ID:

dsi_20948

 Coordinate:

3l:3095845-3095994 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.3 -12.2 -12.1

Flybase annnotation

CDS [3l_3095995_3096078_-]; exon [3l_3095995_3096293_-]; intron [3l_3095662_3095994_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTACCCAAATCCTCGGTAAGTTTAGCTTAAAACTAGTAGTTGAAACCACTCTGATTGATGGAAAGTGGAGATAGCAGCAAAATTGCGATTAGAATTGCTCGATAATCGATGGCGAAAAGTGCCACGCCGTCATTGATTTTATTATTGGTCATATGTATGCATGTTTGTGTGTGTGCGGAGGCTGGCGTGTGTATGAGCGTGTTATCGTCGCTTCT
*****************************************************************************************...((((...((((........((.......((((((...........))))))...))........)))).))))************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M025
embryo
 M053
female body
 O002
Head
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
........................TGCGTGGCAATGTACCCAAATC............................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................CGAAAAGTGCCACGCCGT..................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0
..................................................................................................................................................................CGTCATTGATTTTATTATTGGTC................................................................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0
.............ATATGTGACAATGCGTGGCAA........................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..............TATGTGACAATGCGTGGCAATGTACC.................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0
.........................................................................................TTGATGGAAAGTGGAGATAGC............................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
......................AATGCGTGGCAATGTACCC................................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0
.GAAGGCCAGCAAATATGTGACAATGCG.............................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0
.....................CAATGCGTGGCAATGTACCC................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................CTTGAAACTAGTAGTCGA............................................................................................................................................................................ 18 2 2 0.50 1 0 0 0 0 0 0 1 0
...............................................................................................GAAAGTGGATTTAGCCGCAAAATT................................................................................................................................... 24 3 2 0.50 1 0 1 0 0 0 0 0 0
............................................................................................................................................TTGATGGCGAGAAGTGCCA........................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0
........................................................TTAGCTTAAATCTAGT.................................................................................................................................................................................. 16 1 13 0.08 1 0 0 0 0 0 0 0 1
.............................................................................................TGGAAAGTGGTGCCAGCAGC......................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

TCTTCCGGTCGTTTATACACTGTTACGCACCGTTACATGGGTTTAGGAGCCATTCAAATCGAATTTTGATCATCAACTTTGGTGAGACTAACTACCTTTCACCTCTATCGTCGTTTTAACGCTAATCTTAACGAGCTATTAGCTACCGCTTTTCACGGTGCGGCAGTAACTAAAATAATAACCAGTATACATACGTACAAACACACACACGCCTCCGACCGCACACATACTCGCACAATAGCAGCGAAGA
*************************************************************************************...((((...((((........((.......((((((...........))))))...))........)))).))))***************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
..........................................................................................................................................................ACGGTGCGGCAGTAACTAAAA........................................................................... 21 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................................................AGTATATATACGTACCAA................................................. 18 2 14 0.07 1 0 1 0 0
...............................................................................AGGTGAGACTGACTACATT........................................................................................................................................................ 19 3 17 0.06 1 0 0 1 0
.............................CAGTTATATGGGTTGAGGA.......................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0
............................................................................................................................................................GGTGCAGCAATAACTA.............................................................................. 16 2 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:3095795-3096044 - dsi_20948 AGAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTACCCAAATCCTCGGTAAGTTTAG-CTTAAAAC--T---------AGTA--GT--------------------------------------------TGAAACCACTC----------TGA----------------------TT-GATGGA-----------AAG------------TGGAG-----------------------------------------ATAGCAGCAAAATTGCGATTAGAATTGCTCGAT---------AATCG-A---TGGCGAAAAGTGCCACGCCGTCATTGATTTTATTATTGGTC-------ATATGTA--------------T----GCATGTT----TG--TG------T-------------GTGTGCGGAGGCTGG-C------GTGTG----TATGAG----------CGTGTTAT--CGTCGCTTCT
droSec2 scaffold_2:3191687-3191935 - AGAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTACCCAAATCCTCGGTAAGTTTAG-CTTAAAAC--T---------AGTA--GT--------------------------------------------TGAAACCACTC----------TGA----------------------TT-GGGGGA-----------AAG------------TGGAG-----------------------------------------ATAGCAGCAAAATTGCGATTAGAATTGCTCGAT---------AATCG-A---TGGCGAAAAGTGCCACGCCGTCATTGATTTTATTATTGGTC-------ATATGTA--------------T----GCATGTT----TG--TG------T-------------GTGTGCGGAGGCTGA--------ATGTG----TATGAG----------CGTCTTAT--CGTCGCTTCT
dm3 chr3L:3198552-3198801 - AGAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTACCCAAATCCTCGGTAAGTTTCG-CTTAAAAC--T---------ATTA--AT--------------------------------------------TGAAACTATTC----------TGA----------------------TT-G-GGGA-----------AAG------------TGGAG-----------------------------------------ATAGCAGTAAAATTGCGATTAGAATTGCTCGAT---------AATCAAA---TGGCGAAAAGTGCCACGCCGTCATTGATTTTATTATTGGTC-------ATATGTA--------------T----GCATGTT----TG--TA------T-------------GTGTGCGGAGGCTGG-C------GTGTG----TATGAG----------CGTGTTAT--CGGCACTTCT
