........................................................................TGAAGGGTGGTTCAACAGATTTTTGGTT..................................................................................................................................................... 28 1 4 0.25 1 0 0 0 0 1 0 0
...................................................................................................................................................................ATGAAACTTGAAACTGATACGGTCTT............................................................. 26 1 4 0.25 1 0 1 0 0 0 0 0
.........................................................TTAACCTCGAGTCAGATGAAGGGTGGT...................................................................................................................................................................... 27 1 4 0.25 1 0 1 0 0 0 0 0
............................................................................AGGGTGGTTCAACAGATTGTTGGTTT.................................................................................................................................................... 26 0 4 0.25 1 1 0 0 0 0 0 0
....................................................................................................................................................................................TACAGTCTTAACCGCATGTCTCTAGA............................................ 26 0 4 0.25 1 0 1 0 0 0 0 0
...............................................................................................................................................................................ACTGATACAGTCTTAACCGCATGTCT................................................. 26 0 4 0.25 1 1 0 0 0 0 0 0
........................................................TTAAACCTCGAGTCAGATGAAGGGTGGT...................................................................................................................................................................... 28 0 4 0.25 1 0 1 0 0 0 0 0
.................................................................................GGTTCAACAGATTGTTGGTTTGCGG................................................................................................................................................ 25 0 4 0.25 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................ACAGTCTTAACCGCATGTCTCTAGA............................................ 25 0 4 0.25 1 1 0 0 0 0 0 0
.....................................................................CAGATGAAGCGTGGTTCAACAGAT............................................................................................................................................................. 24 1 4 0.25 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................ATGTCTCTAGAGAGTAAAATACGT............................... 24 0 4 0.25 1 0 1 0 0 0 0 0
.....................................TCAGACCTGGCCACAT..................................................................................................................................................................................................... 16 1 4 0.25 1 0 1 0 0 0 0 0
..................................................................................................................................................................................................................AAAATACGTGGCCTTTATACATACAGA............. 27 0 4 0.25 1 0 0 0 1 0 0 0
...........................................................AACCTCGAGTCAGATGAAGGGTGGT...................................................................................................................................................................... 25 0 4 0.25 1 0 0 0 0 1 0 0
.................................................................GAGTCAGATGAAGGGTGGTTCAACAGA.............................................................................................................................................................. 27 0 4 0.25 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................................CTCTAGAGAGTAAAATACGTGGCCT.......................... 25 0 4 0.25 1 0 0 0 0 1 0 0
...................................................................................................................................................................................................ATGTCTCTAGAGAGTAAAATACGTGG............................. 26 0 4 0.25 1 1 0 0 0 0 0 0
......................................CTGACCTGGCCACATTCATTAAACCT.......................................................................................................................................................................................... 26 0 4 0.25 1 1 0 0 0 0 0 0
........................................................TTAAACCTCGAGTCAGATGAAGGGTGGTT..................................................................................................................................................................... 29 0 4 0.25 1 0 1 0 0 0 0 0
.........................................................................................................................................TTGGATCCTCGTCCCGGCCTCCT.......................................................................................... 23 0 4 0.25 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................AGAGGGTAAAATACGTGGCCTTTATACAT.................. 29 1 4 0.25 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................ATGTCTCTAGAGAGTAAAATACGTGGC............................ 27 0 4 0.25 1 0 0 1 0 0 0 0
