ID:

dsi_20943

 Coordinate:

2r:4793645-4793794 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-30.5 -30.2 -30.2

Flybase annnotation

CDS [2r_4793552_4793644_+]; exon [2r_4793234_4793644_+]; intron [2r_4793645_4794803_+]

No Repeatable elements found

mature
  1. dsi_20943  2r:4793660-4793677 +
  2. 3r:5757561-5757578 -
star

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCCAGCCCAACAGAGTGGAACTGCTTTCGGCGCAGACGGATCCCAGCCAGGTGAGACTCTTTTCCAGGTGAGAGAGAGAGAGAGCGGTAAGATCACCGAATTTTCCTTCTACCTACCACCGCTGTTTTGTGGTTCTTGTTGTTGTTGTTGTTCTGCGGACCGTATCTCTGCACATGCACATTTTCTTTGTTTCCTTCTTTCGATCCCGTTGTTTTTCGCTCTCTGTCCGGATGCTGTTTCCCACTCTTTT
**************************************************..(((((........((((.(((.((.(((((..((((......))))..))))))))))))))...(((((......)))))............(((.((..((((((.......))))))...)))))........))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
.........ACAGAGTGGAACTGCTTTCGGCGC......................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................TCCCAGCCAGGTGAGACTCTTTTCC......................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
........................TTTCGGCGCAGACGGATCCCAGCCAGT....................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.............................GCGCAGACGGATCCCAGCCAGGGAC.................................................................................................................................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......CCAACAGAGTGGAACTGCTTTCGGCGCA........................................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...AGCCCAACAGAGTGGA....................................................................................................................................................................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................AGGTGAGAGAGAGAGAGA....................................................................................................................................................................... 18 0 2 1.00 2 0 0 0 0 2 0 0 0 0 0 0
........AACAGAGTGGAACTGCTTTCGGCGCA........................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..CAGCCCAACAGAGTGGAACTG................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GCTCTCTGTCCGGAT.................. 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........AGAGTGGAACTGCTTTCGGCGCAGA...................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................TATTCGAGGTGAGAAAGAGAGA......................................................................................................................................................................... 22 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
.......................CTTTCGGCGCAGAAGGGT................................................................................................................................................................................................................. 18 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................ACGGATCGTATCTCTGCA.............................................................................. 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGTTGTTGTTGTTTTTCAGAGGA........................................................................................... 23 3 10 0.20 2 0 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GCTCTCTGTCGGGGTG................. 16 2 20 0.20 4 0 0 4 0 0 0 0 0 0 0 0
.....................CGCTTTCGGCGCAGAAGG................................................................................................................................................................................................................... 18 2 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TCATTGGTTCGATCCCGTT........................................ 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................TTGTACCGACCACCGCTCTTT........................................................................................................................... 21 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 1
.......................................................ACTCTTTTCAAGATGAG.................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

GGGTCGGGTTGTCTCACCTTGACGAAAGCCGCGTCTGCCTAGGGTCGGTCCACTCTGAGAAAAGGTCCACTCTCTCTCTCTCTCGCCATTCTAGTGGCTTAAAAGGAAGATGGATGGTGGCGACAAAACACCAAGAACAACAACAACAACAAGACGCCTGGCATAGAGACGTGTACGTGTAAAAGAAACAAAGGAAGAAAGCTAGGGCAACAAAAAGCGAGAGACAGGCCTACGACAAAGGGTGAGAAAA
**************************************************..(((((........((((.(((.((.(((((..((((......))))..))))))))))))))...(((((......)))))............(((.((..((((((.......))))))...)))))........))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 M024
male body		 M053
female body
 SRR553488
RT_0-2 hours eggs
....................................................CTCTGAGAAAAGTTCCAC.................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AAAAAGCGAGCGACAGGC..................... 18 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................CTAGTGGATTGAAAGCAAG............................................................................................................................................. 19 3 15 0.27 4 0 0 0 0 2 0 0 1 1 0
.........................................................................................TCTTGTGGCTTGAAAGGA............................................................................................................................................... 18 2 6 0.17 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ACCGAGAGACAGGCC.................... 15 1 8 0.13 1 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................GCCTGACATAGAGAC................................................................................ 15 1 8 0.13 1 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................AAAAAGCAAGAGACAG....................... 16 1 10 0.10 1 0 0 0 1 0 0 0 0 0 0
..............................................................................TCTCTCGCCTTTCTAGCG.......................................................................................................................................................... 18 2 13 0.08 1 1 0 0 0 0 0 0 0 0 0
..................TTGATGAAAGCCGCGAC....................................................................................................................................................................................................................... 17 2 16 0.06 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TAAAAGAAACACAGGA....................................................... 16 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0
GGGTCGGGTAGTCGCAC......................................................................................................................................................................................................................................... 17 2 19 0.05 1 0 0 0 0 0 0 0 0 0 1
...................................................................................TGCCATTCTAGTAGCT....................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................AACAAAGGGAGGAAGCT............................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................GTACGTGTAAAGGAATC............................................................. 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0

Generated: 04/23/2015 at 04:52 AM