ID:

dsi_20888

 Coordinate:

2l:18604651-18604912 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.5 -14.3 -14.2

Flybase annnotation

three_prime_UTR [2l_18604548_18605085_+]; exon [2l_18604365_18605085_+]

Repeatable elements

NameClassFamilyStrand
(TA)nSimple_repeatSimple_repeat+

Sense Strand Reads

##########################################################################################################################################################################################################################################################################################################################################################################
CAACATATAAAAAAAAACTTCAAGAAACAGCAACTAAAACTTCAGCATGGGTCTCATCACCACCCGAATAATTTCTATTCTTTCCTTTCGAGCGTTTTGCGTTCCCAAATAGGCCGACGTTTGTAATATTCAACTTGAAGTGAACCGACTTCAAATTGAATATTTTGGCCAACGTCTCACCCACATTCTGATTTTGAGATTTCAAACTCTCTTTTCTTCGTTATTTTTCTCATTGTTGTTTCATATATATATAGCATATATATTTCCATATATATATATATAACCTGATTTGATTTCTTTCCTCAAATGTAGCATTTTACAGCGCCTAACGTCACCTCACCCCAAATCGAAACCACAGCAAC
********************************************************************************************************************************(((((.(((((((......))))))).))))).............((((((...............)))))).....................********************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR618934
dsim w501 ovaries
 O001
Testis
 M053
female body
 SRR902009
testis
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
................................................................................................................................TTCAACTTGAAGTGAACCGACT.................................................................................................................................................................................................................... 22 0 1 4.00 4 0 0 4 0 0 0 0 0 0 0
.............................................................................................................TAGGCCGACGTTTGTAATATTCAACTTGA................................................................................................................................................................................................................................ 29 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................TTTGATTTCTTTCCTCAAATGTAGCATT.............................................. 28 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TGAGATTTCAAACTCTCTTTTCTTCGT............................................................................................................................................. 27 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0
.................................................................................................................................................................................................................................................................................................TTGATTTCTTTCCTCAAATGTAGCATT.............................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................AATATTTTGGCCAACGTC.......................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................GTGAACCGACTTCAAATTGAAT......................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................TCAAATTGAATATTTTGGCCAACGTC.......................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................GTCTCACCCACATTCTGATTTTGA..................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................................................................TATATATATATAACCTGGGTT....................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TTCGTTATTTTTCTCATTGTTGTT.......................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1
...................................................................................................................................................................................................................................TCTCATTGTTGTTTCATATATATA............................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................GAATAATTTCTATTCTTTC...................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................CAACTTGAAGTGAACCGAC..................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................TTTCTCATTGTTGTTTCATATATATA............................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................................................................................................................................CATTTTACAGCGCCTAACGTCACCT......................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................TAACGTCACCTCACCCCAAATCGAAACC........ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGTAATATTCAACTTGAAGTGAACCGAC..................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................TGTAGCATTTTACAGCGCCTAACGTCACC.......................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................ACATTCTGATTTTGAGAT.................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................TATATATATATAACCTGATTTGATTTCTT............................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................GGCCGACGTTTGTAATATTCAACTTGA................................................................................................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................CAACTTGAAGTGAACCGA...................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.................................................................................TTCCTTTCGAGCGTTTTGCGTT................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................TATATATATAACCTGATTTGATTTCTT............................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TTTCAAACTCTCTTTTCTTCGTTATTTT....................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TATTTTTCTCATTGTTGTTTCATATATA................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................CAAATTGAATATTTTGGCCAACGTCTCAC...................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................TTTCCTCAAATGTAGCATTTTACAGC....................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................TCCTCAAATGTAGCATTTTACAGCGC..................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................TTTGCGTTCCCAAATAGGCCGACGTT................................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................AACTAAAACTTCAGCATGGGTCTCATC................................................................................................................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................CACACTCTGATTTTGA..................................................................................................................................................................... 16 1 14 0.07 1 1 0 0 0 0 0 0 0 0 0
......................................................................................TTCGAGCGTCGTGCGTCC.................................................................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

GTTGTATATTTTTTTTTGAAGTTCTTTGTCGTTGATTTTGAAGTCGTACCCAGAGTAGTGGTGGGCTTATTAAAGATAAGAAAGGAAAGCTCGCAAAACGCAAGGGTTTATCCGGCTGCAAACATTATAAGTTGAACTTCACTTGGCTGAAGTTTAACTTATAAAACCGGTTGCAGAGTGGGTGTAAGACTAAAACTCTAAAGTTTGAGAGAAAAGAAGCAATAAAAAGAGTAACAACAAAGTATATATATATCGTATATATAAAGGTATATATATATATATTGGACTAAACTAAAGAAAGGAGTTTACATCGTAAAATGTCGCGGATTGCAGTGGAGTGGGGTTTAGCTTTGGTGTCGTTG
*********************************************************************************************************************************************(((((.(((((((......))))))).))))).............((((((...............)))))).....................******************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 O002
Head
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
.....................................................AGCAGTGGTGGGCTTATTAAA................................................................................................................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................ATGGCGCGGAGTGTAGTGGAGT....................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................CGGCTGCAAACATTATAAGTT..................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................GGAAAGCTCGCAAAACGCAAG.................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................TCACTTGGCTGAAGTTTAAC............................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................TGCAGAGTGGGTGTAAGGCTAA......................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................TAGTGGTGGGCTTGTTAGAGAT............................................................................................................................................................................................................................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................ACATCGTAAAATGTCGCGGA................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................AAGTTCTTTGTCGTTGATT..................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................CGGGGATTGCAGTAGAATG...................... 19 3 3 0.33 1 0 0 0 0 0 1 0 0 0