....................................................TTCATTAAACCTCGAGTCAGATGAAGGGT......................................................................................................................................................................... 29 0 4 0.25 1 0 1 0 0 0 0 0
............................................................................................................................................................................GAAACTGATACAGTCTTAACCGCATGTCT................................................. 29 0 4 0.25 1 1 0 0 0 0 0 0
........................................................TTAAACCTCGAGTCAGATGAAGGGTGG....................................................................................................................................................................... 27 0 4 0.25 1 0 1 0 0 0 0 0
...............................................................TCGAGTCAGATGAAGGGTGGTTCAAC................................................................................................................................................................. 26 0 4 0.25 1 1 0 0 0 0 0 0
........................TGAGCCTGCAGCTTCTG................................................................................................................................................................................................................. 17 2 14 0.21 3 0 2 0 1 0 0 0
...........................................................ATCCTCGAGCCAGATGAA............................................................................................................................................................................. 18 2 5 0.20 1 0 1 0 0 0 0 0
.................................................................................................................................................................AAATGAAACTTGAAACTGAT..................................................................... 20 1 5 0.20 1 0 1 0 0 0 0 0
............................................................................................................................TGGCGTCCTCGGTTTGGA............................................................................................................ 18 2 6 0.17 1 0 0 1 0 0 0 0
.....................................TCAGACCTGGCCACA...................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 1 0 0 0
....................................................................................................TTGCGGAACTCGAGA....................................................................................................................................... 15 1 8 0.13 1 0 1 0 0 0 0 0
................................CAGCTTCCGAACTAGCCAC....................................................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 0 0 2
.....................................TCAGAGCTGGCCACATAC................................................................................................................................................................................................... 18 3 20 0.05 1 0 1 0 0 0 0 0
.................................................................................................................................TCCTAGGTTTGGATGCGC....................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1
.........AGCTCCTTACAGGCGTGAC.............................................................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:23033190-23033439 + dsi_20990 CCTGCATTATCGAAGAGTGCCCGCACTGGGAGGTCGAAGACTGGACCGGTGTAAGTAATTTGG-AGCT--------C-AG--------T----------------C------------TACTTCCCACCAAGTTGTCTAACAACCAAACG---CCTTG-AGCGCTGCAC-AA-------------GAAACT---GTAGGAGCCAA------ACCTAGGAGCAGGG-CCGGAGGATTATACTTTGAACTTTGACTA--------------------------------------------------------------TGTCAGAATTGGCGTACAGAGATCTCTCAT-TTTATGCACCGG-AAATATGTATG--TCTATGAT-----TGCAAGGC
droSec2 scaffold_28:256572-256752 + CCTGCATTATCGAAGAGTGCCCGCACTGGGAGGTCGAAGACTGGACCGGTGTAAGTAATTTGGGAGCT--------C-AG--------T----------------C------------TACTTCCCACCAAGTTGTCTAACAACCAAACG---CCCTCGAGCGCTGCAC--A-------------GAAACT---GCAGGAGCCAA------ACCTAGGCGCAGGG-CCGGAGGATTATACTTTGAACTTTGACT---------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr2L:21711361-21711606 + CCTGCATTATCGAGGAGTGTCCGCACTGGGAGGTCGAAGACTGGACCGGTGTAAGTACTTTGG-ATCT--------C-AG--------C----------------C------------TATTTCCCACCAAGTTGTCTAACAACCACACG---CCTTG-AGCGCTGCAC-AA-------------GAAACT---GTAGGAGCCAA------ACCTAGGCGCAGGA-CCGCAGTACTATACCTTGCACCTTGACTA--------------------------------------------------------------TGTCAGAATAAGCGTACAGAGGTCTCTCAT-TTTATGCACCGG-ATATGT----G--TCTATGAT-----TGGAAGAT
droEre2 scaffold_4845:2817086-2817380 - CCTGCATTATCGAGGAGTGCCCGCACTGGGAGGTCGAGGACTGGACCGGAGTAAGTACCTCA---------------------------------------------------------ACCACCAACCAAGTTATGTAACAACCTTGTAATGCCTTG-AGCGCTGCAG-AA-------------GAAACT---GTAGGAGCAAA------ACCCAGGTGCAGGA-CCGGAACATTACACTTTGCACTTTGACGATATCTAAGGCTTTTAAGTATCGAATTGTTGGTCGTCAGTCCTGAAATCGAAATAACAGTACATGGCAGAATTGGCATACAAAGATCTATTAT-TGTACATATCGC-AAATGT----T--TCTAGGAT-----TTC-----
