ID:

dsi_20917

 Coordinate:

x:2370209-2370502 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-56.1 -56.1 -56.0

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AGCAACTGGCGCTATAGGCGCGACTAACGCCGGCGGCGCCAATGTAACAGGTGAGTAAGCGGTTGGCCATGCAGCTCCTCCCGCCTCACGCCTCCTGCTCCCTTTCAACTCCTCTCCTCTCGTTCCCAGTCATAGCATCAGTATTGTATCGTATCGTATCGTTCCTTCAGTTTCTAACTTGTGTGCCATGTGACGGGCACTAATTTTCCAAATCAAGCCTCGATTTGCAGTACAGTTTCCATATTTGCAATAAAAAGCAGCATTTAATCACGATACGATACTTTGATCTTGGCAATCCGCTTGCCACACACAACCCCATACTTCATCCATTGCCCGATCCTTAGCTGGTGACCATCTCATGCTGAAGCAACATCGCAAGTTGCCGTTGTCGGGG
**************************************************(((.((((((((...((((.((((....................))))...................................((.(((((....((((((((((((...........((((...))))...(((((........)))))........((((((.......)))))).................((((........)))).........)))))))))))).)))))))))))...))))))))))).....................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 M025
embryo
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
..............................................................................................................................................................................................................................................................................................................................................CGATCCGTAGCTGGT............................................. 15 1 4 2.00 8 5 1 0 0 0 1 0 1 0 0
..............................................................................................................................................................................................................................................................................................................................................CGATCCTTAGCTGGT............................................. 15 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................ATACGATACTTTGATCTTGGC..................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................TGCAGTAGAGCTTTCATATTTGC.................................................................................................................................................. 23 3 2 1.00 2 1 0 0 0 0 1 0 0 0 0
.....................GACTAACGCTGGCGGC..................................................................................................................................................................................................................................................................................................................................................................... 16 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TGCAGTAGAGCTTTCATATTTGCA................................................................................................................................................. 24 3 2 1.00 2 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................TGCCCGATCCTTAGCTGGT............................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................GACTAACGCCGGCGGCGCCCAT............................................................................................................................................................................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................GAAGCAAGATCGCAAG............... 16 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................AGGTGAGTAAGCGGTTGGCCATGCAGC............................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................CATCAGTATTCAATCGT.................................................................................................................................................................................................................................................. 17 2 14 0.50 7 5 2 0 0 0 0 0 0 0 0
......................................................................................................................................GCATCAGTATTCAATCGT.................................................................................................................................................................................................................................................. 18 2 4 0.50 2 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TGCAGTAGAGCTTTCATATTT.................................................................................................................................................... 21 3 5 0.40 2 2 0 0 0 0 0 0 0 0 0
.......................................................................................................TTCAAGTCCTCTCCTC................................................................................................................................................................................................................................................................................... 16 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................ACGATCCTTAGCTGGT............................................. 16 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................ATACGGTACTTTGATTTGGGC..................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0
.....................GACGAACGCTGGCGGCGC................................................................................................................................................................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................GGCATCAGTATTCTATCGTT................................................................................................................................................................................................................................................. 20 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................ATCCTTTGCCCGATGCTT.................................................... 18 2 6 0.17 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................CGATCCATAGCTGGT............................................. 15 1 13 0.15 2 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................TTGTATCGTATCGTG............................................................................................................................................................................................................................................ 15 1 8 0.13 1 0 0 0 0 0 0 0 1 0 0