..........................................................................................TCGCAGAACGCTAGGGATT............................................................................................................................................................................................................................................................. 19 3 6 0.17 1 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................................................................................................................ATGGCAGTGGTGTGGGTTTT................ 20 3 11 0.09 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................CACTTGTCTGAATTTTAA............................................................................................................................................................................................................. 18 2 12 0.08 1 0 0 0 0 0 0 0 1 0
................................TGATTTTGAAGTCTT........................................................................................................................................................................................................................................................................................................................... 15 1 13 0.08 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................AAAACAGGTTGCAGCGT....................................................................................................................................................................................... 17 2 18 0.06 1 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................................................................................................AGACAGGAGTTTAAATC.................................................. 17 2 19 0.05 1 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................................................................................................................AAAATGTCTCGGGTTGCAT............................. 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:18604601-18604962 + dsi_20888 CAACAT-ATA----------AA---AAA----AAACTT------CAA----------------------GAAACAGCAACTAAA-A-------------------------------CTTCAGCA-----------------------------------------------------------------------------------------------------TGGGT----CTCATC-ACCACCCGAATAA-----TTTCTAT-------TCTTTC----------CTTTCGAG--CGTT--TTGC--GTTC-------------CCAA--ATAGGCCGACG-T----TTGTAATATTCAACTTGAAGTGAA---------CCGACTTCAAATTGAATATTTT-GG----CCAACGTC---TC-ACCCA----CAT-TCTGATTTTGAGA------------------TTTC--------AAACTCTCTTT----T-CT-TCGTTATTTTTC--TC--ATTGTTGT----TTCA--------TATATATA------T--AG-CATATATATTTCC------ATATATATATATATAACCTGATTTGATTTCTTTCCTCAAATGTAGCA--TTTTACAGCGC----CTAACGT----CA----------------------------CCTCACCCC-AAATCGA-----AAC--CA---CAG--------CA---------AC
droSec2 scaffold_7:2678142-2678498 + CAACAT-ATA----------AA---AAA-----AACTT------CAA----------------------GAAACAGCAACTAAA-A-------------------------------CTTCAGCA-----------------------------------------------------------------------------------------------------TGGGT----GTCATC-ACCACCCGAATAA-----TTTCTAT-------TCTTTC----------CTTTCGAG--CGTT--TTGC--GTTC-------------CCAA--ATA----GGCG-T----TTGTAATATTCAACTTGAAGTGAA---------CCGACTTCAAATTGAATATTTT-GG----CCAACGTC---TC-ACCCA----CAT-TCTGATTTTGAGA------------------TTTC--------AAACTCTCTTT----T-CT-TCGTTATTTTTC--TC--ATTGTTGT----TTCA--------TATATATA------T--AG-CATATATATTTCC------ATATATATATATATAACCTGATTTGATTTCTTTCCTCAAATGTAGCA--TATTACAGCGC----CTAACGT----CA----------------------------CCTCACCCC-AAATCGA-----AAC--CA---CAG--------CA---------AC
dm3 chr2L:19048147-19048510 + CAACAT-ATA----------AA---AAA----AAACTT------CAA----------------------GAAACAGCAACTAAA-A-------------------------------CTTCAGCA------------------------------------------------------------------------------------------------------GGGT----CTCATC-ACCACCCGAATAA-----TTTCAAT-------TCTTTT----------CTTTCGAG--CGTT--TTGC--GTTC-------------CCAA--TTAGGCCGACG-T----TTGTAATATTCAACTTGAACTGAA---------CCGACTTCAAATTGAATACTTT-CG----CCAACGTC---TC-ATCCA----CAT-TCTGATTTTGAGA------------------TTTC--------AAACTCTCTTT----T-CT-TCGTTATTTTTC--TC--ATTGTTGT-TGTTCCA--------TATATATA------T--AG-CATATATATTTCC------ATATATATATATATAACCTGATTTGATTTCTTTCCTCAAATGTAGCA--TTTTACAGCGC----CTAACGT----CA----------------------------CCTCACCCC-AAAACGA-----AAC--CA---CAG--------CA---------AC
droEre2 scaffold_4845:5222086-5222445 - CAACAT-ATA----------AA---AAA---AAAACTT------CAA----------------------AAAACAGCAACTAAA-A-------------------------------CTTCAGCA------------------------------------------------------------------------------------------------------GGGT----CTCATC-ACCACCCGAACAT-----TTTCTAT-------C---------------CTTTCGAG--CGTT--TTGC--GTTC-------------CAAA--ATATACCGACG-T----TTGTAATATTCAACTTGAAGTGAA---------CAGACTTCAATTTGAATATTTT-CG----CCAACGTC---CC-ATCCA----CAT-TCTGATTTTGAGA------------------TTTT--------GGACTCTCTTT----T-CT-TCGTTATTTTGC--TC--ATTGTTGT-TGTTCCA--------TATATATA------T--AG-CATATATATTTCC------ATATATATATATATAACCTGATTTGATTTCTTTCCTCAAATGTAGCA--TTTTACAGCGC----CTAACGT----CA----------------------------CCTCACCCC-AAAAAGA-----AAG--CA---CAG--------CA---------AC
droYak3 2R:5563995-5564351 + CAACAT-ATA----------AA---AAA----A-A-TT------CAA----------------------ATAACAGCAACTAAA-A-------------------------------CTTCAGCA------------------------------------------------------------------------------------------------------GGGT----CTCATC-ACCACCCGAATAC-----TTTCTAA-------C---------------CTTTCGAG--CGTT--TTTC--GTTC-------------TCAA--ATATACCGACG-T----TTGTAATATTCAACTTGAAGTGAA---------CAGACTTCAATTTGAATATTTT-CG----CCAACGTC---TC-ATCCA----CAT-TCTGATTTTGAGA------------------TTTC--------GAACTCTCTTT----T-CT-TCCTTATTTTGC--TC--ATTGTTGT-TGTTCCA--------TATATATA------T--AG-CATATATATTTCC------ATATATATATATATAACCTGATTTGATTTCTTTCCTCAAATGTAGCA--TTTTACAGCGC----CTAACGT----CC----------------------------CTTCACCGA-AAAAAGA-----AAG--CA---CAG--------CA---------AC
droEug1 scf7180000409463:1376198-1376554 + CAACAT-CCA----------AA---AAA----AAAC--CT----AAAAT-----------------CATAAAGCAGGAACTAAA-T-------------------------------ATTCTGCA------------------------------------------------------------------------------------------------------GGGT----CCCATA-ACCACCCGAATAT-----TTTCTAT-------T----------------TTTCGAG--CGAT--TTGC--GTTTC------------AAAA--ATATAAAGACG-T-----TGTAATATTCAACTTGAAGTGAA---------AGATCTTCGATTTGAATATTTC-CT----CCAACGTC---TC-ATCCA----TTT-TCTGATTTTGAGA------------------TTTA--------AAACTCTCTTT----TTCT-CCGTTGTTTTTC--CCCAA-----------TTCA--------TATATATA------T--CA-CATATATATTTCC------ATATATATATATATAACCTGATTTGATTTCTTTCCTCAAATGTAGCA--TTTTACAGCGC----CTAACGT----CA----------------------------CTTCACCCC-AAA-TAC-----AAC--CA---CAG--------CA-------TCGC
droBia1 scf7180000302422:4599485-4599847 - CAACAT-CCA----------AA---AAA------AC--------AAAAC-----------------GATAAAACAGCAACTAAAAA-------------------------------CTTCTGCA------------------------------------------------------------------------------------------------------GGGT----CCCATC-ACCACCCGAGTAT-----TTTCTAC-------T----------------TTTCGAG--CGTT--TTGC--GTTC-------------CCAA--ATATAACGACG-T-----TGTAATATTCAACTTGAAGTGAG---------CGAACTTCGATTTGAATATTTC-CG----CCAACGTC---TC-ATACA----TTT-TCTAATTTTGAGA------------------TTTC--------AAACTCTCTTT----T-CT-CAGTTATTTTTC--TC--ATTGTTGT-TGTTCCA--------TATATATATATATAC--CG-CATATATATTTCC------AGA--TATATATATAACCTGATTTGATTTCTTTCCTCAAATGTAGCA--T-TTACAGCGC----CTAACGT----CA----------------------------CCTCACCCC-AAA-AAC-----AGC--CG---CAG--------CA-------ACGC
droTak1 scf7180000416007:166191-166558 - CAACAT-CCA----------AA---AAAAAGA-AAC--CT----AAAAT-----------------GATAAAACAGCAACTAAA-A-------------------------------CTTCTGCA------------------------------------------------------------------------------------------------------GGGT----CCCATC-ACCACCCGAATTC-----TTTCTAT-------TT--------------TTTTCGAG--CGTT--TTGC--GCTC-------------CCAA--ATATACCGACG-T-----TGTAATATTCAACTTGAAGTGAA---------CGCCCTTCGATTTGAATATTTC-CA----CCAACGTC---CCAATCCA----TAT-TCTAATTTTGAGA------------------TTTC--------GAACTCTCTTT----T-TT-CCGTTATTTTTC--TC--ATTGTTGTTTGATCCA--------TATATATA------TACCG-CATATATATTTCC------A----TATATATATAACCTGATTTGATTTCTTTCCTCAAATGTAGCA--TTTTACAGCGC----CTAACGT----CA----------------------------CCTCACCCC-AAA-AAC-----AAC--CG---CAG--------CA-------ACGC