droYak3 2R:1134865-1135046 - CCTGCATTATCGAGGAGTGCCCGCACTGGGAGGTCGAGGACTGGACCGGTGTAAGTACTTTAG-ACCT--------------------------------------------------------CAATCAAGTTGTGTAACAACAACACG---CCTTG-AGCGCTGAAG-AA-------------GACACTTTAGTAGGATCCAA------ACCAAGGCGGAAGG-CTGGAAGATTACATTTTGCACTTTGATGATA--------------------------------------------------------------TCGAAGT---------------------------------------------------------------------
droEug1 scf7180000409752:145488-145606 + CCTGCATTATCGAGGAGTGTCCGCATTGGGAGGTGGAGGACTGGACCGGTGTAAGTACTTTAGCACCT--------C-AG--------C----------------C------------CACTTTCCAGCAAGTCGTGTAATAATCGTGCA---CTCTC-TGTGCTGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302422:3442881-3443079 - CCTGCATTATCGAGGAGTGTCCGCATTGGGAGGTCGAGGACTGGACCGGCGTAAGTACCTTAGCACCT--------C-AGCAGCTCAGCAACATGGCTCCCCATCC------------CACTTCCCAGCCAGTCGTGTAATAATCGTGCA---CTTTC-TGTGCTGCAGCCAGAAA-----------AAGT---GGAGGACCCAG------ACGTAGACGTG-------GCAAGTTGCACGTTGAGCGTTG------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415390:195817-196088 - CCTGCATTATCGAGGAGTGTCCGCATTGGGAGGTCGAGGACTGGACCGGCGTAAGTACCTTAC-GGCTCAGCAACTC-ATCACCTCAGC---------------CC-------ACTTACACTTCCCAGCAAGTCGTGTAATAATCGTGCA---CTTTC-TGTGCTGCAGCCAGAAA----------AAAGT---GGAGGACCCAG------ACGTAGACGTTGCAAGTAGCAAGTTCCCCGTTGCACGTTGACGAGG--------------------------------------------------------------CCACGTCTGGTCT-----GGGCCCTTTG-TGTATACTTAGCTAAATGT--------CTGGGTTGCCGCTGCTCGCT
droEle1 scf7180000490970:974958-975138 - CCTGCATTATAGAGGAGTGTCCGCATTGGGAGGTCGAGGATTGGACCGGCGTAAGTACCTTAGCACCT--------C-AG--------C----------------C------------CACATCCCAGCCCGTCGTGCACTAATCGTGCA---CTTTC-TGTGCTGCAGCCAGAAA-----------AAGT---GGAGTACCCAG------ACGTAGACGTG-------GCAAGTTACACGTTG-------ACGAGG-------CT--------------------------------------------------ATGTC--------------------------------------------------------------------------
droRho1 scf7180000780137:54361-54512 - CCTGCATTATCGAGGAGTGTCCGCATTGGGAGGTCGAGGACTGGACCGGTGTAAGTACCTTGCCACCC--------C--C----------------------AA---------CCCCCCACATCCCCGCCAGTCGTGTAATAATCGTGCA---CTTTC-TGCGCTGCGGCCAGAAA-----------AAGT---GGAGTACCCAG------ACGTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453973:544725-544840 - CCTGCATTATCGAGGAGTGTCCGCATTGGGAGGTCGAGGACTGGACCGGCGTAAGTACTTG-CCACCG--------C-GG--------C---------------CC------------CACTTCCCAGCTGCTCGTGTAATAATCGTGCA---CCTTC-CGCACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302660:23255-23374 - CCTGCATTATCGAGGAGTGTCCGCATTGGGAGGTCGAGGACTGGACTGGGGTAAGTACCTGGGTACCT--------CTGG--------G----------------C------------TGAGGTACAACAAGTCGTGCAATAATCGTGCA---CTTTC-TGTGCTGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12916:9310312-9310444 + CCTGCATTATCGAGGAGTGTCCGCATTGGGAGGTCGAGGACTGGACCGGTGTAAGTACTTTACTTAC---------------------------------------AGACCCACCCACCGTTTCCCAACAAGTCGTGTAATAATCATGCA---CTTTC-TGTGCTGCAGCCAGAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396535:1878040-1878171 + CCTGCATTATCGAGGAGTGTCCGCATTGGGAGGTCGAGGACTGGACCGGTGTAAGTACTTTACCACA------------G--------C--------------------TCCACCCACCGTTTCCCAACAAGTCGTGTAATAATCATGCA---CTTTC-TGTGCTGCAGCCAGAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 4_group1:3938143-3938265 - CCTGCATTATCGAGGAGTGTCCGCACTGGGAGGTGGAGGACTGGACCGGTGTAAGTACCAAGC-AAAC--------C-AT----------------------TT---------CCCATTTCTACCCAACAAGTCGTGTAATAATCATGCA---CTTTC-TGTGCTGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_5:1332096-1332262 + CCTGCATTATCGAGGAGTGTCCGCACTGGGAGGTGGAGGACTGGACCGGTGTAAGTACCAACC-AAAC--------C-AT----------------------TT---------CCCATTTCTACCCAACAAGTCGTGTAATAATCATGCA---CTTTC-TGTGCTGCAACACGGAACAGGGAACAGGGAA-----TGGGAGAGGGACTCAGACGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004585:8599624-8599718 - CCTGCATTATCGAGGAGTGTCCGCATTGGGAGGTGGAGGACTGGACTGGTGTAAGTAGCA-----------------------------------------------------------ACCAACCAACAAGTCGTGTAATAATCATGCA---CTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13052:900762-900866 + GAGCAAGGAGTAAGGAATATAA-----------------------------------------TGCC---------------------------------------GATCTTGATTCACATGTCTTGACAAAAAATGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTATGCTTATGCAGCAG-AAAGACGCGCCTTAGTAAAGT-----TTCAAGAC
droMoj3 scaffold_6500:11589898-11589954 + CCTGCATTATCGAGGAGTGCCCACACTGGGAGGTTGAGGATTGGACTGGCGTAAGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15252:1595536-1595592 - CCTGCATTATTGAGGAGTGTCCGCACTGGGAGGTGGAGGACTGGACCGGTGTAAGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCTGCATTATCGAAGAGTGCCCGCACTGGGAGGTCGAAGACTGGACCGGTGTAAGTAATTTGG-AGCT--------C-AG--------T----------------C------------TACTTCCCACCAAGTTGTCTAACAACCAAACG---CCTTG-AGCGCTGCAC-AA-------------GAAACT---GTAGGAGCCAA------ACCTAGGAGCAGGG-CCGGAGGATTATACTTTGAACTTTGACTA--------------------------------------------------------------TGTCAGAATTGGCGTACAGAGATCTCTCAT-TTTATGCACCGG-AAATATGTATG--TCTATGAT-----TGCAAGGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................TCGAAGACTGGACCGGTGTAAGTAAT................................................................................................................................................................................................................................................................................................................................................2640.50200000001000010000