droEre2 scaffold_4784:5881155-5881408 - AGAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTACCCAAATCTTCGGTAAGTTTCG-CTTAAAAC--T---------AATA--GT--------------------------------------------TGAAACCACTC----------TGA----------------------TT-AAGGGA-----------AAG------------TGGAG-----------------------------------------ATAACAGCAAAAGGTTGATTAAAATTGCTTGAT---------AATCA-A---TGGCGAAAAGTGCCACGCCGTCATTGATTTTATTATTGGTC-------ATATGTA--------------T----GCATGTT----TG--TA--CACAT-------------GTGTGCGGAGGCTGG-C------GTGTG----TATGAG----------ACTGTTAT--CGGCACTTCT
droYak3 3L:3743832-3744081 - AGAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTACCCAAATCTTCGGTAAGTTTCG-CTTAAAAC--T---------ATTA--GT--------------------------------------------TAAAACCACTC----------TGA----------------------TT-AGGGGA-----------AAG------------TGGAG-----------------------------------------ATAACAGCAAAATTGCGATTAGAATTGCTCGAT---------AATCA-A---TGGTGAAAAGTGCCACGCCGTCATTGATTTTATTATTGGTC-------ATATGCA--------------T----GCATGTT----TG--TA------T-------------GTGTGCGGAGGCTGG-C------GTGTG----TATGAC----------AGTGTTAT--CGGCACTTCT
droEug1 scf7180000409466:922890-923152 - AGAAGGCCAGCAAATATGTTACAATGCGTGGCAATGTACCCAAATCCTCGGTAAGTGTTA-TCTAAAAA--G---TT----GACT--GT--------------------------------------------C-AAACAAGAC----------CGA----------------------TT-AGGATA-----------ATG------------CGGAG-----------------------------------------AAAACAGTTAATATAAGACCAGAATTAGCCGAT---------AATCA-A---TTGTGAGAAGTGCCACGCCGTCATTGATTTTATTATTGGTAACGT-GCATATGTA--------------T----GTACATATGTTTA--TA--GCTAT-------------GTGTGCGGAAGCTGG-T--------GTG----TGCGAG----------AGTGTTAT--CGGTACTTCT
droBia1 scf7180000302428:2548082-2548330 - AGAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTCCCCAAGTCCTCGGTGAGTTTCG-CACAAAAC--G---------CGCA--GA--------------------------------------------TACAACATAGA----------TGA----------------------TT-AGGGTA-----------AAA------------CATAG-----------------------------------------ATAGTACCAAGAGCAAGGCCAGATTTAGCCGAT---------AATCA-A---TTGCCGAAAGTGCCACGCCGTCATTGATTTTATTAAGGCCG-------ATGTAGA--------------T----G--------------TA------TGT--GTGC--------GGAGGAAGCTGG-TCTGC--GTGTG----TGTGAG----------GGTGTTAT--CTGCACTTCT
droTak1 scf7180000415378:191915-192165 + AGAAGGCCAGCAAATATGTGACAATGCGTGGCAACGTACCCAAATCCTCGGTGAGTTTTG-CCTTTAAT--C---------GCTA--GT--------------------------------------------AAAAACATGTA----------TGT----------------------TT-AAGGGA-----------AAA------------CAAAG-----------------------------------------ATAACACTGAAAGTTGGATTCCAATTAGCCGAT---------AATCA-A---TGGCCAAAAGTGCCACGCCGTCATTGATTTTATTATGGGTAATG-----TATGTA--------------T----GGATGT------G--TG------C-------------GTGTGAGGAAGCTGGTC------GTGTG----TGTGTG----------TGTGTTAT--CGGCACTTCT
droEle1 scf7180000491249:2080940-2081175 + AGAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTACCCAAATCCTCGGTAAGTTTTCGGTTAAATA--T---------GATA--GT--------------------------------------------TAGAAGTATTA----------ACA----------------------AA-AAGGTA-----------AAG------------TGGAG-----------------------------------------ATAAGGGTAAAACTAATACCGGAATATGCCGAT---------AATCA-A---TTGCAAAAAGTGCCACGCCGTCATTGATTTTATTATTGCT-----------------------------------------------------------------------GTGTGAGGAAGCTGT-TATGTGTGAGTG----TGTGTG----------TGTGTTAT--CGGCACTTCT
droRho1 scf7180000777063:58360-58600 + AGAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTACCCAAATCCTCGGTAAGTTTTCGATTTGAAA--T---------GGTA--GT--------------------------------------------TAAAAGTGCTA----------CTG----------------------AG-AAGGGA-----------AAG------------TGGAG-----------------------------------------ACAACGGTAAAAGTAATATCAGAATAAGCCGAT---------AATCA-A---TTGCGAAAAGTGCCACGCCGTCATTGATTTTATTATTGCTC-------GTGCGT--------------------------T----TG--TA------TGT-----------GTGTGAGGAAGCTGG-C------CTGT--------GTG----------TGTGTTAT--CGGCAGTTCT
droFic1 scf7180000454105:1516499-1516742 - AAAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTTCCCAAATCCTCGGTAAGATTTCATTTACAAT--C---------TGCT--GT--------------------------------------------GAAAAGAACTA------------A-------------------------ATGGAA-----------AAG------------TGGAG-----------------------------------------ATAAGAATAAAACTATTATCCGAATA-GCCGAT---------AATCA-A---TTGCCAAAAGTGCCACGCCGTCATTGATTTTATTATTGCTG-------CTGCGTA--------------T----GC--GTT----TG--CA------TGT-----------GTGCGAGGAAGCTGG-T--------GTG----TGCGTG----------TGTGTTAT--CGGCTCTTCT
droKik1 scf7180000302577:1383887-1384149 - AGAAGGCCAGCAAATATGTGACGATGCGTGGCAATGTCCCCAAATCCTCGGTGAGTGTGGGCTTAAGAT--TAAGCTAAAA--TA------------------------------------------------------GGCTC----------CGAAAGTGCATAC----GGAATTAT---------------------------------------------------------------------------------ATAGAAGGAAAAT-G-TATCTGG---AGGCGAT---------AATCA-A---TTGCAAAAAGTGCCACGCCGTCATTGATTTTATTGCTGAT------GCGTGTGTA--------------T----GTGTGTGTGT-TG--TGTGTCTGT--GTGAGGAGGGC---GGGGGAAGCTGG-T--------GTT----TGTGCG----------AGTGTTAT--CGGCTCTTCT
droAna3 scaffold_13337:7502803-7503038 - AGAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTCCCCAAATCCTCTGTAAGTAAAT-CGTT------------------------------------------GCCC---CCATCTA------------TACAGCTACCC------------------------------AGTCTTT--GGGGCCCAAAGA--CTCA---------------------------TTCGCAAAA-----------------------ATAACAACAAACC------------GGGTCGGCACG------GGTCC-T---CCGCAAAAAGTGCCACGCCGTCATTGATTTTATTGTTGC-------------------------------------ATGTG----TG--TG------A-------------GTGTG---GGGCTG----------TCTG----TACGAG----------AACGTTAT--CGCCTCTTCT
droBip1 scf7180000395543:164681-164908 - AGAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTCCCCAAATCCTCTGTAAGTAAAT-CGTT------------------------------------------GTCC---CC--CCG------------TACAG----CC----------CC----------------ACAG----C--AGGTCCCAAAAA----CA---------------------------TTCGCAAAA-----------------------ATAACAACAAACC------------GGGTCGACACG------GGTCC-T---CCGCAAAAAGTGCCACGCCGTCATTGATTTTATTGTTGC-------------------------------------ATGTG----TG--TG------A-------------GTGTG---AGGCTG----------TCAG----TATGAG----------AACGTTAT--CGCCTCTTCT
dp5 XR_group6:4030914-4031156 + AGAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTACCAAAATCCTCGGTAAGTTTTT-CTTTAAAA--T----GAGAA--TA--GC----------------------TCGC-A----------------------------------T--CAAAAATGCATAC-ATC------------------------------------------------------------------TCGCACGAGCCTGATAG------------------------------------------------AGTCA-A---TCGCAAAAAGTGCCACGCCGTCATTGATTTTATTATTGCTT-------GCTGTTGTGTTCGTGCGCCAATGTGTGCGTGTG----CG--TG--TCTGT--GTGTGG--------GGAAGAAGCTGG-T--------G----------------------TATGCTAT--CGCTTCTTC-
droPer2 scaffold_9:2322967-2323209 + AGAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTACCAAAATCCTCGGTAAGTTTTT-CTTTAAAA--T----GAGAA--TA--GC----------------------TCGC-A----------------------------------T--CAAAAATGCATAC-ATC------------------------------------------------------------------TCGCACGAGCCTGATAG------------------------------------------------AGTCA-A---TCGCAAAAAGTGCCACGCCGTCATTGATTTTATTATTGCTT-------GCTGTTGTGTTCGTGCGCCAATGTGTGCGTGTG----CG--TG--TCTGT--GTGTGG--------GGAAGAAGCTGG-T--------G----------------------TATGCTAT--CGCTTCTTC-