......................................................................................................GTTCAAGTCCTCTCCTC................................................................................................................................................................................................................................................................................... 17 2 20 0.10 2 0 2 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................ACGATCCTTAGCTGG.............................................. 15 1 10 0.10 1 0 1 0 0 0 0 0 0 0 0
...........................................GTAACACGTGAGTAAC............................................................................................................................................................................................................................................................................................................................................... 16 2 14 0.07 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................GACGATCCTTAGCTGGT............................................. 17 2 14 0.07 1 0 1 0 0 0 0 0 0 0 0
............................................GAACAGGTGAGTAAG............................................................................................................................................................................................................................................................................................................................................... 15 1 16 0.06 1 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................GGCATCAGTATTCAATCGT.................................................................................................................................................................................................................................................. 19 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................AATAACGATGCGATACT................................................................................................................ 17 2 19 0.05 1 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................................................................................................CAAAACGTCATACTTCATC................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TCGTTGACCGCGATATCCGCGCTGATTGCGGCCGCCGCGGTTACATTGTCCACTCATTCGCCAACCGGTACGTCGAGGAGGGCGGAGTGCGGAGGACGAGGGAAAGTTGAGGAGAGGAGAGCAAGGGTCAGTATCGTAGTCATAACATAGCATAGCATAGCAAGGAAGTCAAAGATTGAACACACGGTACACTGCCCGTGATTAAAAGGTTTAGTTCGGAGCTAAACGTCATGTCAAAGGTATAAACGTTATTTTTCGTCGTAAATTAGTGCTATGCTATGAAACTAGAACCGTTAGGCGAACGGTGTGTGTTGGGGTATGAAGTAGGTAACGGGCTAGGAATCGACCACTGGTAGAGTACGACTTCGTTGTAGCGTTCAACGGCAACAGCCCC
**************************************************(((.((((((((...((((.((((....................))))...................................((.(((((....((((((((((((...........((((...))))...(((((........)))))........((((((.......)))))).................((((........)))).........)))))))))))).)))))))))))...))))))))))).....................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR1275487
Male larvae
.............................................................CAGCCGGTAGGTCGTGGAGGGC....................................................................................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................CTAGGAAATCAAAGCTTGAAC..................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0
...........................................................................AGGAGGGGGAAGGGCGGAGGACG........................................................................................................................................................................................................................................................................................................ 23 3 2 0.50 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................AAAAGGGTTAGTTCGG............................................................................................................................................................................... 16 1 16 0.50 8 3 0 0 0 1 0 4 0 0
..........................................................................................................................................................GCATAGCAAAGCAGTCAAAG............................................................................................................................................................................................................................ 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0
...........................................................................................................TGAGGCCAGGAGAGCA............................................................................................................................................................................................................................................................................... 16 2 20 0.35 7 1 0 4 0 1 1 0 0 0
..................................................................................................................................................................................................................................................................................................................................................GGAATCGCCCACTGG......................................... 15 1 5 0.20 1 0 0 0 0 0 1 0 0 0
.......................................................................................................AAGTGGATGAGAGGATAGCA............................................................................................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................AAGGAGGTCAAACATTGA....................................................................................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 1 0 0 0