droEle1 scf7180000491046:3952509-3952887 - CAACAT-CCA----------CA---AGA----AAACC-CG----AAAAT-----------------GA-TAAACAGCAACTAAA-A-------------------------------CTTCTGCA------------------------------------------------------------------------------------------------------GGGT----TCCATT-ACCACCCAAATAA-----TTTCCAT-------T----------------TTTCGAA--CGTT--TTGC--GTTC-------------CCAA--ATATAACGACG-T-----TGTAATATTCAACTTGAAGTGAA---------GACACTTCGATTTGAATATTTC-CT----TCAACGTCA--AT-ATCCA----TAT-TCTAATTTTGAGA------------------TTTC--------AAATTCTCTTT----T-CT-ACGTTATTTTTC--TC--ATAGTTGT-TGTTTCA--------TA--TATA------C--CG-CATATATATTAC-----ATATATATATATCTATAACCTGATTTGATTTCTTTCCTCAAATGTAGCA--TTTTACAGCGC----CTAACGT----CA----------------------------CCTCACCCC-AAAAAAC-----AAC--CA---CAGCCCCCCAACAACCAGCGACGC
droRho1 scf7180000779213:12710-13068 + CAACAT-CCA----------AA---AAA------AC--CG----AAATT-----------------GATAAAACAGCAACTAAA-A-------------------------------CTTCTGCA------------------------------------------------------------------------------------------------------GGGT----CCCATT-ACCACCCGAATAT-----TTTCTAT-------T---------------TTTTCGAA--CGTT--TTGC--GTTC-------------ATAA--ATATATTGATG-T-----TGTAATATTCAACTTGAAGTGAA---------CGCACTTCGATTTGAATATTTC-CG----CCAACGTC---AC-ATCCA----TAT-TCTAATTTTGAGA------------------TTTC--------GCACTCTCTTT----T-CT-TCGTTATTTTTC--CC--ATTGTTGT-TGTTCCA--------TA--TATA------C--AG-CATATATATT---------ACATATATATATATAACCTGATTTGATTTCTTTCCTTAAATGTAGCA--TTTTACAGCGC----CTAACGT----CA----------------------------CCTCACCCC-AAAAAGA-----ACC--CACTTCAG--------CG---------AC
droFic1 scf7180000454144:500527-500892 - CAACAC-CCA----------AA---AAG---AAAA-TCCG----AAAAT-----------------GATAAAACAGCAACTAAA-A-------------------------------CTTCTGCA------------------------------------------------------------------------------------------------------GGGT----CTCAACAACCACCCGAATTT-----TTTCTAT-------T---------------TCTTCGAG--CGTT--TTGC--GTTC-------------CCAAAAATATAAAGACG-T-----TGTAATATTCAACTTGAAGTGAT---------TGTACTTCGATTTGAATATTCC-CA----CCATCGTC---TT-ATCTA----TAT-TCTTAATTTGAGA------------------TTT---------AAATTCTCTTT----T-CT-CAGTTATTTTTC--TC--ATTGTTGT-TGTTCCA--------TA--TATA------G--CG-CATATATATTTCC----ATATATATATATATATAACCTGATTTGATTTCTTTCCTCAAATGTAGCA--TTTTACAGCGC----CTAACGT----CA----------------------------CCTCACCCC-AAAAAAC-----AAC--CA---CAG--------CA---------A-
droKik1 scf7180000302412:421398-421766 - CAGCAATCCA----------AC---AA-----CAAC----------A----------------------GCAGTAACAATT-AA-A-------------------------------CTCCTTTA------------------------------------------------------------------------------------------------------GGAT----CCT---------CCAAAACT-----TTTCAAT-------C---------------TCTTCGAG--CGTTA-TTGC--GTTC-------------TCAAA-ACTTAACGACG-T-----TGTAATGTTCAACTTGAAGTGAACGAACGAA-CGCACTTCAATTTGAATATTTC-CG----AATACGTTGTTTG-ATCCA----TT---TGGA--------------ATTTCTTTTAGACTTC--------AAAAACTTTTT----C-CT-CCTTTGTTTTTC-CTC--TTTGTTGT-TGATCCA--------TATATATA------TAGCA-CATATATATTTCCACATATATACATATATATATAACCTGATTTGATTTCTTTCCTCAAATGTAGCA--TTTTACAGCGC----CTAACGT----CA----------------------------CCTCACCCC-CAAAAAC-----AAC--AA---CAA--------CA---------AC
droAna3 scaffold_12916:5378334-5378693 - CAACAT-CCA----------TA---AAA-------C--T-----GAAAC-----------------GA-AAAACAGCAACTGAA-A-------------------------------CTTCTTCA------------------------------------------------------------------------------------------------------GGGT----TCCATT-ATTACCCGAATCTCTCC---AAAAT-------A---------------TTTTCAAG--CGTTT-TTGC--GCAT-------------TCAA--ATACATTAGCAGT-----TGTAATATTCAACTTGAAGTCAA-------A-TGTACTTCAATTTGAATATTTTTTA----CTGACGTT---TT-G---A----CAT-TCTAACTTTGAGA------------------TT-C--------AAATTACCCTT----T-TC-CCAGAACTCTTC--TC--ATTGTTGT-TGTTTTC--------TA--TATA------T--CA-CATATATATTTCT------------ATATATATAACCTGATTTGATTTTTTTCCTCAAATGTAGCA--TTTTACAGCGC----CTAACGT----CACCC-------------------------CGTCACCCC-TAAAAAC-----ATC--CA---CAGCCC-----CA-------CTAC
droBip1 scf7180000396568:1473359-1473720 + CAACAT-CCA----------TA---AAA-------C--T-----GAAAC-----------------GA-AAAACAGCAACCAAA-A-------------------------------CTTCTTGA------------------------------------------------------------------------------------------------------GGGT----TCCATT-ATTACCCGAATC------TTTCCAT-------TA--------------TGTCCAAG--CGTTTTTTGC--GCAT-------------TCAA--ATACATCAGTA-G-----TGTAATATTCAACTTGAAGTCAA-------A-TGGACTTCAATTTGAATATTTTTTA----CTGACGTT---TT-G---G----CAT-TCTAACTTTGAGA------------------TTTT--------AAATTACCTTT----T-AC-CCAGAACTCTTC--TC--ATTGTTGT-TGTTTTC--------TA--TATA------T--CA-CATATATATTTCT------ATATATATATATATAACCTGATTTGATTTTTTTCCTCAAATGTAGCA--TTTTACAGCGC----CTAACGT----CA----------------------------CCTCACCCCCAAAATAC-----ATC--CA---CAGCCC------C-------ACTC
dp5 4_group3:638582-639032 - CAACAT-GCACTCCACCACCAAACCA---AGC-AAC--C-ATCA-----CCCACAACAACAAAAGTGA-AAAATAGCAACTAAA---------------------AACAA--ACAAACTTCTATG------------------------------------------------------------------------------------------------------TGGT----CTCA-C-ATTACCCGCAAAA----TGTTCAAT-------T---------------TCTTCGAA--CGTTA-TCGCACGTTCCA-----------TTAA--ATATATTGACG-TTCTTATTAAATATTCAACTTGAAGTTCA-------AATCGACTTCAAATTGAATGTTTT-TG----CCAACGTT---TT-C---ACA--AAA-CTTAACTTGAAGATTTTCCACTTCTCTTCCACTT---------------TTTTTCACCT-CT-CCATTCTATTTC--TC--TTTGTTGT-TGTTCTTTTTGCCCACATATATA------T--TGACATATATATTTAT------ATATATACATATATAACCTGATATGATTTCTTTCCTCAAATGTAGCAATTTTTACAGCGC----CTAACGTCCATCA----------------------------CCTCACCTCCAAAAAAT----AAACTACA---CAGCCC-TCAACA---------TC
droPer2 scaffold_1:2114269-2114719 - CAACAT-GCACTCCACCACCAAACCA---AGC-AAC--C-ATCA-----CCCACAACAACAAAAGTGA-AAAATAGCAACTAAA---------------------AACAA--ACAAACTTCTATG------------------------------------------------------------------------------------------------------TGGT----CTCA-C-ATTACCCGCAAAA----TGTTCAAT-------T---------------TCTTCGAA--CGTTA-TCGCACGTTCCA-----------TTAA--ATATATTGACG-TTCTTATTAAATATTCAACTTGAAGTTCA-------AATCGACTTCAAATTGAATGTTTT-TG----CCTACGTT---TT-C---ACA--AAA-CTTAACTTGAAGATTTTCCACTTCTCTTCCACTT---------------TTTTTCACCT-CT-CCATTCTATTTC--TC--TTTGTTGT-TGTTCTATTTGCCCACATATATA------T--TGACATATATATTTAT------ATATATACATATATAACCTGATATGATTTCTTTCCTCAAATGTAGCAATTTTTACAGCGC----CTAACGTCCATCA----------------------------CCTCACCTCCAAAAAAT----AAACTACA---CAGCCC-TCAACA---------TC
droWil2 scf2_1100000004585:8158691-8159166 - TTATAA-AAA----------AA---AAA---AAA----------AAA----------------------AAAACAAAAACA-AA-A-------------------------------CTCACTTAAAATCATCAAATAATGGGTTATTTCTCAACAGAATTAACCCCGTTCCCCTGCCTCAATCCTTCAAAAGCAAAAAAGAAAAAAATAATAGTTCATTTC----------------------------------------TATATCTTTTTCTTGGTCTTTTTTTTGGTTTTCGAT--CGCT--TTGC--GTTCCGTAAAATATCATTC--------AAAGACG-TCGGTTTGTCATATTCAATTTGAAGTTAA-------A-CTAACTTCAATTTGAATATATACTT----GCAACGTC---TG-ACAGA----T------------AGGA------------------TTTCCAAAAACAAATTTTTCTTC----T-GCCCCTTTAATTTTT------TTTTTTGT-TTATCTA--------------TAC-----C--AA-CAAACA---ATAT------ATATATATATATATAACCTGATTTGATTTCTTTCCTCAAATGTAGCT--TTTTACAGCGCGCCTCTAACGT----CACCCTAAGTGTCGTCCTCGTCGTCGTCGTCGTCACCGT-------C-----GTC--AA---CAA--------CA---------AC
droVir3 scaffold_12963:5076820-5077150 - GAAGAA-AAA----------AA---AA------------------------------------------AAAACAGCAAGCAAA---------------------TACGGCAGC-----------------------------------------------------------------------------------------------AAT---TCATTTCAG--TGGTT-TTTCTCATC-AA-AGCCCAACAT-----TTTTTAT-------TTTGC---------------CATT--TGTT--CTGA--GT---------------------------------------TAAAATATTCAACTTGAAGTCAG---------TGTACTTCAATTTGAATATTTT-TC--CCCTAATGAC---TC-GAC---AAAGAAACCTAACAATGAGA------------------TTTC--------AATTTCTTTTT----T--T-TCCTCCCCCTTCTCT-----ATTTGC-TGTTCTA--------TA--TATA------C--C--TATATATA----T------ATATATACATACATAACTTGATTTGATTTCTTTCC-CAAATGTAGCT--TTTTACAGCGCA---ACAACTA----CA----------------------------GCT-----------------TCAAC--T--------CC-CCAACA---------AC
droMoj3 scaffold_6500:8961796-8962129 - CAAAAC-AAA----------AA---AAA----CAA----------AAAC-----------------AA-AAACAAAAACATAAAAATTTGAAAAAAGGAAGCATAGACAGCAAC-----------------------------------------------------------------------------------------------GATAGT---TTGAAG---TGCTTTTTC--CT--------GGA--AT-----TTTGAAT-------C---------------TTTTT-----CTTT--TTGA--GTTC-------------A--A----------------------TTATATTCAATTTGAAGTCAA-------ACTTCACTCCAAGTTGAATATTTT-CCATC-CCAATCAC---TC-AAC---GCAGAAACTTA---ATGAGA------------------TTTA--------AATTTCTTTCT----T-TT-TCCT----------------------------CC--------TATATATA------C--TTACATATATA----T------ATATATATCTACATAACATGAT-TGATTTCTTTCC-CAAATGTAGCT--TTTTACAGTGC----A--AC------------------------------------------AGC-AACAAGAACTTCAAC--TA---CAA--------CA---------AC