droWil2 scf2_1100000004762:5025059-5025331 - AGAAGGCCAGTAAATATGTAACAATGCGTGGCAATGTACCCAAATCGTCGGTAAGTAAAT-ACAT------------------------------------------A---TTGC-A----------------------------------T--CGAAAATGCATG-----GAAATTCTAT--AGGAAACAAAAAGAA-GAATAGTAACAAATTAAGAGATAACAACAG--------TGGCACGAGCCTAAAA----CAG---------AACC------------AGGGCTTCAAGTTAATTCATCA-A---TCGCGA-AAGTGCCACGCCGTCATTGATTTTACTTGTG---------------AC--------------T----GCCTCTT----TG--TG------T-------------TTGTG-------------------TGTGTATGT--ACG----------GATGTTATCTCGCTGCTTCT
droVir3 scaffold_13049:8234174-8234468 - dvi_18942 AAAAGGCCAGCAAATATGTGACGATGCGTGGCAATGTACCCAAATCCTCGGTAGGTGTT-----AAAATC-CGTACA----AAA-----TTGGCATGTTTTTAAT---------------GTATAATATGGGGTAACAGTGTTATCCACTGCCACAA----------------------CT-GCAAAA-----------CAA------------TAGAGATAATGGCAC--------CTGCACGAGCCAACTAGAT--------------------------------TCT-A---------TACCA-A---TTCCGAAAAGTGCCACGCCGTCATTGATTTTATTGTTGTT--------GCAAGTGTGCA----------T----GTGCGTATCT--GTGTG---------------------TGTA--------TG-T------GTGAG----TGTGAGCGTTGAGTCGAATGTTAT--CGCTGCTTCT
droMoj3 scaffold_6680:11895525-11895798 - AGAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTACCCAAATCCTCGGTAGGTGTT-----AAAATCTTGAACT----AAA-----TTTTCTGTTTTTTGATGCAGTT---GT--AAATCTA------------A----T---CACTGCCTCAA--CTGCAAAGG---AACAG----C---------------------------------AAGAGATAATGACAC--------CTGCATGGGTCTCATAAAAACA---------------------------------A---------ATCCA-A---TAGGAAAAAGTGCCACGCCGTCATTGATTTTGTTGCAGTGC-------TGATATG--------------T----GTAT--T----TG--TA------TGC-----------GTGTG-----------------------------TGAGAGTTGAAT--CGAGTTAT--CGCTGCTTCT
droGri2 scaffold_15110:7264680-7264946 - AAAAGGCTAGCAAATATGTGACGATGCGTGGCAATGTACCCAAATCCTCGGTAGGTGCAA-AAAAAAAC--T---------GAAATT--TTGGCAAATTT-------GTTT---GT--GTGTATA------------A----TC----------AG------------------------CAAGTGCA-----------GAA------------TGCAGATAACGTCAT--------TTGCACGCGTCAACAAGAATCA---------------------------------A---------AACCA-ATAACAGCGAAAAGTGCCACGCCGTCATTGGTTTTGCTGTTGTTGTTGTTGCCTGTGTG--------------T----GCATGTT----TG--CA------A-------------GTGTG---------------------------TGTGAG--TTGACATTAATGTTAT--CGCTGCTTCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTACCCAAATCCTCGGTAAGTTTAG-CTTAAAAC--T---------AGTA--GT--------------------------------------------TGAAACCACTC----------TGA----------------------TT-GATGGA-----------AAG------------TGGAG-----------------------------------------ATAGCAGCAAAATTGCGATTAGAATTGCTCGAT---------AATCG-A---TGGCGAAAAGTGCCACGCCGTCATTGATTTTATTATTGGTC-------ATATGTA--------------T----GCATGTT----TG--TG------T-------------GTGTGCGGAGGCTGG-C------GTGTG----TATGAG----------CGTGTTAT--CGTCGCTTCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................TGCGTGGCAATGTACCCAAATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................CGAAAAGTGCCACGCCGT..............................................................................................................................................................1811.00100000100000000000
..........................................................................................................................................................................................................................................................................................................................................CGTCATTGATTTTATTATTGGTC-------...................................................................................................................................2311.00100100000000000000
.............ATATGTGACAATGCGTGGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
..............TATGTGACAATGCGTGGCAATGTACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
...................................................................................................................................................................................TT-GATGGA-----------AAG------------TGGAG-----------------------------------------ATAGC..................................................................................................................................................................................................................................2111.00100000000001000000
......................AATGCGTGGCAATGTACCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
.GAAGGCCAGCAAATATGTGACAATGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
.....................CAATGCGTGGCAATGTACCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000100000
droSec2
AGAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTACCCAAATCCTCGGTAAGTTTAG-CTTAAAAC--T---------AGTA--GT--------------------------------------------TGAAACCACTC----------TGA----------------------TT-GGGGGA-----------AAG------------TGGAG-----------------------------------------ATAGCAGCAAAATTGCGATTAGAATTGCTCGAT---------AATCG-A---TGGCGAAAAGTGCCACGCCGTCATTGATTTTATTATTGGTC-------ATATGTA--------------T----GCATGTT----TG--TG------T-------------GTGTGCGGAGGCTGA--------ATGTG----TATGAG----------CGTCTTAT--CGTCGCTTCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........AAATATGTGACAATGCGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020020
...............ATGTGACAATGCGTGGCAATGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020020
AGAAGGCCAGCAAATATGTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
...................................................................................................................................................................................................................................................................................................AT---------AATCG-A---TGGCGAAAAGTG.......................................................................................................................................................................2011.0010100
..............TATGTGACAATGCGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
............AATATGTGACAATGCGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
........AGCAAATATGTGACAATGCGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
.............ATATGTGACAATGCGTGGCAATGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.GAAGGCCAGCAAATATGTGACAATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
.........................................................................................................................................................................................................................................................................AGCAAAATTGCGATTAGAATTGCTCGAT---------.............................................................................................................................................................................................2811.0010010