.....................................................................................................................................................................GCAC-AA-------------GAAACT---GTAGGAGCCAA------ACC.....................................................................................................................................................................................2640.50200000020000000000
......TTATCGAAGAGTGCCCGCACTGGGAGG..........................................................................................................................................................................................................................................................................................................................................................................2740.50200000001100000000
.................TGCCCGCACTGGGAGGTCGAAGAC..................................................................................................................................................................................................................................................................................................................................................................2440.50200000000200000000
.................................TCGAAGACTGGACCGGTGTAAGTAATT...............................................................................................................................................................................................................................................................................................................................................2740.50200000000000002000
......................................................................................................................................................................................................................................AGGATTATACTTTGAG.....................................................................................................................................................1660.33200000000110000000
......TTATCGAAGAGTGCCCGCACTGGGAGGT.........................................................................................................................................................................................................................................................................................................................................................................2840.25100000000010000000
.................TGCCCGCACTGGGAGGTCGAAGA...................................................................................................................................................................................................................................................................................................................................................................2340.25100000000010000000
............................................................................................................................................................TG-AGCGCTGCAC-AA-------------GAAACT---GTAGG....................................................................................................................................................................................................2540.25100000010000000000
.........................................................................................................................................TAACAACCAAACG---CCTTG-............................................................................................................................................................................................................................................1840.25100001000000000000
.............................................................................................................................................................................................................................................................................................................................................................TTATGCACCGG-AAATATGTATG--TCTA.................2640.25100000000010000000
.........................................................................................................................................................................................................CCAA------ACCTAGGAGCAGGG-CCGGA....................................................................................................................................................................2340.25100010000000000000
.......................................................................................................................................................................AC-AA-------------GAAACT---GTAGGAGCCAA------ACCTAGG.................................................................................................................................................................................2840.25100000001000000000
...................CCCGCACTGGGAGGTCGAAGACTGGAC.............................................................................................................................................................................................................................................................................................................................................................2740.25100000000100000000