droGri2 scaffold_15252:423291-423636 + GAAGTC-ACC----------AC---AAC----AAATTT------TAA--GAGAAAACAACAAAACAAA-ATAATAGCAAGCAGA---------------------AGCAGCAGC-----------------------------------------------------------------------------------------------GAT---TCATTTC-GTGGGGCT----CTCATG-AAAGCCCTCACAT-----TTT-TAT------TTTTGCC----------ATTTTGAGAATGTT--CTGT--GT---------------------------------------GAAAATATTCCATTTGAAGTTAA-------GCTCAACTTCGAATTGAATATTTT-TG--C-GCAAACAC---TC-AGAAA----GATGAATAACATTGAGA------------------TTTA--------AATTTCTTTTT----T----TCCCCTTTTCTC--TA--TTT---GC-TGTTTTA--------TA--TATA------------------T----AC------CTACATATATACATAACTTGATTTGATTTCTTTCC-CAAATGTAGCT--TTTTACAGCGC----GCATCC--------------------------------------------------AC-----AAC--AA---CAA--------CA---------AC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAACAT-ATA----------AA---AAA----AAACTT------CAA----------------------GAAACAGCAACTAAA-A-------------------------------CTTCAGCA-----------------------------------------------------------------------------------------------------TGGGT----CTCATC-ACCACCCGAATAA-----TTTCTAT-------TCTTTC----------CTTTCGAG--CGTT--TTGC--GTTC-------------CCAA--ATAGGCCGACG-T----TTGTAATATTCAACTTGAAGTGAA---------CCGACTTCAAATTGAATATTTT-GG----CCAACGTC---TC-ACCCA----CAT-TCTGATTTTGAGA------------------TTTC--------AAACTCTCTTT----T-CT-TCGTTATTTTTC--TC--ATTGTTGT----TTCA--------TATATATA------T--AG-CATATATATTTCC------ATATATATATATATAACCTGATTTGATTTCTTTCCTCAAATGTAGCA--TTTTACAGCGC----CTAACGT----CA----------------------------CCTCACCCC-AAATCGA-----AAC--CA---CAG--------CA---------ACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................TTCAACTTGAAGTGAA---------CCGACT...................................................................................................................................................................................................................................................................................................................................................................2214.00440000000000000000
................................................................................................................................................................................................................................................................................................................................................TAGGCCGACG-T----TTGTAATATTCAACTTGA........................................................................................................................................................................................................................................................................................................................................................................................2913.00300000012000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATTTCTTTCCTCAAATGTAGCA--TT..............................................................................................................2813.00300000021000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGA------------------TTTC--------AAACTCTCTTT----T-CT-TCGT..............................................................................................................................................................................................................................................2712.00200000000000002000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTTCTTTCCTCAAATGTAGCA--TT..............................................................................................................2711.00100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................AATATTTT-GG----CCAACGTC---.................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................GTGAA---------CCGACTTCAAATTGAAT........................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TCAAATTGAATATTTT-GG----CCAACGTC---.................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GTC---TC-ACCCA----CAT-TCTGATTTTGA......................................................................................................................................................................................................................................................................................................2411.00100010000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TCGTTATTTTTC--TC--ATTGTTGT----T...................................................................................................................................................................................................................2411.00100000000000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--TC--ATTGTTGT----TTCA--------TATATATA------..........................................................................................................................................................................................2411.00100000010000000000
.........................................................................................................................................................................................................................................................GAATAA-----TTTCTAT-------TCTTTC----------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
..........................................................................................................................................................................................................................................................................................................................................................................CAACTTGAAGTGAA---------CCGAC....................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTC--TC--ATTGTTGT----TTCA--------TATATATA------..........................................................................................................................................................................................2611.00100000000010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--TTTTACAGCGC----CTAACGT----CA----------------------------CCT.....................................................2511.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGT----CA----------------------------CCTCACCCC-AAATCGA-----AAC--C............................2811.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................TGTAATATTCAACTTGAAGTGAA---------CCGAC....................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGCA--TTTTACAGCGC----CTAACGT----CA----------------------------CC......................................................2911.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................A----CAT-TCTGATTTTGAGA------------------T.................................................................................................................................................................................................................................................................................1811.00100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATATATAACCTGATTTGATTTCTT.................................................................................................................................2911.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................................GGCCGACG-T----TTGTAATATTCAACTTGA........................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................CAACTTGAAGTGAA---------CCGA.....................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
.....................................................................................................................................................................................................................................................................................TTC----------CTTTCGAG--CGTT--TTGC--GTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATATAACCTGATTTGATTTCTT.................................................................................................................................2711.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTC--------AAACTCTCTTT----T-CT-TCGTTATTTT........................................................................................................................................................................................................................................2811.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTTC--TC--ATTGTTGT----TTCA--------TATATA..................................................................................................................................................................................................2811.00100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CAAATTGAATATTTT-GG----CCAACGTC---TC-AC............................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCTCAAATGTAGCA--TTTTACAGC.......................................................................................................2611.00100000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCAAATGTAGCA--TTTTACAGCGC----.................................................................................................2611.00100000001000000000
