ID:

dsi_20932

 Coordinate:

3r:10223995-10224144 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-17.5 -17.3 -17.3

Flybase annnotation

exon [3r_10224145_10224286_+]; five_prime_UTR [3r_10224145_10224195_+]; intron [3r_10223157_10224144_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTTTCAACGCGAAAGCAAAAAATTCAACTGAGAAAACATCCCATCAATCGAGAGACAAGCGATTCGAATTCGTGCGTGCTGCCTGGCATTTCCCGGGAAATAGATTAAATCAAAAACTAAAAAAAAAAAAATAAGCGGAAAGGAAATTTGAAACACATTGGAAAATTGCTAAGCCATCTCTCTTCCCAACTTTATTGCAGCGAACGAGTTCAACGATTTTTTCGTGAACAGAACAAAACAAATCGATCAA
**************************************************(((((..((((((((((((((.....((((.(((((......))))).....(((...)))......................)))).....)).)))))).............))))))......)))))...................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M053
female body
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 M024
male body		 GSM343915
embryo
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
.........................................................................................................................................................................................................................TTTTTCGTGAACAGAACAAAAC........... 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GAACAGAACAAAACAAATC...... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CTTGAACAGAACAAAACAAATC...... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TTTTCGTGAACAGAACAAAACA.......... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CGTGAACAGAACAAAACAAATC...... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CCGATTTTTTCGTGTACTG................... 19 3 20 1.00 20 1 7 0 0 9 0 3 0 0 0 0
...........................................................................................................................................................................................................................TTTCGTGAACAGAACAAAACAAATC...... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.......................................CCCATCAATCGAGAGACAAGC.............................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................CATCTCTCTTCCCAACTTTA........................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGATTTTTTCGTGTACTG................... 18 2 5 1.00 5 0 2 0 0 0 0 3 0 0 0 0
........................................................................................TGTCCCGGGAAATAG................................................................................................................................................... 15 1 6 1.00 6 0 0 6 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GAACGAGTTCAACGATTTTTCG........................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CGTGAACAGAACAAAACAAATCGATC.. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GAACAGAACAAAACAAATCGATC.. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATTTTTTCGTGAACAGAACA............... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................CCATCAATCGAGAGACAAGCGATTC......................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TTTTTTCGTGAACAGAACAAAACA.......... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AACGATTTTTTCGTGAACAGAACAAAAC........... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GATTTTTTCGTGAACAGAACA............... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTTCGTGAACAGAACAAAAAC.......... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................GAACAGAACAAAACAAATCGATCA. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATTTTTTCGTGAACAGAACAAAACG.......... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................TGGAATTTCCCGGGAA....................................................................................................................................................... 16 1 5 0.40 2 0 0 0 0 0 0 0 0 2 0 0
..............................................................................................................CAAGAACTAAAAAAAAAAAAGTAAC................................................................................................................... 25 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................ACTCAAAAACTAAAAAAAAA........................................................................................................................... 20 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGATTTTTTCGTGTACTGGA................. 20 3 12 0.33 4 0 0 0 0 3 0 0 0 0 1 0
.....................................................................................................................................................................................................................CGATTTTTTCGTGTAC..................... 16 1 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................TCAAAGTCTAAAAAAAAAAAAA....................................................................................................................... 22 2 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................CGATTTTTTCGTGTACTGG.................. 19 3 20 0.15 3 0 1 0 0 2 0 0 0 0 0 0
........................................................................................................TTAACTGAAAAACTGAAAAAAAAAA......................................................................................................................... 25 3 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................TAGCTCAAAAACTAAAAAAAA............................................................................................................................ 21 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................AGATCAGATCAAAAACAAAAAAAA............................................................................................................................. 24 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................AATAAGCGGAAAAGA.......................................................................................................... 15 1 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0
...........................................................................................................ACTCAAAAACTAAAAAAAAAAAAAA...................................................................................................................... 25 2 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................TTAAGCGGAATGGAAATTT..................................................................................................... 19 2 12 0.08 1 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................TAACGCAGAAACTAAAAAAAAAAA......................................................................................................................... 24 3 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................CACTCAAAAACTAAAAAAAAAA.......................................................................................................................... 22 2 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................AATAAGCGGAAAAGAAAC....................................................................................................... 18 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................AAGCTGAAAAGAACTTTGAAA................................................................................................. 21 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

GAAAGTTGCGCTTTCGTTTTTTAAGTTGACTCTTTTGTAGGGTAGTTAGCTCTCTGTTCGCTAAGCTTAAGCACGCACGACGGACCGTAAAGGGCCCTTTATCTAATTTAGTTTTTGATTTTTTTTTTTTTATTCGCCTTTCCTTTAAACTTTGTGTAACCTTTTAACGATTCGGTAGAGAGAAGGGTTGAAATAACGTCGCTTGCTCAAGTTGCTAAAAAAGCACTTGTCTTGTTTTGTTTAGCTAGTT
**************************************************(((((..((((((((((((((.....((((.(((((......))))).....(((...)))......................)))).....)).)))))).............))))))......)))))...................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 M024
male body
........................................................................................................................................................................................................................AAAAAAGCGATTGTCTTGTT.............. 20 2 1 2.00 2 2 0 0 0 0
......................................................................................................CTAATTTAGTTTTTGATTATGGT............................................................................................................................. 23 3 2 0.50 1 0 0 1 0 0
..................................................................................................TCATCTAATTTAGGTTTTGA.................................................................................................................................... 20 2 2 0.50 1 0 1 0 0 0
........................................................................................................................................................................................................................AAAAAAGCGATTGTCTTGTTC............. 21 3 5 0.40 2 2 0 0 0 0
.....................................................................................................TCTAATTTAGGTTTTGA.................................................................................................................................... 17 1 4 0.25 1 0 1 0 0 0
.............................................................................CTACGGACCGTCAAGGG............................................................................................................................................................ 17 2 11 0.09 1 0 0 0 1 0
...........................................AGTTAGCTCTCTGTGCAAT............................................................................................................................................................................................ 19 3 12 0.08 1 0 1 0 0 0
..............................................................................................................................................................................................................TCAAGTTGCTCAAAAAGG.......................... 18 2 15 0.07 1 0 0 0 0 1
...................CTTGAGTTGACTCTTTTG..................................................................................................................................................................................................................... 18 2 16 0.06 1 0 0 0 1 0

Generated: 04/24/2015 at 10:38 AM