ID:

dsi_20976

Coordinate:

3l:7963900-7963986 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_7963981_7964172_-]; three_prime_UTR [3l_7963134_7963980_-]; exon [3l_7963134_7964172_-]

Repeatable elements

Name	Class	Family	Strand
(CTG)n	Simple_repeat	Simple_repeat	+

Sense Strand Reads

########################################################################################################################################################################################### ACAACGACGAACTGTATCGCATCCCAGAGCGCCAGCAGCAGCTGAATGATGTATGATATGAGGCCGATGATGAGTATAAGATTGGGACAGCAAACGGAACCAGACAGCGCGGCGGAAGACAGCGGCAATTTCAAAAGCAACAGCAACAGCAGCAGCAGCAACAGCAGCAACATCAAGCACTCAACAG ************************************************...............................((..((.....................((.((........)).))....))..)).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR618934 dsim w501 ovaries	M024 male body
..................................................................................................ACCAGACAGCGCGGCGGAAGACAGT................................................................	25	1	1	1.00	1	1	0	0
.......................................................ATATGAAGCCGATGAGGA..................................................................................................................	18	2	12	0.08	1	0	1	0
.......................................AGATCATTGATGTATGATA.................................................................................................................................	19	3	20	0.05	1	0	0	1
............................................................................TTAGATAGGGACAGCAA..............................................................................................	17	2	20	0.05	1	0	1	0

Anti-sense strand reads

TGTTGCTGCTTGACATAGCGTAGGGTCTCGCGGTCGTCGTCGACTTACTACATACTATACTCCGGCTACTACTCATATTCTAACCCTGTCGTTTGCCTTGGTCTGTCGCGCCGCCTTCTGTCGCCGTTAAAGTTTTCGTTGTCGTTGTCGTCGTCGTCGTTGTCGTCGTTGTAGTTCGTGAGTTGTC ************************************************...............................((..((.....................((.((........)).))....))..)).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M025 embryo	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	M024 male body	M023 head	SRR553486 Makindu_3 day-old ovaries
...................GTAGGGTGTCGCGGTCGT......................................................................................................................................................	18	1	1	5.00	5	5	0	0	0	0	0	0
..................................................CAGACTATACTCCAGCTA.......................................................................................................................	18	2	1	2.00	2	0	2	0	0	0	0	0
....................TAGGGTGTCGCGGTCGT......................................................................................................................................................	17	1	2	1.50	3	3	0	0	0	0	0	0
...................GTAGGGTGTCGCGGTCG.......................................................................................................................................................	17	1	6	1.33	8	8	0	0	0	0	0	0
...................GTAGGGTGTCGCGGTCGTCG....................................................................................................................................................	20	1	1	1.00	1	1	0	0	0	0	0	0
.................................................ACAGACTATACTCCAGCTA.......................................................................................................................	19	2	1	1.00	1	0	1	0	0	0	0	0
.................................................ACAGACTATACTCCAGCTAT......................................................................................................................	20	3	1	1.00	1	0	1	0	0	0	0	0
....................TAGGGTGTCGCGGTCATCGACG.................................................................................................................................................	22	3	1	1.00	1	1	0	0	0	0	0	0
...................GTAGGGTGTCGCGGTCATCG....................................................................................................................................................	20	2	1	1.00	1	1	0	0	0	0	0	0
....................TAGGGTGTCGCGGTCATCG....................................................................................................................................................	19	2	1	1.00	1	1	0	0	0	0	0	0
.............................................................CCAGCTACTACTCATA..............................................................................................................	16	1	1	1.00	1	0	0	1	0	0	0	0
....................TAGGGTGTCGCGGTCG.......................................................................................................................................................	16	1	8	0.75	6	6	0	0	0	0	0	0
..................................................CAGACTATACTCCAGCTAT......................................................................................................................	19	3	3	0.67	2	0	2	0	0	0	0	0
.....................AGGGTGTCGCGGTCG.......................................................................................................................................................	15	1	20	0.45	9	6	0	0	2	0	0	1
.................GAGTAGGGTGTCGCGGTCG.......................................................................................................................................................	19	2	9	0.44	4	0	0	0	0	3	1	0
.....................AGGGTGTCGCGGTCGT......................................................................................................................................................	16	1	6	0.33	2	2	0	0	0	0	0	0
..........................CTCGCGGTCGTCGTCGGC...............................................................................................................................................	18	1	10	0.30	3	0	3	0	0	0	0	0
.............................................................CCAGCTACTACTCATAA.............................................................................................................	17	2	8	0.25	2	0	0	2	0	0	0	0
....................TAGGGTGTCGCGGTCGTA.....................................................................................................................................................	18	2	4	0.25	1	1	0	0	0	0	0	0
................AGAGTAGGGTGTCGCGGTC........................................................................................................................................................	19	2	5	0.20	1	0	0	0	0	0	1	0
...............TCGCGTAGGGTGTCGCGG..........................................................................................................................................................	18	2	7	0.14	1	1	0	0	0	0	0	0
...................GTAGGGTGTCGCGGTCTT......................................................................................................................................................	18	2	7	0.14	1	1	0	0	0	0	0	0
....................TAGGGTTTCGCGGTC........................................................................................................................................................	15	1	7	0.14	1	0	0	0	1	0	0	0
...................GTAGGGTGTCGCGGTCGCCTT...................................................................................................................................................	21	3	8	0.13	1	1	0	0	0	0	0	0
................................................................................................................................AAAGTTTTCCTTGTCGTTA........................................	19	2	9	0.11	1	0	0	0	1	0	0	0
....................TAGGGTCGCGCGGTC........................................................................................................................................................	15	1	9	0.11	1	0	0	0	0	0	0	1
.................................................................................................................................................TGTCGTCTTCGTCGTTGTCGT.....................	21	1	20	0.10	2	1	0	1	0	0	0	0
............................................................GCCAGCTACTACTCATA..............................................................................................................	17	2	13	0.08	1	0	0	1	0	0	0	0
....................TAGGGTGTCGCGGTCGTG.....................................................................................................................................................	18	2	13	0.08	1	1	0	0	0	0	0	0
...................GTAGGGTGTCGCGGTCGC......................................................................................................................................................	18	2	14	0.07	1	1	0	0	0	0	0	0
....................TAGGGTGTCGCGGTCGACGC...................................................................................................................................................	20	3	16	0.06	1	1	0	0	0	0	0	0
............................................................GCCAGCTACTACTCAT...............................................................................................................	16	2	20	0.05	1	0	0	1	0	0	0	0
....................TAGGGTGTCGCGGTCGCCA....................................................................................................................................................	19	3	20	0.05	1	1	0	0	0	0	0	0
.............................................................................................................................................TCGTTGTCGTCGTCGT..............................	16	0	20	0.05	1	1	0	0	0	0	0	0
..............................................................................................................................TTAAAGTTTTCGTATTTGTTG........................................	21	3	20	0.05	1	0	0	0	1	0	0	0
................................................................................................................................................TTGTCGTCGTCGTCGTTG.........................	18	0	20	0.05	1	1	0	0	0	0	0	0
.................................................................................................................................................TGTCGTCTTCGTCGTTGTCGTC....................	22	1	20	0.05	1	0	0	0	1	0	0	0

Generated: 04/24/2015 at 10:34 AM