...............................................................................................................................................................................................................................................................................................................T--TTGC--GTTC-------------CCAA--ATAGGCCGACG-T----T.........................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
.............................................................................AACTAAA-A-------------------------------CTTCAGCA-----------------------------------------------------------------------------------------------------TGGGT----CTCATC-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
droSec2
CAACAT-ATA----------AA---AAA-----AACTT------CAA----------------------GAAACAGCAACTAAA-A-------------------------------CTTCAGCA-----------------------------------------------------------------------------------------------------TGGGT----GTCATC-ACCACCCGAATAA-----TTTCTAT-------TCTTTC----------CTTTCGAG--CGTT--TTGC--GTTC-------------CCAA--ATA----GGCG-T----TTGTAATATTCAACTTGAAGTGAA---------CCGACTTCAAATTGAATATTTT-GG----CCAACGTC---TC-ACCCA----CAT-TCTGATTTTGAGA------------------TTTC--------AAACTCTCTTT----T-CT-TCGTTATTTTTC--TC--ATTGTTGT----TTCA--------TATATATA------T--AG-CATATATATTTCC------ATATATATATATATAACCTGATTTGATTTCTTTCCTCAAATGTAGCA--TATTACAGCGC----CTAACGT----CA----------------------------CCTCACCCC-AAATCGA-----AAC--CA---CAG--------CA---------ACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................TT------CAA----------------------GAAACAGCAACTAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
...................................................................................................................................................................................................................................................................................CTTTC----------CTTTCGAG--CGTT--TTGC--..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
...................................................................................................................................................................................................................................................................................................................................................................TAATATTCAACTTGAAGTGAA---------CCGACT...................................................................................................................................................................................................................................................................................................................................................................2711.0011000
........................................................................................................................................................................................................................................................................................................................................................................TTCAACTTGAAGTGAA---------CCGACT...................................................................................................................................................................................................................................................................................................................................................................2211.0010001
...................................................................................................................................................................................................................................................................................................................................................................................GTGAA---------CCGACTTCAAATTGA..........................................................................................................................................................................................................................................................................................................................................................2011.0011000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAGCA--TATTACAGCGC----CTAAC............................................................................................2411.0011000
.........................................................................................................................................................................................................................................................................................................G--CGTT--TTGC--GTTC-------------CCAA--AT.........................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................ATTTT-GG----CCAACGTC---TC-ACCCA----C....................................................................................................................................................................................................................................................................................................................2311.0011000
.......ATA----------AA---AAA-----AACTT------CAA----------------------GAAACAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TCGTTATTTTTC--TC--ATTGTTGT----TT..................................................................................................................................................................................................................2511.0011000
....................................................................................................................................................................................................................................................................TTTCTAT-------TCTTTC----------CTTTCGAG--C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
dm3
CAACAT-ATA----------AA---AAA----AAACTT------CAA----------------------GAAACAGCAACTAAA-A-------------------------------CTTCAGCA------------------------------------------------------------------------------------------------------GGGT----CTCATC-ACCACCCGAATAA-----TTTCAAT-------TCTTTT----------CTTTCGAG--CGTT--TTGC--GTTC-------------CCAA--TTAGGCCGACG-T----TTGTAATATTCAACTTGAACTGAA---------CCGACTTCAAATTGAATACTTT-CG----CCAACGTC---TC-ATCCA----CAT-TCTGATTTTGAGA------------------TTTC--------AAACTCTCTTT----T-CT-TCGTTATTTTTC--TC--ATTGTTGT-TGTTCCA--------TATATATA------T--AG-CATATATATTTCC------ATATATATATATATAACCTGATTTGATTTCTTTCCTCAAATGTAGCA--TTTTACAGCGC----CTAACGT----CA----------------------------CCTCACCCC-AAAACGA-----AAC--CA---CAG--------CA---------ACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCAAATGTAGCA--TTTTACAGCGC----C................................................................................................2717.0070000000000000000000000000000000000001000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201010000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGT----CA----------------------------CCTCACCCC-AAAACGA-----AAC--.............................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACAGCGC----CTAACGT----CA----------------------------CCTCACCC................................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................................................................CCAA--TTAGGCCGACG-T----TTGTAATATT................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TTCAAATTGAATACTTT-CG----CCAACGTC---.................................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCAAATGTAGCA--TTTTACAGCGC----C................................................................................................2614.0040000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACGT----CA----------------------------CCTCACCCC-AAAACGA-----AAC--.............................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TTCAAATTGAATACTTT-CG----............................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--ATTGTTGT-TGTTCCA--------TATATATA------..........................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGT----CA----------------------------CCTCACCCC-AAAACGA-----A.................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATAACCTGATTTGATTTCTTTCC..............................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTCCTCAAATGTAGCA--TTTTACAGC.......................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATATAACCTGATTTGATTTCT..................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TTAGGCCGACG-T----TTGTAATATTCAACT...........................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TCAAATTGAATACTTT-CG----CCAACGTC---T................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--TTTTACAGCGC----CTAACGT----C.....................................................................................2112.0020000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