.........................................................................................CGGATGACGAGGGAA.................................................................................................................................................................................................................................................................................................. 15 1 7 0.14 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................ATGATATGAAACTAGAA........................................................................................................ 17 1 9 0.11 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................GGTAGGTAACAGGCTGGGAA.................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................GTGATTTATAGGGTTAGTTCG................................................................................................................................................................................ 21 3 10 0.10 1 1 0 0 0 0 0 0 0 0
..................................................................GGTACCTCGATGAGGGCG...................................................................................................................................................................................................................................................................................................................... 18 2 11 0.09 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................AGGAAATCAAAGCTTGAA...................................................................................................................................................................................................................... 18 2 12 0.08 1 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................................................................................TGAAACTAGAATCGTT................................................................................................... 16 1 12 0.08 1 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................AAAGGGTTAGTTCGGGCCTAA......................................................................................................................................................................... 21 3 13 0.08 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................GTAGCGGGCTAGGGATC.................................................. 17 2 13 0.08 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................AAGGTTTAGTTCGTAG............................................................................................................................................................................. 16 1 14 0.07 1 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................GTAATGGGCTGGGAAT................................................... 16 2 15 0.07 1 0 0 0 0 0 0 0 0 1
........................................................................................................AGTTGAGGCCAGGATAGCA............................................................................................................................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................GTAGGTAACAGACTAGGCA.................................................... 19 3 15 0.07 1 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................TGAAACTAGAATCGT.................................................................................................... 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................ACGTGCTGTCAAAGGAATA...................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:2370159-2370552 + dsi_20917 AGCAA-CTGGCGCTATAGGCGCGACTAACGCCGGCGGCGCCAATGTAACAGGTGAGTAA-GCGGTTGGCCATGCAGCTCC-T-CCCGCCTCA----CGCCT--------------------------CCTGCTCCCTTTC--------------------AACT-------------C--------------------------------------------------CTCTCCTCTCGTT----------------------------CCCAGTC----------------------------------------------------------ATA---GCATCAG--------------TATTGTATCGTAT--------CGTATCGTTCCTTCAG-----TTT-----------CTAACTTGTGTGCCATGTGACG----------GGCACTAATTTTCCA------AATCAAGCC-----------T---CGATTTGCAGTACAG--TTTCC-----------------------ATATTTGCAATAAAA-AGCAGCAT--TTAAT-CACGATACG-ATACTTTGATC---TTGGCAATCCGCTTGCCACA-CACAACCC---CATACTT----------CATCCATTG-----------------------------------------------------------------------------------------------------------CCCGATCCTTAGCTGGTGACCATCTCATGCTGAAGCAACATCGCAAGTTGCCGTTGTCGGGG
droSec2 scaffold_307:10515-10905 + AGCAG-CTGGCGCTATAGGCGCGACCAACGCCGGCGGCGCCAATGTAACAGGTGAGTAA-GCGGTTGGCCATGCAGCTCC-T-CCCG-----------CCT--------------------------ACTGCTCCCTTTC--------------------AACT-------------C--------------------------------------------------CTCTCCTCTCGTT----------------------------CCCAGTC----------------------------------------------------------ATA---GCATCAG--------------TATTGTATCGTAT--------CGTATCGTACCTTCAG-----TTT-----------CTAACTTGTGTGCCATGTGACA----------GGCACTAATTTTCCA------AATCAAGCCG-------ATTT---CGATTTGCAGTACAG--TTTCC-----------------------ATATTTGCAATAAAA-AGCAGCAT--TTAAT-CACGATACG-ATACTTTGATC---TTGGCAATCCGCTTGCCACA-CACAGCCC---CATACTT----------CATCCATTG-----------------------------------------------------------------------------------------------------------CCCGATCCTTAGCTGGTGACCATCTCATGCTGAAGCAACATCGCAAGTTGCCGTTGTCGGGG
dm3 chrX:2567602-2567988 + AGCAA-CTGGCGCTATAGGCGCGACTAATGCCGGCGGCGCCAATGTAACAGGTGAGTAA-GCGGTTGGCCATGCAGCTCCATCCCCGCCTTC----CGTCG--------------------------CCTGCTCCTTTTC--------------------ACCT-------------C--------------------------------------------------CTCTCCTCTTTTT----------------------------CCCAGTC----------------------------------------------------------ATTGTATCATCAG--------------TATTGTATCGTAT--------CGTATCGTATCTTCAG-----TTT-----------CTAACTTGTGTGCCATGTGACAAGAGG-----GGCACTAGTTTTCCA------AATCTAGCC---------------------------------TTCC-----------------------ATATTTGCAATAAAA-AGTAGCAT--TTAAT-CACGATACG-ATACTTTGATC---TTGGCAATTCGCTTGCCACA-CACAATCC---CATACTT----------TATCCATTG-----------------------------------------------------------------------------------------------------------CCCGATCCTTAGCTGGTGTCCATCTCATGATGCGGCAACATCGCAAGTTGCCGTTGTCGGGG