..............................................................................................................................................................................................................................................................................................................AATCG-A---TGGCGAAAAGTG.......................................................................................................................................................................1811.0010001
.GAAGGCCAGCAAATATGTGACAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
...................................................................................................................................................................................................................................................................................................................................GCCACGCCGTCATTGATTTTA...................................................................................................................................................2111.0010100
........AGCAAATATGTGACAATGCGTGGCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
............AATATGTGACAATGCGTGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.............ATATGTGACAATGCGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCGGAGGCTGA--------ATG..........................................1811.0010001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGA--------ATGTG----TATGAG----------CG..................1811.0010010
......................AATGCGTGGCAATGTACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
dm3
AGAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTACCCAAATCCTCGGTAAGTTTCG-CTTAAAAC--T---------ATTA--AT--------------------------------------------TGAAACTATTC----------TGA----------------------TT-G-GGGA-----------AAG------------TGGAG-----------------------------------------ATAGCAGTAAAATTGCGATTAGAATTGCTCGAT---------AATCAAA---TGGCGAAAAGTGCCACGCCGTCATTGATTTTATTATTGGTC-------ATATGTA--------------T----GCATGTT----TG--TA------T-------------GTGTGCGGAGGCTGG-C------GTGTG----TATGAG----------CGTGTTAT--CGGCACTTCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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..........CAAATATGTGACAATGCGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................AA---TGGCGAAAAGTGCCACGCCGTCATTGA........................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.........GCAAATATGTGACAATGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................TGGCAATGTACCCAAATCCTCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............ATGTGACAATGCGTGGCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................ATTGCTCGAT---------AATCAAA---TGGC...............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................GTAAAATTGCGATTAGAATTG............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................................................................................................................................................................................................................................GCGATTAGAATTGCTCGAT---------AA...........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TT-G-GGGA-----------AAG------------TGGAG-----------------------------------------ATAGC..................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GAAGGCCAGCAAATATGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATGCGTGGCAATGTACCCAAATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................C----------TGA----------------------TT-G-GGGA-----------AAG------------TGGAG-----------------------------------------A......................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................ACTATTC----------TGA----------------------TT-G-GGGA-----------AAG------------.....................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................ATTGGTC-------ATATGTA--------------T----GCATGTT----..............................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGG-C------GTGTG----TATGAG----------CGT.................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TATGTGACAATGCGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TG--TA------T-------------GTGTGCGGAGGCC.......................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTACCCAAATCTTCGGTAAGTTTCG-CTTAAAAC--T---------AATA--GT--------------------------------------------TGAAACCACTC----------TGA----------------------TT-AAGGGA-----------AAG------------TGGAG-----------------------------------------ATAACAGCAAAAGGTTGATTAAAATTGCTTGAT---------AATCA-A---TGGCGAAAAGTGCCACGCCGTCATTGATTTTATTATTGGTC-------ATATGTA--------------T----GCATGTT----TG--TA--CACAT-------------GTGTGCGGAGGCTGG-C------GTGTG----TATGAG----------ACTGTTAT--CGGCACTTCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........AAATATGTGACAATGCGTGGCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
.........GCAAATATGTGACAATGCGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
...............ATGTGACAATGCGTGGCAATGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
........AGCAAATATGTGACAATGCGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.GAAGGCCAGCAAATATGTGACAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
...........AAATATGTGACAATGCGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
................................AATGTACCCAAATCTTCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
.............ATATGTGACAATGCGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
....GGCCAGCAAATATGTGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000
...................GACAATGCGTGGCAATGTACCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000
...AGGCCAGCAAATATGTGACAATGCGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
.........GCAAATATGTGACAATGCGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
...........AAATATGTGACAATGCGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
...................GACAATGCGTGGCAATGTACCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
droYak3
AGAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTACCCAAATCTTCGGTAAGTTTCG-CTTAAAAC--T---------ATTA--GT--------------------------------------------TAAAACCACTC----------TGA----------------------TT-AGGGGA-----------AAG------------TGGAG-----------------------------------------ATAACAGCAAAATTGCGATTAGAATTGCTCGAT---------AATCA-A---TGGTGAAAAGTGCCACGCCGTCATTGATTTTATTATTGGTC-------ATATGCA--------------T----GCATGTT----TG--TA------T-------------GTGTGCGGAGGCTGG-C------GTGTG----TATGAC----------AGTGTTAT--CGGCACTTCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................AATGCGTGGCAATGTACCCAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00201100000000
.GAAGGCCAGCAAATATGTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200100010000
..........CAAATATGTGACAATGCGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
.........................GCGTGGCAATGTACCCAAATCTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
............AATATGTGACAATGCGTGGCAATGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.............ATATGTGACAATGCGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
...........AAATATGTGACAATGCGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000
...AGGCCAGCAAATATGTGACAATGCGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
AGAAGGCCAGCAAATATGTGACAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.......................ATGCGTGGCAATGTACCCAAATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
............AATATGTGACAATGCGTGGCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
..AAGGCCAGCAAATATGTGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
droEug1
AGAAGGCCAGCAAATATGTTACAATGCGTGGCAATGTACCCAAATCCTCGGTAAGTGTTA-TCTAAAAA--G---TT----GACT--GT--------------------------------------------C-AAACAAGAC----------CGA----------------------TT-AGGATA-----------ATG------------CGGAG-----------------------------------------AAAACAGTTAATATAAGACCAGAATTAGCCGAT---------AATCA-A---TTGTGAGAAGTGCCACGCCGTCATTGATTTTATTATTGGTAACGT-GCATATGTA--------------T----GTACATATGTTTA--TA--GCTAT-------------GTGTGCGGAAGCTGG-T--------GTG----TGCGAG----------AGTGTTAT--CGGTACTTCTSizeHit CountTotal NormTotal
No Reads
droBia1
AGAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTCCCCAAGTCCTCGGTGAGTTTCG-CACAAAAC--G---------CGCA--GA--------------------------------------------TACAACATAGA----------TGA----------------------TT-AGGGTA-----------AAA------------CATAG-----------------------------------------ATAGTACCAAGAGCAAGGCCAGATTTAGCCGAT---------AATCA-A---TTGCCGAAAGTGCCACGCCGTCATTGATTTTATTAAGGCCG-------ATGTAGA--------------T----G--------------TA------TGT--GTGC--------GGAGGAAGCTGG-TCTGC--GTGTG----TGTGAG----------GGTGTTAT--CTGCACTTCTSizeHit CountTotal NormTotal
No Reads
droTak1
AGAAGGCCAGCAAATATGTGACAATGCGTGGCAACGTACCCAAATCCTCGGTGAGTTTTG-CCTTTAAT--C---------GCTA--GT--------------------------------------------AAAAACATGTA----------TGT----------------------TT-AAGGGA-----------AAA------------CAAAG-----------------------------------------ATAACACTGAAAGTTGGATTCCAATTAGCCGAT---------AATCA-A---TGGCCAAAAGTGCCACGCCGTCATTGATTTTATTATGGGTAATG-----TATGTA--------------T----GGATGT------G--TG------C-------------GTGTGAGGAAGCTGGTC------GTGTG----TGTGTG----------TGTGTTAT--CGGCACTTCTSizeHit CountTotal NormTotal
No Reads
droEle1
AGAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTACCCAAATCCTCGGTAAGTTTTCGGTTAAATA--T---------GATA--GT--------------------------------------------TAGAAGTATTA----------ACA----------------------AA-AAGGTA-----------AAG------------TGGAG-----------------------------------------ATAAGGGTAAAACTAATACCGGAATATGCCGAT---------AATCA-A---TTGCAAAAAGTGCCACGCCGTCATTGATTTTATTATTGCT-----------------------------------------------------------------------GTGTGAGGAAGCTGT-TATGTGTGAGTG----TGTGTG----------TGTGTTAT--CGGCACTTCTSizeHit CountTotal NormTotal
No Reads
droRho1
AGAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTACCCAAATCCTCGGTAAGTTTTCGATTTGAAA--T---------GGTA--GT--------------------------------------------TAAAAGTGCTA----------CTG----------------------AG-AAGGGA-----------AAG------------TGGAG-----------------------------------------ACAACGGTAAAAGTAATATCAGAATAAGCCGAT---------AATCA-A---TTGCGAAAAGTGCCACGCCGTCATTGATTTTATTATTGCTC-------GTGCGT--------------------------T----TG--TA------TGT-----------GTGTGAGGAAGCTGG-C------CTGT--------GTG----------TGTGTTAT--CGGCAGTTCTSizeHit CountTotal NormTotal
No Reads
droFic1
AAAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTTCCCAAATCCTCGGTAAGATTTCATTTACAAT--C---------TGCT--GT--------------------------------------------GAAAAGAACTA------------A-------------------------ATGGAA-----------AAG------------TGGAG-----------------------------------------ATAAGAATAAAACTATTATCCGAATA-GCCGAT---------AATCA-A---TTGCCAAAAGTGCCACGCCGTCATTGATTTTATTATTGCTG-------CTGCGTA--------------T----GC--GTT----TG--CA------TGT-----------GTGCGAGGAAGCTGG-T--------GTG----TGCGTG----------TGTGTTAT--CGGCTCTTCTSizeHit CountTotal NormTotal
No Reads
droKik1
AGAAGGCCAGCAAATATGTGACGATGCGTGGCAATGTCCCCAAATCCTCGGTGAGTGTGGGCTTAAGAT--TAAGCTAAAA--TA------------------------------------------------------GGCTC----------CGAAAGTGCATAC----GGAATTAT---------------------------------------------------------------------------------ATAGAAGGAAAAT-G-TATCTGG---AGGCGAT---------AATCA-A---TTGCAAAAAGTGCCACGCCGTCATTGATTTTATTGCTGAT------GCGTGTGTA--------------T----GTGTGTGTGT-TG--TGTGTCTGT--GTGAGGAGGGC---GGGGGAAGCTGG-T--------GTT----TGTGCG----------AGTGTTAT--CGGCTCTTCTSizeHit CountTotal NormTotal
No Reads
droAna3
AGAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTCCCCAAATCCTCTGTAAGTAAAT-CGTT------------------------------------------GCCC---CCATCTA------------TACAGCTACCC------------------------------AGTCTTT--GGGGCCCAAAGA--CTCA---------------------------TTCGCAAAA-----------------------ATAACAACAAACC------------GGGTCGGCACG------GGTCC-T---CCGCAAAAAGTGCCACGCCGTCATTGATTTTATTGTTGC-------------------------------------ATGTG----TG--TG------A-------------GTGTG---GGGCTG----------TCTG----TACGAG----------AACGTTAT--CGCCTCTTCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............ATATGTGACAATGCGTGGCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000002
...................GACAATGCGTGGCAATGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000002
..........CAAATATGTGACAATGCGTGGCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002110000
...............ATGTGACAATGCGTGGCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
AGAAGGCCAGCAAATATGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
...........AAATATGTGACAATGCGTGGCAATGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...............ATGTGACAATGCGTGGCAATGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.............ATATGTGACAATGCGTGGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
......CCAGCAAATATGTGACAATGCGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
............AATATGTGACAATGCGTGGCAATGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
.............................................................................................................................................................................................................................................................................................................................................CATTGATTTTATTGTTGC-------------------------------------ATGTG----C.............................................................................................2411.001010000
........AGCAAATATGTGACAATGCGTGGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
............AATATGTGACAATGCGTGGCAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000
........AGCAAATATGTGACAATGCGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
.........GCAAATATGTGACAATGCGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
......................AATGCGTGGCAATGTCCCCAAATCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................G------A-------------GTGTG---GGGCTG----------TCTG----TACGA...............................2211.001100000
.........GCAAATATGTGACAATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
...........AAATATGTGACAATGCGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
...............ATGTGACAATGCGTGGCAATGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
droBip1
AGAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTCCCCAAATCCTCTGTAAGTAAAT-CGTT------------------------------------------GTCC---CC--CCG------------TACAG----CC----------CC----------------ACAG----C--AGGTCCCAAAAA----CA---------------------------TTCGCAAAA-----------------------ATAACAACAAACC------------GGGTCGACACG------GGTCC-T---CCGCAAAAAGTGCCACGCCGTCATTGATTTTATTGTTGC-------------------------------------ATGTG----TG--TG------A-------------GTGTG---AGGCTG----------TCAG----TATGAG----------AACGTTAT--CGCCTCTTCTSizeHit CountTotal NormTotal
No Reads
dp5
AGAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTACCAAAATCCTCGGTAAGTTTTT-CTTTAAAA--T----GAGAA--TA--GC----------------------TCGC-A----------------------------------T--CAAAAATGCATAC-ATC------------------------------------------------------------------TCGCACGAGCCTGATAG------------------------------------------------AGTCA-A---TCGCAAAAAGTGCCACGCCGTCATTGATTTTATTATTGCTT-------GCTGTTGTGTTCGTGCGCCAATGTGTGCGTGTG----CG--TG--TCTGT--GTGTGG--------GGAAGAAGCTGG-T--------G----------------------TATGCTAT--CGCTTCTTC-SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............ATATGTGACAATGCGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030300000000
..........................................................................................................................................................................C------------------------------------------------------------------TCGCACGAGCCTGATAG------------------------------------------------AGT..........................................................................................................................................................................................2112.0020200000000
..........................CGTGGCAATGTACCAAAATCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...............................CAATGTACCAAAATCCTCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
......................AATGCGTGGCAATGTACCAAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
..............TATGTGACAATGCGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
...............ATGTGACAATGCGTGGCAATGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
........AGCAAATATGTGACAATGCGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.GAAGGCCAGCAAATATGTGACAATGCGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010000000
........AGCAAATATGTGACAATGCGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
......................AATGCGTGGCAATGTACCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
.................GTGACAATGCGTGGCAATGTACCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100000
..........CAAATATGTGACAATGCGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000001000
...........AAATATGTGACAATGCGTGGCAATGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
...........AAATATGTGACAATGCGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................CTT-------GCTGTTGTGTTCGTGCGC.................................................................................................................2111.0010100000000
.......CAGCAAATATGTGACAATGCGTGGCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
...........AAATATGTGACAATGCGTGGCAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
..............................GCAATGTACCAAAATCCTCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
................................................................................A--TA--GC----------------------TCGC-A----------------------------------T--CAAAAATGCA.......................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................CAATGCGTGGCAATGTACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
...............ATGTGACAATGCGTGGCAATGTACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001000000
...............................................................................................................................................................................................................................................GCACGAGCCTGATAG------------------------------------------------AGTCA-A---TCG................................................................................................................................................................................2411.0010010000000
.............ATATGTGACAATGCGTGGCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.......CAGCAAATATGTGACAATGCGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
............AATATGTGACAATGCGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.GAAGGCCAGCAAATATGTGACAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
................TGTGACAATGCGTGGCAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
AGAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTACCAAAATCCTCGGTAAGTTTTT-CTTTAAAA--T----GAGAA--TA--GC----------------------TCGC-A----------------------------------T--CAAAAATGCATAC-ATC------------------------------------------------------------------TCGCACGAGCCTGATAG------------------------------------------------AGTCA-A---TCGCAAAAAGTGCCACGCCGTCATTGATTTTATTATTGCTT-------GCTGTTGTGTTCGTGCGCCAATGTGTGCGTGTG----CG--TG--TCTGT--GTGTGG--------GGAAGAAGCTGG-T--------G----------------------TATGCTAT--CGCTTCTTC-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........AAATATGTGACAATGCGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
...................................................................................................................................................................ATAC-ATC------------------------------------------------------------------TCGCACGAGCCTGATAG------------------------------------------------AGTC.........................................................................................................................................................................................2811.001100000
...........AAATATGTGACAATGCGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
........AGCAAATATGTGACAATGCGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000
............AATATGTGACAATGCGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
................................................................................................................................................................................................................................................................................................................................................................T-------GCTGTTGTGTTCGTGCGC.................................................................................................................1911.001010000
droWil2
AGAAGGCCAGTAAATATGTAACAATGCGTGGCAATGTACCCAAATCGTCGGTAAGTAAAT-ACAT------------------------------------------A---TTGC-A----------------------------------T--CGAAAATGCATG-----GAAATTCTAT--AGGAAACAAAAAGAA-GAATAGTAACAAATTAAGAGATAACAACAG--------TGGCACGAGCCTAAAA----CAG---------AACC------------AGGGCTTCAAGTTAATTCATCA-A---TCGCGA-AAGTGCCACGCCGTCATTGATTTTACTTGTG---------------AC--------------T----GCCTCTT----TG--TG------T-------------TTGTG-------------------TGTGTATGT--ACG----------GATGTTATCTCGCTGCTTCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................ATGCGTGGCAATGTACCCAAATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00201010
...................AACAATGCGTGGCAATGTACCCAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00202000
.............................GGCAATGTACCCAAATCGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00201010
.................GTAACAATGCGTGGCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...................AACAATGCGTGGCAATGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...............................................................................................................................................................................................................................................................................................................ATCA-A---TCGCGA-AAGTGCCACGCCGTC.............................................................................................................................................................2611.00101000
.............ATATGTAACAATGCGTGGCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
................................................................................................................................................................................TCTAT--AGGAAACAAAAAGA......................................................................................................................................................................................................................................................................................................1911.00100010
.............ATATGTAACAATGCGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
................................AATGTACCCAAATCGTCGGTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
........AGTAAATATGTAACAATGCGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
......................AATGCGTGGCAATGTACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001
..............................................................................................................................................................................................................................................................................................................................................................................C--------------T----GCCTCTT----TG--TG------T-------------TTGTG-------------------TGTG........................................2311.00100010
.......CAGTAAATATGTAACAATGCGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
..................TAACAATGCGTGGCAATGTACCCAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACG----------GATGTTATCTCGCTGCT...2011.00110000
................TGTAACAATGCGTGGCAATGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
.........GTAAATATGTAACAATGCGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.............................GGCAATGTACCCAAATCGTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.........GTAAATATGTAACAATGCGTGGCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
................................................................................................................................................................................................................................................CACGAGCCTAAAA----CAG---------AACC------------AGGGCT........................................................................................................................................................................................................2611.00101000
.........GTAAATATGTAACAATGCGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
droVir3
AAAAGGCCAGCAAATATGTGACGATGCGTGGCAATGTACCCAAATCCTCGGTAGGTGTT-----AAAATC-CGTACA----AAA-----TTGGCATGTTTTTAAT---------------GTATAATATGGGGTAACAGTGTTATCCACTGCCACAA----------------------CT-GCAAAA-----------CAA------------TAGAGATAATGGCAC--------CTGCACGAGCCAACTAGAT--------------------------------TCT-A---------TACCA-A---TTCCGAAAAGTGCCACGCCGTCATTGATTTTATTGTTGTT--------GCAAGTGTGCA----------T----GTGCGTATCT--GTGTG---------------------TGTA--------TG-T------GTGAG----TGTGAGCGTTGAGTCGAATGTTAT--CGCTGCTTCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................GTGACGATGCGTGGCAATGTACCCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002000002000000000000000000000000000000000000000000000000000000000
..............TATGTGACGATGCGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002001001000000000000000000000000000000000000000000000000000000000
......................GATGCGTGGCAATGTACCCAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002000000000000000010000000000000000001000000000000000000000000000
........AGCAAATATGTGACGATGCGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000000000200000000000000000000000000000
..........................................................T-----AAAATC-CGTACA----AAA-----TTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........GCAAATATGTGACGATGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
..........................CGTGGCAATGTACCCAAATCCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
.............ATATGTGACGATGCGTGGCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000010000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TGCGTATCT--GTGTG---------------------TGTA--------TG-....................................................2011.001000000000000000000001000000000000000000000000000000000000000000