............................................................................................................................................................................................................................................................TAA-----TTTCAAT-------TCTTTT----------CTTTCGAG--CGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----T-CT-TCGTTATTTTTC--TC--ATTGTTGT-.......................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TC-ATCCA----CAT-TCTGATTTTGAGA------------------TT................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TCTTTT----------CTTTCGAG--CGTT--TTGC--GTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACAGCGC----CTAACGT----CA----------------------------CCTCACCC................................................2612.0020000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTTC--TC--ATTGTTGT-TGTTCCA--------TA......................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................ACCCGAATAA-----TTTCAAT-------TCTTTT----------CTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTC--TC--ATTGTTGT-TGTTCCA--------TATATA..................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTTTC--TC--ATTGTTGT-TG.....................................................................................................................................................................................................................2112.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TT-CG----CCAACGTC---TC-ATCCA----CAT-TC...............................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAATGTAGCA--TTTTACAGCGC----C................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................C-ACCACCCGAATAA-----TTTCAAT-------TCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TGAACTGAA---------CCGACTTCAAATTGAATACT.....................................................................................................................................................................................................................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..................................................................................................................................................................................................................................................................................................................................................................................ACTGAA---------CCGACTTCAAAT.............................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACAGCGC----CTAACGT----CA----------------------------CCTCACC.................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTTC--TC--ATTGTTGT-.......................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................AACTTGAACTGAA---------CCGACTTC.................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT----T-CT-TCGTTATTTTTC--TC--ATTGT...........................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATAACCTGATTTGATTTCT..................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCTTTCCTCAAATGTAGCA--TTT.............................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC----CTAACGT----CA----------------------------CCTCACCCC-A.............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATA------T--AG-CATATATATTTCC------ATATA............................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTC--TC--ATTGTTGT-TGT....................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCC------ATATATATATATATAACCTGATT..........................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGT-TGTTCCA--------TATATATA------T--AG-CA..................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TCTTTT----------CTTTCGAG--CGTT--TTGC--G.................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................AA----AAACTT------CAA----------------------GAAACAGCAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATAACCTGATTTGATTTCTTT................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TCCA----CAT-TCTGATTTTGAGA------------------TTTC--------AAAC..................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................ACTAAA-A-------------------------------CTTCAGCA------------------------------------------------------------------------------------------------------GGGT----...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAATGTAGCA--TTTTACAGCGC----C................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGT----CA----------------------------CCTCACCCC-AAAACGA-----..................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CCA----CAT-TCTGATTTTGAGA------------------TTTC--------AAA...................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................CTTGAACTGAA---------CCGACTTCA................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TTT----------CTTTCGAG--CGTT--TTGC--GTTC-------------CC...............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TTC-------------CCAA--TTAGGCCGAA.................................................................................................................................................................................................................................................................................................................................................................................................................1720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CAACAT-ATA----------AA---AAA---AAAACTT------CAA----------------------AAAACAGCAACTAAA-A-------------------------------CTTCAGCA------------------------------------------------------------------------------------------------------GGGT----CTCATC-ACCACCCGAACAT-----TTTCTAT-------C---------------CTTTCGAG--CGTT--TTGC--GTTC-------------CAAA--ATATACCGACG-T----TTGTAATATTCAACTTGAAGTGAA---------CAGACTTCAATTTGAATATTTT-CG----CCAACGTC---CC-ATCCA----CAT-TCTGATTTTGAGA------------------TTTT--------GGACTCTCTTT----T-CT-TCGTTATTTTGC--TC--ATTGTTGT-TGTTCCA--------TATATATA------T--AG-CATATATATTTCC------ATATATATATATATAACCTGATTTGATTTCTTTCCTCAAATGTAGCA--TTTTACAGCGC----CTAACGT----CA----------------------------CCTCACCCC-AAAAAGA-----AAG--CA---CAG--------CA---------ACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGA------------------TTTT--------GGACTCTCTTT----T-CT-TC................................................................................................................................................................................................................................................2412.0020000002
..............................................A----------------------AAAACAGCAACTAAA-A-------------------------------CT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
.............................................................................................................................................................................................................................................................AT-----TTTCTAT-------C---------------CTTTCGAG--C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
.........................................................................................................................................................................................................................................................................AT-------C---------------CTTTCGAG--CGTT--TTGC--GTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC--TC--ATTGTTGT-TGTTCCA--------TATATAT.................................................................................................................................................................................................2711.0011000000
..........................................................................................................................................................................................................................................................................T-------C---------------CTTTCGAG--CGTT--TTGC--GTTC-------------CAAA--A..........................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TATTTT-CG----CCAACGTC---CC-A.............................................................................................................................................................................................................................................................................................................................1911.0010000010