............................GGAGGTCGAAGACTGGACCGGTGTAA.....................................................................................................................................................................................................................................................................................................................................................2640.25100000001000000000
.....................CGCACTGGGAGGTCGAAGACTGGAC.............................................................................................................................................................................................................................................................................................................................................................2540.25100000000000010000
..................................................................................................................................................................GCTGCAC-AA-------------GAAACT---GTAGGAGCCAA------........................................................................................................................................................................................2640.25100000000000010000
................................................................................................................................................................................................................................................................................................................................CAGAATTGGCGTACAGAGATCTCTCA.................................................2640.25100000000000010000
...................................................TAAGTAATTTGG-AGCT--------C-AG--------T----------------C------------TACT.................................................................................................................................................................................................................................................................................2540.25100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................CGG-AAATATGTATG--TCTATGAT-----TGC.....2540.25100000000010000000
....................................................................................................................................................................TGCAC-AA-------------GAAACT---GTAGGAGCCAA------ACCTA...................................................................................................................................................................................2940.25100000010000000000
.........................................TGGACCGGTGTAAGTAATTTGG-AGC........................................................................................................................................................................................................................................................................................................................................2540.25100000001000000000
..........................TGGGAGGTCGAAGACTGGACCGGTG........................................................................................................................................................................................................................................................................................................................................................2540.25100000010000000000
..........................TGGGAGGTCGAAGACTGGACCGGTGT.......................................................................................................................................................................................................................................................................................................................................................2640.25100000000010000000
...........................................................................................................................................................TTG-AGCGCTGCAC-AA-------------GAAACT---GTA......................................................................................................................................................................................................2440.25100000010000000000
.......TATCGAAGAGTGCCCGCACTGGGA............................................................................................................................................................................................................................................................................................................................................................................2440.25100000010000000000
.......................................................................................................................................................................................................................................GGATTATACTTTGAG.....................................................................................................................................................1590.11100000000100000000
droSec2
