ID:

dsi_2089

Coordinate:

3l:7458359-7458508 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-22.1	-22.0	-22.0	-21.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GCCGTCACATCAGCGTAAATCAGAGGATTTCCTCGCCAAATAGTTTTGAGGTAATTTCTGGTTTCACATTTTATTAGCTAAGCGGCCCGAAGTCTGAAGTTCATTATCATTTATAGCCAATAATTGTCGAGTGTTTCTTCGTTGTTCAGTTGTACGGTGTAGTGTAGTGTAGTGTTTGAATCCGACCCTGACCTCAGTATTCATTAAAAATCAATTGTTTTCCACTCGCATTCGCATTCGCATTGGCAAT ************************************************((.......((((..(((((..(((((((..(((((..(((...(((((..((((..((.((((.....)))).))...))))...)))))...))).)))))..))).))))..)))))...................)))).....))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	O002 Head	SRR553486 Makindu_3 day-old ovaries	M024 male body	SRR553487 NRT_0-2 hours eggs	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR553488 RT_0-2 hours eggs
...........................................................................................................................................................GGTGTAGTGTAGTGTAGTG............................................................................	19	0	1	1.00	1	0	1	0	0	0	0	0	0
.................................................................................................................................................................................GAATCCGACCCTGACCTC.......................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0
...................................................................................................................................................................GTAGTGTAGTGGGTGA.......................................................................	16	2	20	0.25	5	0	0	1	0	0	2	1	1
.................................................................AACTTTTATTGGCTAAGCGGC....................................................................................................................................................................	21	3	4	0.25	1	0	0	0	1	0	0	0	0
.....................AGAGGATTTCGTCGCCGAGT.................................................................................................................................................................................................................	20	3	6	0.17	1	0	0	1	0	0	0	0	0
...........AGCGTTGATCCGAGGATTTC...........................................................................................................................................................................................................................	20	3	8	0.13	1	0	0	1	0	0	0	0	0
.............................................................................................................................................................................GTTCGAGTCCGACCCT.............................................................	16	2	20	0.10	2	0	0	1	0	1	0	0	0
........................................................................................................................................................TCCGGTATAGTGTAGTGG................................................................................	18	3	20	0.05	1	0	0	0	0	1	0	0	0
...........................................................................................................................................CGTGGTTCAGTCGTAC...............................................................................................	16	2	20	0.05	1	0	0	0	0	1	0	0	0

Anti-sense strand reads

CGGCAGTGTAGTCGCATTTAGTCTCCTAAAGGAGCGGTTTATCAAAACTCCATTAAAGACCAAAGTGTAAAATAATCGATTCGCCGGGCTTCAGACTTCAAGTAATAGTAAATATCGGTTATTAACAGCTCACAAAGAAGCAACAAGTCAACATGCCACATCACATCACATCACAAACTTAGGCTGGGACTGGAGTCATAAGTAATTTTTAGTTAACAAAAGGTGAGCGTAAGCGTAAGCGTAACCGTTA ************************************************((.......((((..(((((..(((((((..(((((..(((...(((((..((((..((.((((.....)))).))...))))...)))))...))).)))))..))).))))..)))))...................)))).....))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	M024 male body	M053 female body	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
......................CTCCTAAAGGAGCGGTTT..................................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0
.............................................................................................................................AAGCTTACCAAGAAGCAACAAG.......................................................................................................	22	3	2	0.50	1	0	1	0	0	0	0	0	0
..............................................................................................................................................................................GAACTTAGGGTGGGACTG..........................................................	18	2	3	0.33	1	0	0	1	0	0	0	0	0
..........................................................................................................................TCACAGGTCACACAGAAGCAA...........................................................................................................	21	3	3	0.33	1	0	0	0	1	0	0	0	0
...........................................................CCAAAGTGTAAGAGAATCG............................................................................................................................................................................	19	2	4	0.25	1	0	0	0	0	0	1	0	0
.GGGAGTGTAGTCGCA..........................................................................................................................................................................................................................................	15	1	4	0.25	1	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................CAAAAAGTGAGCGTAA..................	16	1	18	0.06	1	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................AAAAGGTGCGGGTCAGCGTA.............	20	3	20	0.05	1	0	0	0	0	0	0	0	1

Generated: 04/24/2015 at 09:48 AM