.............ATATGTGACGATGCGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................GATTTTATTGTTGTT--------GCAAGTGT...........................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...........AAATATGTGACGATGCGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000100000000000000000000000000000000000000000000000000000
...........AAATATGTGACGATGCGTGGCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000100000000000000000000000
...................................GTACCCAAATCCTCGGTAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
......................GATGCGTGGCAATGTACCCAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
.......CAGCAAATATGTGACGATGCGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................ATTGATTTTATTGTTGTT--------GCAAGTGT...........................................................................................................................2611.001000001000000000000000000000000000000000000000000000000000000000
.......CAGCAAATATGTGACGATGCGTGGCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
..........CAAATATGTGACGATGCGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
......................................CCCAAATCCTCGGTAGGTGTT-----...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
.............ATATGTGACGATGCGTGGCAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
.AAAGGCCAGCAAATATGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.........GCAAATATGTGACGATGCGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
........AGCAAATATGTGACGATGCGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
.............ATATGTGACGATGCGTGGCAATGTACCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000010000000000000000000000000000000000000000000
...........AAATATGTGACGATGCGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000010000000000000000000000000
.............................GGCAATGTACCCAAATCCTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
..........................................................................................................................................................CAA----------------------CT-GCAAAA-----------CAA------------TAGAGA...............................................................................................................................................................................................................................................................................2011.001000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................ATTGATTTTATTGTTGTT--------A..................................................................................................................................1960.171000000000000000000000000000000000000100000000000000000000000000
droMoj3
AGAAGGCCAGCAAATATGTGACAATGCGTGGCAATGTACCCAAATCCTCGGTAGGTGTT-----AAAATCTTGAACT----AAA-----TTTTCTGTTTTTTGATGCAGTT---GT--AAATCTA------------A----T---CACTGCCTCAA--CTGCAAAGG---AACAG----C---------------------------------AAGAGATAATGACAC--------CTGCATGGGTCTCATAAAAACA---------------------------------A---------ATCCA-A---TAGGAAAAAGTGCCACGCCGTCATTGATTTTGTTGCAGTGC-------TGATATG--------------T----GTAT--T----TG--TA------TGC-----------GTGTG-----------------------------TGAGAGTTGAAT--CGAGTTAT--CGCTGCTTCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................AAGG---AACAG----C---------------------------------AAGAGATAATGACAC--------..............................................................................................................................................................................................................................................................2511.001000001
....GGCCAGCAAATATGTGACAATGCGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
............AATATGTGACAATGCGTGGCAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.....GCCAGCAAATATGTGACAATGCGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
........................TGCGTGGCAATGTACCCAAATCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................C-----------GTGTG-----------------------------TGAGAGTTGAAT--CGA.................2111.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAT--CGAGTTAT--CGC.......1811.001000010
...................................................................................................................................................................AAAGG---AACAG----C---------------------------------AAGAGATAATGA.........................................................................................................................................................................................................................................................................2311.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................TA------TGC-----------GTGTG-----------------------------TGAGAGTTG.........................1911.001010000
...................................GTACCCAAATCCTCGGTAGGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
........AGCAAATATGTGACAATGCGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAT--CGAGTTAT--CGCTGCTT..2011.001100000
droGri2
AAAAGGCTAGCAAATATGTGACGATGCGTGGCAATGTACCCAAATCCTCGGTAGGTGCAA-AAAAAAAC--T---------GAAATT--TTGGCAAATTT-------GTTT---GT--GTGTATA------------A----TC----------AG------------------------CAAGTGCA-----------GAA------------TGCAGATAACGTCAT--------TTGCACGCGTCAACAAGAATCA---------------------------------A---------AACCA-ATAACAGCGAAAAGTGCCACGCCGTCATTGGTTTTGCTGTTGTTGTTGTTGCCTGTGTG--------------T----GCATGTT----TG--CA------A-------------GTGTG---------------------------TGTGAG--TTGACATTAATGTTAT--CGCTGCTTCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............AATATGTGACGATGCGTGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00211
.............ATATGTGACGATGCGTGGCAATGTACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00202
...........AAATATGTGACGATGCGTGGCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101
..AAGGCTAGCAAATATGTGACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
................TGTGACGATGCGTGGCAATGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101
...............ATGTGACGATGCGTGGCAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
..............TATGTGACGATGCGTGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101
.................GTGACGATGCGTGGCAATGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
........AGCAAATATGTGACGATGCGTGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110
............AATATGTGACGATGCGTGGCAATGTAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101
.................................ATGTACCCAAATCCTCGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50110

Generated: 05/18/2015 at 07:11 PM