CCTGCATTATCGAAGAGTGCCCGCACTGGGAGGTCGAAGACTGGACCGGTGTAAGTAATTTGGGAGCT--------C-AG--------T----------------C------------TACTTCCCACCAAGTTGTCTAACAACCAAACG---CCCTCGAGCGCTGCAC--A-------------GAAACT---GCAGGAGCCAA------ACCTAGGCGCAGGG-CCGGAGGATTATACTTTGAACTTTGACT---------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
CCTGCATTATCGAGGAGTGTCCGCACTGGGAGGTCGAAGACTGGACCGGTGTAAGTACTTTGG-ATCT--------C-AG--------C----------------C------------TATTTCCCACCAAGTTGTCTAACAACCACACG---CCTTG-AGCGCTGCAC-AA-------------GAAACT---GTAGGAGCCAA------ACCTAGGCGCAGGA-CCGCAGTACTATACCTTGCACCTTGACTA--------------------------------------------------------------TGTCAGAATAAGCGTACAGAGGTCTCTCAT-TTTATGCACCGG-ATATGT----G--TCTATGAT-----TGGAAGATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................CGCTGCAC-AA-------------GAAACT---GTAGGAGCCT...............................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................ATGT----G--TCTATGAT-----TGGAAGAT2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................................................ATATGT----G--TCTATGAT-----TGGAAG..2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................AT-TTTATGCACCGG-ATA...............................1712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GCATTATCGAGGAGTGTCC.....................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................AA------ACCTAGGCGCAGGA-CCGCA....................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.........TCGAGGAGTGTCCGCACTGGGAGGTCGA......................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................ACTGGGAGGTCGAAGACTGGACC............................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................CGCACTGGGAGGTCGAAGACTGGAC.............................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCGAGGAGTGTCCGCACTGGG.............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TTG-AGCGCTGCAC-AA-------------GAAACT---GTAGGAG..................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GCACTGGGAGGTCGAAGACT.................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................................CCGCAGTACTATACCTTGCACCTTGAC..............................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................AGTTGTCTAACAACCACACG---..................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GTCGAAGACTGGACCGGT.........................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................T---GTAGGAGCCAA------ACCTAGGCGCAGG...........................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.................................................TGTAAGTACTTTGG-ATCT--------C-AG--------...................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.......................................................................................................................................TCTAACAACCACACG---CCTTG-AGCGCT......................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...........................GGGAGGTCGAAGACTGGAC.............................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
...................TCCGCACTGGGAGGTCGAAGACTGGAC.............................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
....................................................................................................................................................................TGCAC-AA-------------GAAACT---GTAGGAGC.................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................TGCAC-AA-------------GAAACT---GTAGGAGCCAA------ACC.....................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCGAGGAGTGTCCGCACTGGGAGGTC........................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................TATACCTTGCACCTTGACTA--------------------------------------------------------------TGTCAGAA......................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GCACTGGGAGGTCGAAGAC..................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................GGGAGGTCGAAGACTGGA..............................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................GTCCGCACTGGGAGGTCGA......................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................CCTAGGCGCAGGA-CCGCAG...................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....ATTATCGAGGAGTGTCCGCACTGG..............................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ACTGGGAGGTCGAAGACTGGACCGGT.........................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GGGAGGTCGAAGACTGGACCGGT.........................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GGTCGAAGACTGGACCGGTGT.......................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
......................GCACTGGGAGGTCGAAGACTGGACC............................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................C-AA-------------GAAACT---GTAGGAGCCAA------ACCTAGGC................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................AAGTACTTTGG-ATCT--------C-AG--------C----------------C------------T....................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
droEre2