droEre2 scaffold_4644:2512844-2513247 + AGCAG-CTGGCGCTATAGGCGCGACTAACGCCGGCGGCGCCAATGTAACAGGTGAGTAA-GCGGTTGGCCAAGCAGCTTC-T-CCCGCCTCT----CGCCT--------------------------CCTGCTCCTTTTC--------------------ACCTCCAATCAATCCCCCAATCC--------------------------------------------CCAC-----TTCCT----------C------CACC-------GCTACTC----------------------------------------------------------ATA---GCATCAG--------------TATCGTATCGTAACTTA---TTGTATTGTATCTTCAG-----TTC-----------CTAACACGTGTGCCATATGACA----------GCTTCCGCTTTTTCG------AATCAA------------AAT---CGATTTGAAAAGCAG--TTGCC-----------------------ATATTT-----------------T--ACAAT-TACGATACG-ATACTGTGATC---TTGGCAACCTGCTTGCTGTA-CACAATCCCTTCATACTA----------CATTCATCG-----------------------------------------------------------------------------------------------------------CCCGATCCTTAGATCTTGTCCACCTCCTGCTGAGCCCGCATTGCAAGTTGCCGTTGTTAGGG
droYak3 X:5785113-5785479 - AGCAG-CTGGCGCTATAGGCGCGACTAATGCCGGCGGCGCCAATGTAACAGGTGAGTAA-GCGGTGGGCCATGCAGCTTC-T-CCCGC-----------CT--------------------------CCTGCTCCTTGTC--------------------ACCT-------------CCCACT-CATCC-ACCTCCT-TTCATCAATC---CCACA-------------------------------------------------------TCGTC----------------------------------------------------------ATA---GCATCAG--------------TATCGTATCGTAT--------------------TCAG-----CTT-----------C------------------------------------CTATTTTCCG------AACCAAGGC----------------CATTTAAAATCCAG--TTTCC-----------------------GTATTTGCAATGAGTTTGCAGCACTCTTAAC-TACAATACG-ATACTTTGATC---TTGGCCATCTGCCTGCTGTA-CACAATCC---CATACTA----------CATCCCTCG-----------------------------------------------------------------------------------------------------------CCCGATCCCTAGCTGGTGTCCATCTCATGCTGAGGCCGCAACGCAAACGGCCGTTGTCAGGG
droEug1 scf7180000408994:9345-9703 - AGCAG-CTGGCGCCATGGCCGCGACCAATGCCGGCGGCGCCAATGTAACAGGTGAGTAA-GCGGTTGGCCAGCCAGCGCA-T-CCTGCCCCTAGCCCGCCT--------------------------TCAGCTCCTTTTC--------------------C-------------------TCC--------------------------------------------TCATTCCC---------------TC------CGCT----TAT-------TTATC------------ATC---CAATTAATCACAACCATCAATCAACAGCCATATAGCAA---AAAGC-------TGGCCAA--TATCGTATCGTAATGA--------ACTTCG-------TTTTAAGA-----------C---------------------------------------------------------------------------------------------------------------------------------------------------CGAAT-TACGATAGG----------GA---TTGGTGATCTGCTTGCTATA-TGGACTCC---CAGAGCA----------CATCCATCATCCTT-------------------------------------------------------------------CATCCA---------TC--ATCCT---AA---------CCCCCTTAGCTGGTGTCAATCTCGTGCTGAGGCCGCACCGCAGGTTGCGGCTGTTGGGG
droBia1 scf7180000302069:202391-202822 + AGCAG-CTGGCGGTATGGCCGCGAGCAA---------CGCCAACTTAACAGGTGAGTAA-GCGGTTGGCCAGCCAGCGCT-T-TCTGCCCTT------CCC--------------------------CTTGCTCCTTTTC--------------------CTTT-------------TCCGAC-GCTTTGACATCT---------T-----------CAACAGTCA-CCAC-----TTCAT----------------------------GCCAGCC----------------------------------------------------A---AAAAA---GTATCAG--------------TATCGTTTTTTAATACAAATTTGTATCACCCTTGCTG-----TTGATCAGGGTTGACTACCTTGTA---------------TATTTAAGCTCGCTCTTCT-TTGCTTTGGGCTAA------------AGT---CGAC----AAAGAAGTATTTCCATATCTATGAATCCCAGTTCTACGCATTTGC----------CAGCAC--ATAAT-TATG-------------GCTA---CCGGCCATATCTTTGCTGTA-TACAATCC---CACAATA----------CTTCCATCACCTTTTA------------------------------------------------------------------------------------------------------TGCCCCTTAGCTGGTATCAATTTCACGGCGAGACCGCACCGCAAGTTGCCGTTGTCAGGG
droTak1 scf7180000415704:904442-904807 + AGCAG-CTGGCGCTATGGCCGCGACCAATGCCGGCGGCGCCAATGTGACAGGTGAGTAA-GCGGTGGGCCAGCCTC--------CTGACCTC-------------------------------------------------------------------------------------------------------CT-TACATCATACATTACC---CATCGGCCA-CCAC-----GTCAT-TACTTCAC-CCCAGACCA---------CCCAGCC----------------------------------------------------ACATAGATA---GTATCGG--------------TATCGTATTGTAATGTAAAATAGCAT------TGCTG-----ATGATCAGTGTT---------------------------------------------------------------------------------------------------TC-----------------------TTTTCCCTATTAAAT-TGTA-AAC--TTGAT-TACGATTCG-ATATGTTGCTA---TTGGCCACCTCTTGGCTGCAATACAATCCTCCCAGACTA----------CTTCCCTCACCTCTTA------------------------------------------------------------------------------------------C--G---------CCCCCTCAGCTGGTGTGAATCTCATGCTGAGACCGCACCGAAAGGTGCCGATGCCGGGG
droEle1 scf7180000491001:826669-826895 + AGCAT-CTGGTGCAATGGCCGCGACTAACGCCGGCGGCGCCAATGTCACAGGTGAGTAA-GCGGTTGGCCAGCCAGCGAT-G-CT------------------------------CC--TTTT----------------TCTCCCGACATCCCTCG-----------------------CCCC------CACA----------------------------------------------------------------------------TCCAATT----------------------------------------------------------ATA---CCACTAGTATTCAGGCCAACAAATCGT------------------AGTTTA-------TTCGAAAA-----------CCAA--AGTATTCCATGTAAGG----------GGTTCTTAATGT-----------------C-----------A---CAATTTTGAATGGAG--TTTTC-----------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTGAAA
droRho1 scf7180000779976:653916-654084 + AGCAG-CTGGCGCAATGGCCGCGACCAGTGCCGGCGGCGCCAACGTGACAGGTGAGTAA-GCGGCTGGCCAGC-GGCTT----CCTGTCCCC----TGTCC--------------------------ACTGCTCCCCTTC--------------------C-------------------TCCTTCCT-CACATCTAGTCCA-------------------------------------------------C------CACCCTTG---CCCAGAA----------------------------------------------------------ATT---GTATCAG--------------TATCGTATCGTAATAT--------AT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454072:2495885-2496297 + AGCAG-GCGGCGCCATGGCCGCGACCAACGCCGGCGGCGCCAACGTAACAGGTGAGTAG-GCGGTTGGCCAGCCAGCGGTTT-CCCGCTCCC----CTTCC--------------------------ATTGCCCTCCTCC--------------------T-------------------GCT-CTCGC-ACCTCCG-ACCACCGATC---TCCGAT---------C------------------------------------------TCCAGCA----------------------------------------------------------GTG---CCATCGG--------------AATCGTATTGCAATTA----GTGAA------------TT--------------------------------------------------------------CG------AACGAA------------ACTCCTCTACTTTAGAAGGAG--T-GGC-----------------------ATCTTTGCTACTGAA-AGCTGC-----TAAT-TTCAATAGG-ATGTTTCGATGCTGCTGGCACTCTGATCGCCCCA-GACAACCT---CAGATAACTTCACTTCACTACCATCGCCTCATCCGCATCCTCATCCGCAATCA--------------------------------------------------------------------C---ATCCCCATCCGAATCCTCAGCTGGCGTCAATCTCATGCTGAGGCCACCGCGCAAGCTGCCGCTGCCAGGG