droYak3
CAACAT-ATA----------AA---AAA----A-A-TT------CAA----------------------ATAACAGCAACTAAA-A-------------------------------CTTCAGCA------------------------------------------------------------------------------------------------------GGGT----CTCATC-ACCACCCGAATAC-----TTTCTAA-------C---------------CTTTCGAG--CGTT--TTTC--GTTC-------------TCAA--ATATACCGACG-T----TTGTAATATTCAACTTGAAGTGAA---------CAGACTTCAATTTGAATATTTT-CG----CCAACGTC---TC-ATCCA----CAT-TCTGATTTTGAGA------------------TTTC--------GAACTCTCTTT----T-CT-TCCTTATTTTGC--TC--ATTGTTGT-TGTTCCA--------TATATATA------T--AG-CATATATATTTCC------ATATATATATATATAACCTGATTTGATTTCTTTCCTCAAATGTAGCA--TTTTACAGCGC----CTAACGT----CC----------------------------CTTCACCGA-AAAAAGA-----AAG--CA---CAG--------CA---------ACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGC--TC--ATTGTTGT-TGTTCCA--------T.......................................................................................................................................................................................................2311.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................AAGTGAA---------CAGACTTCAATTTGAAT........................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--TTTTACAGCGC----CTAACGT----C.....................................................................................2011.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTTT----T-CT-TCCTTATTT.........................................................................................................................................................................................................................................2011.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................GTGAA---------CAGACTTCAATTTGAAT........................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.................................................................................................................................................................................................................................................................................................................................................ATACCGACG-T----TTGTAATATT................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................GTGAA---------CAGACTTCAATTTG...........................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGCGC----CTAACGT----CC----------------------------CTTCACCGA-..............................................2611.00101000000000
droEug1
CAACAT-CCA----------AA---AAA----AAAC--CT----AAAAT-----------------CATAAAGCAGGAACTAAA-T-------------------------------ATTCTGCA------------------------------------------------------------------------------------------------------GGGT----CCCATA-ACCACCCGAATAT-----TTTCTAT-------T----------------TTTCGAG--CGAT--TTGC--GTTTC------------AAAA--ATATAAAGACG-T-----TGTAATATTCAACTTGAAGTGAA---------AGATCTTCGATTTGAATATTTC-CT----CCAACGTC---TC-ATCCA----TTT-TCTGATTTTGAGA------------------TTTA--------AAACTCTCTTT----TTCT-CCGTTGTTTTTC--CCCAA-----------TTCA--------TATATATA------T--CA-CATATATATTTCC------ATATATATATATATAACCTGATTTGATTTCTTTCCTCAAATGTAGCA--TTTTACAGCGC----CTAACGT----CA----------------------------CTTCACCCC-AAA-TAC-----AAC--CA---CAG--------CA-------TCGCSizeHit CountTotal NormTotal
No Reads
droBia1
CAACAT-CCA----------AA---AAA------AC--------AAAAC-----------------GATAAAACAGCAACTAAAAA-------------------------------CTTCTGCA------------------------------------------------------------------------------------------------------GGGT----CCCATC-ACCACCCGAGTAT-----TTTCTAC-------T----------------TTTCGAG--CGTT--TTGC--GTTC-------------CCAA--ATATAACGACG-T-----TGTAATATTCAACTTGAAGTGAG---------CGAACTTCGATTTGAATATTTC-CG----CCAACGTC---TC-ATACA----TTT-TCTAATTTTGAGA------------------TTTC--------AAACTCTCTTT----T-CT-CAGTTATTTTTC--TC--ATTGTTGT-TGTTCCA--------TATATATATATATAC--CG-CATATATATTTCC------AGA--TATATATATAACCTGATTTGATTTCTTTCCTCAAATGTAGCA--T-TTACAGCGC----CTAACGT----CA----------------------------CCTCACCCC-AAA-AAC-----AGC--CG---CAG--------CA-------ACGCSizeHit CountTotal NormTotal
No Reads
droTak1
CAACAT-CCA----------AA---AAAAAGA-AAC--CT----AAAAT-----------------GATAAAACAGCAACTAAA-A-------------------------------CTTCTGCA------------------------------------------------------------------------------------------------------GGGT----CCCATC-ACCACCCGAATTC-----TTTCTAT-------TT--------------TTTTCGAG--CGTT--TTGC--GCTC-------------CCAA--ATATACCGACG-T-----TGTAATATTCAACTTGAAGTGAA---------CGCCCTTCGATTTGAATATTTC-CA----CCAACGTC---CCAATCCA----TAT-TCTAATTTTGAGA------------------TTTC--------GAACTCTCTTT----T-TT-CCGTTATTTTTC--TC--ATTGTTGTTTGATCCA--------TATATATA------TACCG-CATATATATTTCC------A----TATATATATAACCTGATTTGATTTCTTTCCTCAAATGTAGCA--TTTTACAGCGC----CTAACGT----CA----------------------------CCTCACCCC-AAA-AAC-----AAC--CG---CAG--------CA-------ACGCSizeHit CountTotal NormTotal
No Reads
droEle1
CAACAT-CCA----------CA---AGA----AAACC-CG----AAAAT-----------------GA-TAAACAGCAACTAAA-A-------------------------------CTTCTGCA------------------------------------------------------------------------------------------------------GGGT----TCCATT-ACCACCCAAATAA-----TTTCCAT-------T----------------TTTCGAA--CGTT--TTGC--GTTC-------------CCAA--ATATAACGACG-T-----TGTAATATTCAACTTGAAGTGAA---------GACACTTCGATTTGAATATTTC-CT----TCAACGTCA--AT-ATCCA----TAT-TCTAATTTTGAGA------------------TTTC--------AAATTCTCTTT----T-CT-ACGTTATTTTTC--TC--ATAGTTGT-TGTTTCA--------TA--TATA------C--CG-CATATATATTAC-----ATATATATATATCTATAACCTGATTTGATTTCTTTCCTCAAATGTAGCA--TTTTACAGCGC----CTAACGT----CA----------------------------CCTCACCCC-AAAAAAC-----AAC--CA---CAGCCCCCCAACAACCAGCGACGCSizeHit CountTotal NormTotal
No Reads
droRho1
CAACAT-CCA----------AA---AAA------AC--CG----AAATT-----------------GATAAAACAGCAACTAAA-A-------------------------------CTTCTGCA------------------------------------------------------------------------------------------------------GGGT----CCCATT-ACCACCCGAATAT-----TTTCTAT-------T---------------TTTTCGAA--CGTT--TTGC--GTTC-------------ATAA--ATATATTGATG-T-----TGTAATATTCAACTTGAAGTGAA---------CGCACTTCGATTTGAATATTTC-CG----CCAACGTC---AC-ATCCA----TAT-TCTAATTTTGAGA------------------TTTC--------GCACTCTCTTT----T-CT-TCGTTATTTTTC--CC--ATTGTTGT-TGTTCCA--------TA--TATA------C--AG-CATATATATT---------ACATATATATATATAACCTGATTTGATTTCTTTCCTTAAATGTAGCA--TTTTACAGCGC----CTAACGT----CA----------------------------CCTCACCCC-AAAAAGA-----ACC--CACTTCAG--------CG---------ACSizeHit CountTotal NormTotal
No Reads
droFic1
CAACAC-CCA----------AA---AAG---AAAA-TCCG----AAAAT-----------------GATAAAACAGCAACTAAA-A-------------------------------CTTCTGCA------------------------------------------------------------------------------------------------------GGGT----CTCAACAACCACCCGAATTT-----TTTCTAT-------T---------------TCTTCGAG--CGTT--TTGC--GTTC-------------CCAAAAATATAAAGACG-T-----TGTAATATTCAACTTGAAGTGAT---------TGTACTTCGATTTGAATATTCC-CA----CCATCGTC---TT-ATCTA----TAT-TCTTAATTTGAGA------------------TTT---------AAATTCTCTTT----T-CT-CAGTTATTTTTC--TC--ATTGTTGT-TGTTCCA--------TA--TATA------G--CG-CATATATATTTCC----ATATATATATATATATAACCTGATTTGATTTCTTTCCTCAAATGTAGCA--TTTTACAGCGC----CTAACGT----CA----------------------------CCTCACCCC-AAAAAAC-----AAC--CA---CAG--------CA---------A-SizeHit CountTotal NormTotal
No Reads
droKik1
CAGCAATCCA----------AC---AA-----CAAC----------A----------------------GCAGTAACAATT-AA-A-------------------------------CTCCTTTA------------------------------------------------------------------------------------------------------GGAT----CCT---------CCAAAACT-----TTTCAAT-------C---------------TCTTCGAG--CGTTA-TTGC--GTTC-------------TCAAA-ACTTAACGACG-T-----TGTAATGTTCAACTTGAAGTGAACGAACGAA-CGCACTTCAATTTGAATATTTC-CG----AATACGTTGTTTG-ATCCA----TT---TGGA--------------ATTTCTTTTAGACTTC--------AAAAACTTTTT----C-CT-CCTTTGTTTTTC-CTC--TTTGTTGT-TGATCCA--------TATATATA------TAGCA-CATATATATTTCCACATATATACATATATATATAACCTGATTTGATTTCTTTCCTCAAATGTAGCA--TTTTACAGCGC----CTAACGT----CA----------------------------CCTCACCCC-CAAAAAC-----AAC--AA---CAA--------CA---------ACSizeHit CountTotal NormTotal
No Reads
droAna3