CCTGCATTATCGAGGAGTGCCCGCACTGGGAGGTCGAGGACTGGACCGGAGTAAGTACCTCA---------------------------------------------------------ACCACCAACCAAGTTATGTAACAACCTTGTAATGCCTTG-AGCGCTGCAG-AA-------------GAAACT---GTAGGAGCAAA------ACCCAGGTGCAGGA-CCGGAACATTACACTTTGCACTTTGACGATATCTAAGGCTTTTAAGTATCGAATTGTTGGTCGTCAGTCCTGAAATCGAAATAACAGTACATGGCAGAATTGGCATACAAAGATCTATTAT-TGTACATATCGC-AAATGT----T--TCTAGGAT-----TTC-----SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
CCTGCATTATCGAGGAGTGCCCGCACTGGGAGGTCGAGGACTGGACCGGTGTAAGTACTTTAG-ACCT--------------------------------------------------------CAATCAAGTTGTGTAACAACAACACG---CCTTG-AGCGCTGAAG-AA-------------GACACTTTAGTAGGATCCAA------ACCAAGGCGGAAGG-CTGGAAGATTACATTTTGCACTTTGATGATA--------------------------------------------------------------TCGAAGT---------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................CGCACTGGGAGGTCGAGGACT.................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000
droEug1
CCTGCATTATCGAGGAGTGTCCGCATTGGGAGGTGGAGGACTGGACCGGTGTAAGTACTTTAGCACCT--------C-AG--------C----------------C------------CACTTTCCAGCAAGTCGTGTAATAATCGTGCA---CTCTC-TGTGCTGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CCTGCATTATCGAGGAGTGTCCGCATTGGGAGGTCGAGGACTGGACCGGCGTAAGTACCTTAGCACCT--------C-AGCAGCTCAGCAACATGGCTCCCCATCC------------CACTTCCCAGCCAGTCGTGTAATAATCGTGCA---CTTTC-TGTGCTGCAGCCAGAAA-----------AAGT---GGAGGACCCAG------ACGTAGACGTG-------GCAAGTTGCACGTTGAGCGTTG------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CCTGCATTATCGAGGAGTGTCCGCATTGGGAGGTCGAGGACTGGACCGGCGTAAGTACCTTAC-GGCTCAGCAACTC-ATCACCTCAGC---------------CC-------ACTTACACTTCCCAGCAAGTCGTGTAATAATCGTGCA---CTTTC-TGTGCTGCAGCCAGAAA----------AAAGT---GGAGGACCCAG------ACGTAGACGTTGCAAGTAGCAAGTTCCCCGTTGCACGTTGACGAGG--------------------------------------------------------------CCACGTCTGGTCT-----GGGCCCTTTG-TGTATACTTAGCTAAATGT--------CTGGGTTGCCGCTGCTCGCTSizeHit CountTotal NormTotal
No Reads
droEle1
CCTGCATTATAGAGGAGTGTCCGCATTGGGAGGTCGAGGATTGGACCGGCGTAAGTACCTTAGCACCT--------C-AG--------C----------------C------------CACATCCCAGCCCGTCGTGCACTAATCGTGCA---CTTTC-TGTGCTGCAGCCAGAAA-----------AAGT---GGAGTACCCAG------ACGTAGACGTG-------GCAAGTTACACGTTG-------ACGAGG-------CT--------------------------------------------------ATGTC--------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CCTGCATTATCGAGGAGTGTCCGCATTGGGAGGTCGAGGACTGGACCGGTGTAAGTACCTTGCCACCC--------C--C----------------------AA---------CCCCCCACATCCCCGCCAGTCGTGTAATAATCGTGCA---CTTTC-TGCGCTGCGGCCAGAAA-----------AAGT---GGAGTACCCAG------ACGTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CCTGCATTATCGAGGAGTGTCCGCATTGGGAGGTCGAGGACTGGACCGGCGTAAGTACTTG-CCACCG--------C-GG--------C---------------CC------------CACTTCCCAGCTGCTCGTGTAATAATCGTGCA---CCTTC-CGCACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CCTGCATTATCGAGGAGTGTCCGCATTGGGAGGTCGAGGACTGGACTGGGGTAAGTACCTGGGTACCT--------CTGG--------G----------------C------------TGAGGTACAACAAGTCGTGCAATAATCGTGCA---CTTTC-TGTGCTGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
CCTGCATTATCGAGGAGTGTCCGCATTGGGAGGTCGAGGACTGGACCGGTGTAAGTACTTTACTTAC---------------------------------------AGACCCACCCACCGTTTCCCAACAAGTCGTGTAATAATCATGCA---CTTTC-TGTGCTGCAGCCAGAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........ATCGAGGAGTGTCCGCATTG...............................................................................................................................................................................................................................................................................................................................................................................2011.001000001
droBip1
CCTGCATTATCGAGGAGTGTCCGCATTGGGAGGTCGAGGACTGGACCGGTGTAAGTACTTTACCACA------------G--------C--------------------TCCACCCACCGTTTCCCAACAAGTCGTGTAATAATCATGCA---CTTTC-TGTGCTGCAGCCAGAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
CCTGCATTATCGAGGAGTGTCCGCACTGGGAGGTGGAGGACTGGACCGGTGTAAGTACCAAGC-AAAC--------C-AT----------------------TT---------CCCATTTCTACCCAACAAGTCGTGTAATAATCATGCA---CTTTC-TGTGCTGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................GTGGAGGACTGGACCGGT.........................................................................................................................................................................................................................................................................................................................................................1811.0010000000001
droPer2
CCTGCATTATCGAGGAGTGTCCGCACTGGGAGGTGGAGGACTGGACCGGTGTAAGTACCAACC-AAAC--------C-AT----------------------TT---------CCCATTTCTACCCAACAAGTCGTGTAATAATCATGCA---CTTTC-TGTGCTGCAACACGGAACAGGGAACAGGGAA-----TGGGAGAGGGACTCAGACGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CCTGCATTATCGAGGAGTGTCCGCATTGGGAGGTGGAGGACTGGACTGGTGTAAGTAGCA-----------------------------------------------------------ACCAACCAACAAGTCGTGTAATAATCATGCA---CTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
GAGCAAGGAGTAAGGAATATAA-----------------------------------------TGCC---------------------------------------GATCTTGATTCACATGTCTTGACAAAAAATGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTATGCTTATGCAGCAG-AAAGACGCGCCTTAGTAAAGT-----TTCAAGACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
CCTGCATTATCGAGGAGTGCCCACACTGGGAGGTTGAGGATTGGACTGGCGTAAGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CCTGCATTATTGAGGAGTGTCCGCACTGGGAGGTGGAGGACTGGACCGGTGTAAGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 03:18 AM