droKik1 scf7180000302344:719499-719616 - AGCAG-CTGGCTCAATGGCCACGACCAATGCCGGTGGCGCCAATGTAACAGGTGAGTAG-GCGGTTGGCCAGCCAGCGGT-T-TCCTCT--------------------------CC--TTCG----CCTCT------------CCATATGCACCTCCGCATCCCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12929:2574081-2574464 + TGCAT-CCGGGGCCATAGCCGCGACCAATGCTGGCGGCGCCAACGTAACAGGTGAGTGA-GCGGTTGGCCGGCCATCATC-A-TC------------------------------AC--TTCCTCCTCCTTCTCCTCTTT---------------------------------------CTCC----------------------------------------------TT-------------------TC------TGCT----TTT-------TCATCGAAAGT----GTATC---GATATATATATCGATATCTATCGACCGTCATATC------------------------------------------------------------------------------------------------------G-----ATG-----GGCGTTACT-GTCCA------ATTGTAGTT---------------------------------------------------------------------TTGAAA-AGTTTC-----TAAAAGCCAATAGACCTGTTTCGATATGACTTCCATGTAGAT-G------------------------CTTTT-------------CTTTTTTCCGCTTTTTCTTCTATTATTAT-TATTGATCCT--------------------------------GCATCCTTGCATCCTTGCATATCCTGCACA---------CATCCTTAGTTGACGTTAATCTCATGCTGAAGCCACCGCGCAAATTGCCGCAGCCGGGG
droBip1 scf7180000396434:564950-565343 + TGCAT-CCGGCGCCATAGCCGCGACCAATGCTGGCGGCGCCAATGTAACAGGTGAGTGA-GCGGTTGGCCGGTCTTCA--------GCCACC----CACCCAATGATCCTTCATCACTCTTCCTCTTCCTGCTCCTATTC--------------------TATT-------------TCTGCT-------------------------------------------T------------------------------------------T------TCATCAAAAATTCGGGTATTCTTG--------ATCGAT--------------------ATA---TATCGAT--------------AGTTATATCG----------------------------------------------------------------------ATATTTAAGTATTTACT-TTCTA------ATTCAGTTTCTCCTATAAAGC---C-----------------T------------------------------------------------------------------------------------TCCAAGTAGTT-G------------------------CTTTT-------------CTTT-TCCTGCT---TCTTCTATTATTTTGTATCCATCCTTCCTGGATGTCATCCCTCCACCTAATCGTCCTTCATCCT---------GC--ATCCTGC--A---------CATCCATAGTTGACGTTAGTCTCATGCTGAAGCCACCGCGCAAATTGCCGCAGCCGGGG
dp5 XL_group1a:6261321-6261446 - TGCAG-CCGGCTCCATAGCTGCGACCAATGCTGGTGGCGCCAACGTGACAGGTGAGTGA-GCG-TTGGCCATCCCTCGC----CCTGTCCCC------CCC--------------------------ACTGTATTCCTAC--------------------C-------------------CCT--------------------------------------------CCACTCCTCCCACC----------------------------CCCACTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_25:1065877-1066003 + TGCAACCCGGCTCCATAGATGCGACCAATGCTGGTGGCGCCAACGTGACAGGTGAGTGA-GCG-TTGGCCATCCCTCGC----CCTGTCCCC-------CC--------------------------ACTGTATTCCTTC--------------------C-------------------CCT--------------------------------------------CCACTCTTCCCACCC--------CC------CTCC----T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004909:9034569-9034632 - ---------GCGCTATTGCCACGACCAATGCTGGTGGCGCTACCGTAACAGGTGAGTGAAGCGTTTGCCGAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12970:8503384-8503452 - AGCAG-CCGGCGCAATTGCCACAAGCAATGCTGGTGGCGCCAACATAACAGGTGAGTAA-GCGTGTGCCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6482:747398-747488 + TTCAG-CCGGCGCAATTGCCACAAGCAATGCAGGTGGCGCTAACATAACAGGTGAGTAG-GCGCGTGCCCAGC-TGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGCGTGTCGCGTC------AC
droGri2 scaffold_14853:7983172-7983276 + TGCAG-CCGGCACGATTGCCACTAGCAATGCTGGTGGCGCCAACATAACAGGTGAGTAA-GCGTTCGACCAGTCCGCCAT-C-TTCATCT--------------------------------T----------------CGTCACCATCTCCATCT-----------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGCAA-CTGGCGCTATAGGCGCGACTAACGCCGGCGGCGCCAATGTAACAGGTGAGTAA-GCGGTTGGCCATGCAGCTCC-T-CCCGCCTCA----CGCCT--------------------------CCTGCTCCCTTTC--------------------AACT-------------C--------------------------------------------------CTCTCCTCTCGTT----------------------------CCCAGTC----------------------------------------------------------ATA---GCATCAG--------------TATTGTATCGTAT--------CGTATCGTTCCTTCAG-----TTT-----------CTAACTTGTGTGCCATGTGACG----------GGCACTAATTTTCCA------AATCAAGCC-----------T---CGATTTGCAGTACAG--TTTCC-----------------------ATATTTGCAATAAAA-AGCAGCAT--TTAAT-CACGATACG-ATACTTTGATC---TTGGCAATCCGCTTGCCACA-CACAACCC---CATACTT----------CATCCATTG-----------------------------------------------------------------------------------------------------------CCCGATCCTTAGCTGGTGACCATCTCATGCTGAAGCAACATCGCAAGTTGCCGTTGTCGGGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCCTTAGCTGGT.............................................1512.00200000000020000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACG-ATACTTTGATC---TTGGC..............................................................................................................................................................................................................................2111.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-----------------------------------------------------------------------------------------------------------CCCGATCCTTAGCTGGT.............................................1911.00100000000000100000
.................................................AGGTGAGTAA-GCGGTTGGCCATGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................TTGTATCGTAT--------CGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................1580.13100000001000000000
droSec2
AGCAG-CTGGCGCTATAGGCGCGACCAACGCCGGCGGCGCCAATGTAACAGGTGAGTAA-GCGGTTGGCCATGCAGCTCC-T-CCCG-----------CCT--------------------------ACTGCTCCCTTTC--------------------AACT-------------C--------------------------------------------------CTCTCCTCTCGTT----------------------------CCCAGTC----------------------------------------------------------ATA---GCATCAG--------------TATTGTATCGTAT--------CGTATCGTACCTTCAG-----TTT-----------CTAACTTGTGTGCCATGTGACA----------GGCACTAATTTTCCA------AATCAAGCCG-------ATTT---CGATTTGCAGTACAG--TTTCC-----------------------ATATTTGCAATAAAA-AGCAGCAT--TTAAT-CACGATACG-ATACTTTGATC---TTGGCAATCCGCTTGCCACA-CACAGCCC---CATACTT----------CATCCATTG-----------------------------------------------------------------------------------------------------------CCCGATCCTTAGCTGGTGACCATCTCATGCTGAAGCAACATCGCAAGTTGCCGTTGTCGGGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGTGACCATCTCATGCTGAAGCA.........................2711.0010010
............................CGCCGGCGGCGCCAATGTAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
..............ATAGGCGCGACCAACGCCGGCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
dm3
AGCAA-CTGGCGCTATAGGCGCGACTAATGCCGGCGGCGCCAATGTAACAGGTGAGTAA-GCGGTTGGCCATGCAGCTCCATCCCCGCCTTC----CGTCG--------------------------CCTGCTCCTTTTC--------------------ACCT-------------C--------------------------------------------------CTCTCCTCTTTTT----------------------------CCCAGTC----------------------------------------------------------ATTGTATCATCAG--------------TATTGTATCGTAT--------CGTATCGTATCTTCAG-----TTT-----------CTAACTTGTGTGCCATGTGACAAGAGG-----GGCACTAGTTTTCCA------AATCTAGCC---------------------------------TTCC-----------------------ATATTTGCAATAAAA-AGTAGCAT--TTAAT-CACGATACG-ATACTTTGATC---TTGGCAATTCGCTTGCCACA-CACAATCC---CATACTT----------TATCCATTG-----------------------------------------------------------------------------------------------------------CCCGATCCTTAGCTGGTGTCCATCTCATGATGCGGCAACATCGCAAGTTGCCGTTGTCGGGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................GACTAATGCCGGCGGCGCCAATGTAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006
..........................AATGCCGGCGGCGCCAATGTAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GGCGCTATAGGCGCGACTAATGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GCGGCGCCAATGTAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CCGGCGGCGCCAATGTAACAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------AATCTAGCC---------------------------------TTCC-----------------------ATATTT.....................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................AGGCGCGACTAATGCCGGCGGCGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................CTTTTT----------------------------CCCAGTC----------------------------------------------------------ATTGTATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................AATGCCGGCGGCGCCAATGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TGCCGGCGGCGCCAATGTAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GACTAATGCCGGCGGCGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
................................GGCGGCGCCAATGTAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000
..............ATAGGCGCGACTAATGCCGGCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTCATGATGCGGCAACATCGCAAGT..............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ACTAATGCCGGCGGCGCCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GACTAATGCCGGCGGCGCCAATGTAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGCCATGTGACAAGAGG-----.....................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CGCGACTAATGCCGGCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CGACTAATGCCGGCGGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.............TATAGGCGCGACTAATGCCGGCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTCATGATGCGGCAACA......................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TGCCGGCGGCGCCAATGTAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TGCCGGCGGCGCCAATGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTCATGATGCGGCAACAG.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TATAGGCGCGACTAATGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTAGCC---------------------------------TTCC-----------------------ATATTTGC...................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-AGTAGCAT--TTAAT-CACGAT.....................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GACTAATGCCGGCGGCGCCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGATGCGGCAACATCGCAAGTTGC...........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................AATGCCGGCGGCGCCAATGTAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-CACGATACG-ATACTTTGAAT---C..................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TGGCGCTATAGGCGCGACTAATGCCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AA-CTGGCGCTATAGGCGCGAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................TAA-GCGGTTGGCCATGCAGCTCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................TAATGCCGGCGGCGCCAATGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............TATAGGCGCGACTAATGCCGGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CTAATGCCGGCGGCGCCAATGTAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...................................................................................................................................................................T-------------C--------------------------------------------------CTCTCCTCTTTTT----------------------------CCCAGTC----------------------------------------------------------A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TAATGCCGGCGGCGCCAATGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CTAATGCCGGCGGCGCCAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCATCTCATGATGCGGC..........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTT----------TATCCATTG-----------------------------------------------------------------------------------------------------------CCCGATC.......................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TGCCGGCGGCGCCAATGTAACAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................AATGCCGGCGGCGCCAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTCATGATGCGGCAACATCGCAAG...............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
..................GCGCGACTAATGCCGGCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CGACTAATGCCGGCGGCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TGCCGGCGGCGCCAATGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CCCCGCCTTC----CGTCG--------------------------CCTGCTCCTTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGCAG-CTGGCGCTATAGGCGCGACTAACGCCGGCGGCGCCAATGTAACAGGTGAGTAA-GCGGTTGGCCAAGCAGCTTC-T-CCCGCCTCT----CGCCT--------------------------CCTGCTCCTTTTC--------------------ACCTCCAATCAATCCCCCAATCC--------------------------------------------CCAC-----TTCCT----------C------CACC-------GCTACTC----------------------------------------------------------ATA---GCATCAG--------------TATCGTATCGTAACTTA---TTGTATTGTATCTTCAG-----TTC-----------CTAACACGTGTGCCATATGACA----------GCTTCCGCTTTTTCG------AATCAA------------AAT---CGATTTGAAAAGCAG--TTGCC-----------------------ATATTT-----------------T--ACAAT-TACGATACG-ATACTGTGATC---TTGGCAACCTGCTTGCTGTA-CACAATCCCTTCATACTA----------CATTCATCG-----------------------------------------------------------------------------------------------------------CCCGATCCTTAGATCTTGTCCACCTCCTGCTGAGCCCGCATTGCAAGTTGCCGTTGTTAGGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.GCAG-CTGGCGCTATAGGCGCGACTAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
