ID:

dsi_20979

Coordinate:

2r:5592438-5592581 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [2r_5592335_5592437_+]; CDS [2r_5592335_5592437_+]; CDS [2r_5592582_5594005_+]; exon [2r_5592582_5594005_+]; intron [2r_5592438_5592581_+]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------################################################## CGACTTTGCCACTCCCCCAAGGCCGCAATTCAAGGTTCCCAGCGGAGATCGTAAGTAATACACATGCCCACTTAGTTTGGTAACTTTTTATCTAAACATTAATAACGTAAAAGCTTTTCTTTTGGGCGAACTAGTTCTAACTTGGCCAGCTAGTAACATCCAGTTGTTAAATGATCGAATTTCTACATTTGCAGACTCAGATAGCCTGATTGCCGAGGCAATACTCACTGGCAATGTGGACGCT ************************************************((((((........((((((....(((((((((....))).))))))............((((.....))))))))))..(((((((((...)))..))))))(((((......))))).................))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	M024 male body	SRR902008 ovaries	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries
...............................................................................................................................................................................................ATCACTCAGATAGCCTGATTGCCGAGGC.........................	28	3	1	1.00	1	1	0	0	0	0
....................................................................................................................................................................................................TCAGATAGCCTGATTGCCGAG...........................	21	0	1	1.00	1	0	0	1	0	0
.....TTGCCACTCCCCCAAGGCCGCAATT......................................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................................TTTGCAGACTCAGATAGCC......................................	19	0	1	1.00	1	0	1	0	0	0
......................CCGCAATTCAAGGTTCCCAGCGG.......................................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0
............................................................................................................................GGGGAACTAGTTCTAA........................................................................................................	16	1	4	0.25	1	0	0	0	1	0
............................TTCAAGGTCCACAGCGGA......................................................................................................................................................................................................	18	2	15	0.07	1	0	0	0	0	1
...............................................................................................................AGCTTGTCTTTTGGG......................................................................................................................	15	1	15	0.07	1	0	0	0	0	1
..................................................................................................................................CTAGTTCTAACCTGT...................................................................................................	15	2	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................CAATTCACACTGGCAAT.........	17	2	20	0.05	1	0	0	0	1	0

Anti-sense strand reads

GCTGAAACGGTGAGGGGGTTCCGGCGTTAAGTTCCAAGGGTCGCCTCTAGCATTCATTATGTGTACGGGTGAATCAAACCATTGAAAAATAGATTTGTAATTATTGCATTTTCGAAAAGAAAACCCGCTTGATCAAGATTGAACCGGTCGATCATTGTAGGTCAACAATTTACTAGCTTAAAGATGTAAACGTCTGAGTCTATCGGACTAACGGCTCCGTTATGAGTGACCGTTACACCTGCGA ************************************************((((((........((((((....(((((((((....))).))))))............((((.....))))))))))..(((((((((...)))..))))))(((((......))))).................))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	M024 male body	SRR553488 RT_0-2 hours eggs
....................................................................................................................................................CGCTCATTGCAGGTCA................................................................................	16	2	16	0.44	7	5	0	2	0	0
..................................................................GGGTGAAGCAAACCA...................................................................................................................................................................	15	1	10	0.10	1	0	1	0	0	0
...............GGGTTCCGGCGATTAGT....................................................................................................................................................................................................................	17	2	13	0.08	1	1	0	0	0	0
.........................................................................................CAGCTTTGTAATTATCGC.........................................................................................................................................	18	3	20	0.05	1	0	0	0	1	0
...............GGGTTCCGGCGATTAG.....................................................................................................................................................................................................................	16	2	20	0.05	1	1	0	0	0	0
.....AGTGGTGAGGCGGTTCCGG............................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	1
................................................................................................................................................CGGTCGATCATAGAAG....................................................................................	16	2	20	0.05	1	0	1	0	0	0

Generated: 04/23/2015 at 06:08 PM