ID:

dsi_20959

 Coordinate:

3r:17630907-17631056 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-10.1 -9.8 -9.7

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dsi_20959  3r:17630914-17630929 +
  2. node_56041:4005-4020 +
  3. node_6283:387-402 +
star

Sense Strand Reads

GTCTGCCCAATAGTCATAGCCAGCCCATTTATGTGCCCGGAAAGTACTCGGTATGTATGATGATGACCCGGAACGAACCGAACACCCAAACACCACACCCACCCAATCTCCCGCCTCCTTAATCACCAAAAAAATAAAAATGAATGACTCCATTAGCGGCCCCCTAAGGAAAATATTTACAAAATCAACAATGTGAACGAAGAATTTTCTAAAAATGAAATTGATGTTGGCGTTGCTTGAAAAGAAATAA
**************************************************...(((.((((..((...(((......)))..............................((((........(((...................)))........))))((......))..........))..)))))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
................................................................................................................................................................................................................................TGTTGACGTTCCTTGAAAAAAA.... 22 3 2 1.00 2 0 1 0 1 0 0
.............................TATGTGCCCGGAAAGTACTCGGTATG................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.........................................................TGATGATGACCCGGAA................................................................................................................................................................................. 16 0 3 0.67 2 0 2 0 0 0 0
................................................................................................................................................................ACCCTAAGGAAAATATTTAGAAC................................................................... 23 3 2 0.50 1 1 0 0 0 0 0
..............................................................................................................................................................................................ATGTGAACGAAGAATT............................................ 16 0 2 0.50 1 0 0 1 0 0 0
.............................................................................................................................................................................................AATGTAAACGAAGGATTGTCT........................................ 21 3 3 0.33 1 1 0 0 0 0 0
.....................................................TGTCTGATGATGACTCGGA.................................................................................................................................................................................. 19 2 3 0.33 1 0 0 1 0 0 0
...................................................................................................................................................................CTAAGGAAAATATTTAGAACC.................................................................. 21 3 9 0.22 2 0 0 0 0 2 0
................................................................................................................................................................................................................................TGTTGACGTTCCTTGAAAATA..... 21 3 5 0.20 1 1 0 0 0 0 0
................................................................................................................................................................................................................................TGTTGACGTTCCTTGAAAA....... 19 2 6 0.17 1 0 0 0 1 0 0
................................................................................................................................................................................................................................TGTTGACGTTCCTTGAAAAAA..... 21 3 6 0.17 1 1 0 0 0 0 0
.................................................................................................................................................................................................TGAAGGAAGAATTGTTTAAAA.................................... 21 3 14 0.14 2 2 0 0 0 0 0
..........................................................GATGGTGACCCGGAA................................................................................................................................................................................. 15 1 7 0.14 1 0 0 1 0 0 0
.............................................................................................................................................................GGCCCCCTAAGGAAATAGT.......................................................................... 19 3 8 0.13 1 0 0 1 0 0 0
..................................................................................................................................AAAATAACACTGCATGACTC.................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 1
.................................................................................................................................................................................................................................GTTAGCGTTGCTTGGAA........ 17 2 9 0.11 1 0 0 0 1 0 0
............................................................................................................................................................................................CAATGAGAACGAAGAA.............................................. 16 1 9 0.11 1 0 0 0 1 0 0
....................................................................................................................................................................TAAGGAAAATATTTAGAACCT................................................................. 21 3 13 0.08 1 0 0 0 0 1 0
..CTGCCCAATCGTCATGG....................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

CAGACGGGTTATCAGTATCGGTCGGGTAAATACACGGGCCTTTCATGAGCCATACATACTACTACTGGGCCTTGCTTGGCTTGTGGGTTTGTGGTGTGGGTGGGTTAGAGGGCGGAGGAATTAGTGGTTTTTTTATTTTTACTTACTGAGGTAATCGCCGGGGGATTCCTTTTATAAATGTTTTAGTTGTTACACTTGCTTCTTAAAAGATTTTTACTTTAACTACAACCGCAACGAACTTTTCTTTATT
**************************************************...(((.((((..((...(((......)))..............................((((........(((...................)))........))))((......))..........))..)))))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR902009
testis
 SRR618934
dsim w501 ovaries
..........................................................................................................................................................................................TTGTTACCCTTGCTTCTT.............................................. 18 1 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................TGGGCCTTGCTAAGCTTG....................................................................................................................................................................... 18 2 5 1.80 9 1 7 0 0 0 1 0 0
.................................................................................................................................................................GGGATTCCTTTTATAAATCT..................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................TGTGGGTTTGTGGTGTCGGT..................................................................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0
..................................................................................................................................................................GGATTCCTTTTATAAAT....................................................................... 17 0 1 1.00 1 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................TGTTACCCTTGCTTCT............................................... 16 1 3 0.67 2 2 0 0 0 0 0 0 0
..........................................................................................................................................................................................TTGTTACCCTTGCTTCTTC............................................. 19 2 2 0.50 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................GTTACCCTTGCTTCTT.............................................. 16 1 2 0.50 1 1 0 0 0 0 0 0 0
.......................................................AGACTACTACTGGGCCTT................................................................................................................................................................................. 18 1 4 0.50 2 0 0 1 0 1 0 0 0
..................................................................GGGCCTTGCTAAGCTTG....................................................................................................................................................................... 17 2 10 0.40 4 3 0 0 0 1 0 0 0
..........................................................CTACTACTGGGCCTT................................................................................................................................................................................. 15 0 3 0.33 1 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................TGTTACCCTTGCTTCTTC............................................. 18 2 4 0.25 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................TTGTTACCCTTGCTTC................................................ 16 1 6 0.17 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................GTTACACTTGCTTCT............................................... 15 0 6 0.17 1 1 0 0 0 0 0 0 0
.................................................................................TATGGGTGTGTGGTGTGGGTG.................................................................................................................................................... 21 2 10 0.10 1 0 0 0 0 0 0 1 0
................................................................................................................CGAAGGAGTTAGTGGTTTGT...................................................................................................................... 20 3 13 0.08 1 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................TGTTACCCTTGCTTCTTTAG........................................... 20 3 13 0.08 1 1 0 0 0 0 0 0 0
.............................................................................................................GGGCGCAGCAATTGGTGGT.......................................................................................................................... 19 3 14 0.07 1 0 0 0 0 0 0 0 1
...........................................................................................................................................................................................TGTTACCCTTGCTTC................................................ 15 1 15 0.07 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTACCCTTGCTTCTT.............................................. 15 1 20 0.05 1 1 0 0 0 0 0 0 0
................................................................GTGGGCCTTGCTAAGCTTG....................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................TGTTACCCTTGCTTCTC.............................................. 17 2 20 0.05 1 1 0 0 0 0 0 0 0
............................................................ACCGCTGGGCCTTGCT.............................................................................................................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0 0

Generated: 04/23/2015 at 11:55 PM