AGCAG-CTGGCGCTATAGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
droYak3
AGCAG-CTGGCGCTATAGGCGCGACTAATGCCGGCGGCGCCAATGTAACAGGTGAGTAA-GCGGTGGGCCATGCAGCTTC-T-CCCGC-----------CT--------------------------CCTGCTCCTTGTC--------------------ACCT-------------CCCACT-CATCC-ACCTCCT-TTCATCAATC---CCACA-------------------------------------------------------TCGTC----------------------------------------------------------ATA---GCATCAG--------------TATCGTATCGTAT--------------------TCAG-----CTT-----------C------------------------------------CTATTTTCCG------AACCAAGGC----------------CATTTAAAATCCAG--TTTCC-----------------------GTATTTGCAATGAGTTTGCAGCACTCTTAAC-TACAATACG-ATACTTTGATC---TTGGCCATCTGCCTGCTGTA-CACAATCC---CATACTA----------CATCCCTCG-----------------------------------------------------------------------------------------------------------CCCGATCCCTAGCTGGTGTCCATCTCATGCTGAGGCCGCAACGCAAACGGCCGTTGTCAGGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGATC---TTGGCCATCTGCCTGCTGTA-..............................................................................................................................................................................................................2811.00101000000000
......................GACTAATGCCGGCGGCGCCAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
................................GGCGGCGCCAATGTAACAGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
....................................................................................................................................TCCTTGTC--------------------ACCT-------------CCCACT-CATCC-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000
.........................TAATGCCGGCGGCGCCAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
droEug1
AGCAG-CTGGCGCCATGGCCGCGACCAATGCCGGCGGCGCCAATGTAACAGGTGAGTAA-GCGGTTGGCCAGCCAGCGCA-T-CCTGCCCCTAGCCCGCCT--------------------------TCAGCTCCTTTTC--------------------C-------------------TCC--------------------------------------------TCATTCCC---------------TC------CGCT----TAT-------TTATC------------ATC---CAATTAATCACAACCATCAATCAACAGCCATATAGCAA---AAAGC-------TGGCCAA--TATCGTATCGTAATGA--------ACTTCG-------TTTTAAGA-----------C---------------------------------------------------------------------------------------------------------------------------------------------------CGAAT-TACGATAGG----------GA---TTGGTGATCTGCTTGCTATA-TGGACTCC---CAGAGCA----------CATCCATCATCCTT-------------------------------------------------------------------CATCCA---------TC--ATCCT---AA---------CCCCCTTAGCTGGTGTCAATCTCGTGCTGAGGCCGCACCGCAGGTTGCGGCTGTTGGGGSizeHit CountTotal NormTotal
No Reads
droBia1
AGCAG-CTGGCGGTATGGCCGCGAGCAA---------CGCCAACTTAACAGGTGAGTAA-GCGGTTGGCCAGCCAGCGCT-T-TCTGCCCTT------CCC--------------------------CTTGCTCCTTTTC--------------------CTTT-------------TCCGAC-GCTTTGACATCT---------T-----------CAACAGTCA-CCAC-----TTCAT----------------------------GCCAGCC----------------------------------------------------A---AAAAA---GTATCAG--------------TATCGTTTTTTAATACAAATTTGTATCACCCTTGCTG-----TTGATCAGGGTTGACTACCTTGTA---------------TATTTAAGCTCGCTCTTCT-TTGCTTTGGGCTAA------------AGT---CGAC----AAAGAAGTATTTCCATATCTATGAATCCCAGTTCTACGCATTTGC----------CAGCAC--ATAAT-TATG-------------GCTA---CCGGCCATATCTTTGCTGTA-TACAATCC---CACAATA----------CTTCCATCACCTTTTA------------------------------------------------------------------------------------------------------TGCCCCTTAGCTGGTATCAATTTCACGGCGAGACCGCACCGCAAGTTGCCGTTGTCAGGGSizeHit CountTotal NormTotal
No Reads
droTak1
AGCAG-CTGGCGCTATGGCCGCGACCAATGCCGGCGGCGCCAATGTGACAGGTGAGTAA-GCGGTGGGCCAGCCTC--------CTGACCTC-------------------------------------------------------------------------------------------------------CT-TACATCATACATTACC---CATCGGCCA-CCAC-----GTCAT-TACTTCAC-CCCAGACCA---------CCCAGCC----------------------------------------------------ACATAGATA---GTATCGG--------------TATCGTATTGTAATGTAAAATAGCAT------TGCTG-----ATGATCAGTGTT---------------------------------------------------------------------------------------------------TC-----------------------TTTTCCCTATTAAAT-TGTA-AAC--TTGAT-TACGATTCG-ATATGTTGCTA---TTGGCCACCTCTTGGCTGCAATACAATCCTCCCAGACTA----------CTTCCCTCACCTCTTA------------------------------------------------------------------------------------------C--G---------CCCCCTCAGCTGGTGTGAATCTCATGCTGAGACCGCACCGAAAGGTGCCGATGCCGGGGSizeHit CountTotal NormTotal
No Reads
droEle1
AGCAT-CTGGTGCAATGGCCGCGACTAACGCCGGCGGCGCCAATGTCACAGGTGAGTAA-GCGGTTGGCCAGCCAGCGAT-G-CT------------------------------CC--TTTT----------------TCTCCCGACATCCCTCG-----------------------CCCC------CACA----------------------------------------------------------------------------TCCAATT----------------------------------------------------------ATA---CCACTAGTATTCAGGCCAACAAATCGT------------------AGTTTA-------TTCGAAAA-----------CCAA--AGTATTCCATGTAAGG----------GGTTCTTAATGT-----------------C-----------A---CAATTTTGAATGGAG--TTTTC-----------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTGAAASizeHit CountTotal NormTotal
No Reads
droRho1
AGCAG-CTGGCGCAATGGCCGCGACCAGTGCCGGCGGCGCCAACGTGACAGGTGAGTAA-GCGGCTGGCCAGC-GGCTT----CCTGTCCCC----TGTCC--------------------------ACTGCTCCCCTTC--------------------C-------------------TCCTTCCT-CACATCTAGTCCA-------------------------------------------------C------CACCCTTG---CCCAGAA----------------------------------------------------------ATT---GTATCAG--------------TATCGTATCGTAATAT--------AT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AGCAG-GCGGCGCCATGGCCGCGACCAACGCCGGCGGCGCCAACGTAACAGGTGAGTAG-GCGGTTGGCCAGCCAGCGGTTT-CCCGCTCCC----CTTCC--------------------------ATTGCCCTCCTCC--------------------T-------------------GCT-CTCGC-ACCTCCG-ACCACCGATC---TCCGAT---------C------------------------------------------TCCAGCA----------------------------------------------------------GTG---CCATCGG--------------AATCGTATTGCAATTA----GTGAA------------TT--------------------------------------------------------------CG------AACGAA------------ACTCCTCTACTTTAGAAGGAG--T-GGC-----------------------ATCTTTGCTACTGAA-AGCTGC-----TAAT-TTCAATAGG-ATGTTTCGATGCTGCTGGCACTCTGATCGCCCCA-GACAACCT---CAGATAACTTCACTTCACTACCATCGCCTCATCCGCATCCTCATCCGCAATCA--------------------------------------------------------------------C---ATCCCCATCCGAATCCTCAGCTGGCGTCAATCTCATGCTGAGGCCACCGCGCAAGCTGCCGCTGCCAGGGSizeHit CountTotal NormTotal
No Reads
droKik1
AGCAG-CTGGCTCAATGGCCACGACCAATGCCGGTGGCGCCAATGTAACAGGTGAGTAG-GCGGTTGGCCAGCCAGCGGT-T-TCCTCT--------------------------CC--TTCG----CCTCT------------CCATATGCACCTCCGCATCCCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TGCAT-CCGGGGCCATAGCCGCGACCAATGCTGGCGGCGCCAACGTAACAGGTGAGTGA-GCGGTTGGCCGGCCATCATC-A-TC------------------------------AC--TTCCTCCTCCTTCTCCTCTTT---------------------------------------CTCC----------------------------------------------TT-------------------TC------TGCT----TTT-------TCATCGAAAGT----GTATC---GATATATATATCGATATCTATCGACCGTCATATC------------------------------------------------------------------------------------------------------G-----ATG-----GGCGTTACT-GTCCA------ATTGTAGTT---------------------------------------------------------------------TTGAAA-AGTTTC-----TAAAAGCCAATAGACCTGTTTCGATATGACTTCCATGTAGAT-G------------------------CTTTT-------------CTTTTTTCCGCTTTTTCTTCTATTATTAT-TATTGATCCT--------------------------------GCATCCTTGCATCCTTGCATATCCTGCACA---------CATCCTTAGTTGACGTTAATCTCATGCTGAAGCCACCGCGCAAATTGCCGCAGCCGGGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................GCTGGCGGCGCCAACGTAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTTAATCTCATGCTGAAGC..........................2211.001010000
droBip1
TGCAT-CCGGCGCCATAGCCGCGACCAATGCTGGCGGCGCCAATGTAACAGGTGAGTGA-GCGGTTGGCCGGTCTTCA--------GCCACC----CACCCAATGATCCTTCATCACTCTTCCTCTTCCTGCTCCTATTC--------------------TATT-------------TCTGCT-------------------------------------------T------------------------------------------T------TCATCAAAAATTCGGGTATTCTTG--------ATCGAT--------------------ATA---TATCGAT--------------AGTTATATCG----------------------------------------------------------------------ATATTTAAGTATTTACT-TTCTA------ATTCAGTTTCTCCTATAAAGC---C-----------------T------------------------------------------------------------------------------------TCCAAGTAGTT-G------------------------CTTTT-------------CTTT-TCCTGCT---TCTTCTATTATTTTGTATCCATCCTTCCTGGATGTCATCCCTCCACCTAATCGTCCTTCATCCT---------GC--ATCCTGC--A---------CATCCATAGTTGACGTTAGTCTCATGCTGAAGCCACCGCGCAAATTGCCGCAGCCGGGGSizeHit CountTotal NormTotal
No Reads
dp5
TGCAG-CCGGCTCCATAGCTGCGACCAATGCTGGTGGCGCCAACGTGACAGGTGAGTGA-GCG-TTGGCCATCCCTCGC----CCTGTCCCC------CCC--------------------------ACTGTATTCCTAC--------------------C-------------------CCT--------------------------------------------CCACTCCTCCCACC----------------------------CCCACTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................ACCAATGCTGGTGGCGCCAACGTGACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000001000
..................CTGCGACCAATGCTGGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.............CATAGCTGCGACCAATGCTGGTGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
......................GACCAATGCTGGTGGCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.................GCTGCGACCAATGCTGGTGGCGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001000000
droPer2
TGCAACCCGGCTCCATAGATGCGACCAATGCTGGTGGCGCCAACGTGACAGGTGAGTGA-GCG-TTGGCCATCCCTCGC----CCTGTCCCC-------CC--------------------------ACTGTATTCCTTC--------------------C-------------------CCT--------------------------------------------CCACTCTTCCCACCC--------CC------CTCC----T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
---------GCGCTATTGCCACGACCAATGCTGGTGGCGCTACCGTAACAGGTGAGTGAAGCGTTTGCCGAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................ACCAATGCTGGTGGCGCTACCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
........................CCAATGCTGGTGGCGCTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
......................GACCAATGCTGGTGGCGCTACCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
...........................ATGCTGGTGGCGCTACCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.........................CAATGCTGGTGGCGCTACCGTAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
..........................AATGCTGGTGGCGCTACCGTAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
...................CACGACCAATGCTGGTGGCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
droVir3
AGCAG-CCGGCGCAATTGCCACAAGCAATGCTGGTGGCGCCAACATAACAGGTGAGTAA-GCGTGTGCCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
AGCAG-CCGGCGCAATTGCCACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000000000000000000000000000010000000100000000000000000000000000
.GCAG-CCGGCGCAATTGCCACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
.............AATTGCCACAAGCAATGCTGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.................................GTGGCGCCAACATAACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000100000000000000000000000000000000
..........................AATGCTGGTGGCGCCAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000100000000000000000000000000
...................CACAAGCAATGCTGGTGGCGCCAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000001
droMoj3
TTCAG-CCGGCGCAATTGCCACAAGCAATGCAGGTGGCGCTAACATAACAGGTGAGTAG-GCGCGTGCCCAGC-TGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGCGTGTCGCGTC------ACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................AAGCAATGCAGGTGGCGCTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
..............................................AACAGGTGAGTAG-GCGCGTGCCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000
droGri2
TGCAG-CCGGCACGATTGCCACTAGCAATGCTGGTGGCGCCAACATAACAGGTGAGTAA-GCGTTCGACCAGTCCGCCAT-C-TTCATCT--------------------------------T----------------CGTCACCATCTCCATCT-----------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................GCAATGCTGGTGGCGCCAACATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110

Generated: 05/19/2015 at 04:19 PM