CAACAT-CCA----------TA---AAA-------C--T-----GAAAC-----------------GA-AAAACAGCAACTGAA-A-------------------------------CTTCTTCA------------------------------------------------------------------------------------------------------GGGT----TCCATT-ATTACCCGAATCTCTCC---AAAAT-------A---------------TTTTCAAG--CGTTT-TTGC--GCAT-------------TCAA--ATACATTAGCAGT-----TGTAATATTCAACTTGAAGTCAA-------A-TGTACTTCAATTTGAATATTTTTTA----CTGACGTT---TT-G---A----CAT-TCTAACTTTGAGA------------------TT-C--------AAATTACCCTT----T-TC-CCAGAACTCTTC--TC--ATTGTTGT-TGTTTTC--------TA--TATA------T--CA-CATATATATTTCT------------ATATATATAACCTGATTTGATTTTTTTCCTCAAATGTAGCA--TTTTACAGCGC----CTAACGT----CACCC-------------------------CGTCACCCC-TAAAAAC-----ATC--CA---CAGCCC-----CA-------CTACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTC--TC--ATTGTTGT-TGTTTTC--------TA--T...................................................................................................................................................................................................2411.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCA--TTTTACAGCGC----CTAACGT----CACC..................................................................................2711.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTT---TT-G---A----CAT-TCTAAC...........................................................................................................................................................................................................................................................................................................1911.001010000
...................................................................................................................................................................................................................................................................................................................................................................................GTCAA-------A-TGTACTTCAATTTG...........................................................................................................................................................................................................................................................................................................................................................2011.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTA----CTGACGTT---TT-G---A----CAT-TCC..............................................................................................................................................................................................................................................................................................................2611.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA--TTTTACAGCGC----CTAACGT----......................................................................................2211.001100000
droBip1
CAACAT-CCA----------TA---AAA-------C--T-----GAAAC-----------------GA-AAAACAGCAACCAAA-A-------------------------------CTTCTTGA------------------------------------------------------------------------------------------------------GGGT----TCCATT-ATTACCCGAATC------TTTCCAT-------TA--------------TGTCCAAG--CGTTTTTTGC--GCAT-------------TCAA--ATACATCAGTA-G-----TGTAATATTCAACTTGAAGTCAA-------A-TGGACTTCAATTTGAATATTTTTTA----CTGACGTT---TT-G---G----CAT-TCTAACTTTGAGA------------------TTTT--------AAATTACCTTT----T-AC-CCAGAACTCTTC--TC--ATTGTTGT-TGTTTTC--------TA--TATA------T--CA-CATATATATTTCT------ATATATATATATATAACCTGATTTGATTTTTTTCCTCAAATGTAGCA--TTTTACAGCGC----CTAACGT----CA----------------------------CCTCACCCCCAAAATAC-----ATC--CA---CAGCCC------C-------ACTCSizeHit CountTotal NormTotal
No Reads
dp5
CAACAT-GCACTCCACCACCAAACCA---AGC-AAC--C-ATCA-----CCCACAACAACAAAAGTGA-AAAATAGCAACTAAA---------------------AACAA--ACAAACTTCTATG------------------------------------------------------------------------------------------------------TGGT----CTCA-C-ATTACCCGCAAAA----TGTTCAAT-------T---------------TCTTCGAA--CGTTA-TCGCACGTTCCA-----------TTAA--ATATATTGACG-TTCTTATTAAATATTCAACTTGAAGTTCA-------AATCGACTTCAAATTGAATGTTTT-TG----CCAACGTT---TT-C---ACA--AAA-CTTAACTTGAAGATTTTCCACTTCTCTTCCACTT---------------TTTTTCACCT-CT-CCATTCTATTTC--TC--TTTGTTGT-TGTTCTTTTTGCCCACATATATA------T--TGACATATATATTTAT------ATATATACATATATAACCTGATATGATTTCTTTCCTCAAATGTAGCAATTTTTACAGCGC----CTAACGTCCATCA----------------------------CCTCACCTCCAAAAAAT----AAACTACA---CAGCCC-TCAACA---------TCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................................TG----CCAACGTT---TT-C---ACA--AAA-CTTA.............................................................................................................................................................................................................................................................................................................2311.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGATTTTCCACTTCTCTTCCACTT---------------................................................................................................................................................................................................................................................................2711.0010100000000
.......................................................................AATAGCAACTAAA---------------------AACAA--ACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
............................................................................CAACTAAA---------------------AACAA--ACAAACTTCTATG------------------------------------------------------------------------------------------------------T......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
................................................................................................................................................................................................................................................................................................................................................TATATTGACG-TTCTTATTAAA....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
CAACAT-GCACTCCACCACCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACAGCGC----CTAACGTCCATC.....................................................................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................GTTCA-------AATCGACTTCAAATTGAAT........................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................TTCA-------AATCGACTTCAAATTGAAT........................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................AGTTCA-------AATCGACTTCAAATTGAAT........................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCTCAAATGTAGCAATTTTTACAG........................................................................................................2711.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTT---------------TTTTTCACCT-CT-CCATC.............................................................................................................................................................................................................................................2020.5010010000000
droPer2
CAACAT-GCACTCCACCACCAAACCA---AGC-AAC--C-ATCA-----CCCACAACAACAAAAGTGA-AAAATAGCAACTAAA---------------------AACAA--ACAAACTTCTATG------------------------------------------------------------------------------------------------------TGGT----CTCA-C-ATTACCCGCAAAA----TGTTCAAT-------T---------------TCTTCGAA--CGTTA-TCGCACGTTCCA-----------TTAA--ATATATTGACG-TTCTTATTAAATATTCAACTTGAAGTTCA-------AATCGACTTCAAATTGAATGTTTT-TG----CCTACGTT---TT-C---ACA--AAA-CTTAACTTGAAGATTTTCCACTTCTCTTCCACTT---------------TTTTTCACCT-CT-CCATTCTATTTC--TC--TTTGTTGT-TGTTCTATTTGCCCACATATATA------T--TGACATATATATTTAT------ATATATACATATATAACCTGATATGATTTCTTTCCTCAAATGTAGCAATTTTTACAGCGC----CTAACGTCCATCA----------------------------CCTCACCTCCAAAAAAT----AAACTACA---CAGCCC-TCAACA---------TCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTTCTTTCCTCAAATGTAGC...................................................................................................................2411.001010000
..........................................................................................................................................................................................................................................................................................................................................................................CAACTTGAAGTTCA-------AATCGACT...................................................................................................................................................................................................................................................................................................................................................................2211.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACAGCGC----CTAACGTCCATCA----------------------------CCT.....................................................2611.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAATTTTTACAGCGC----CT...............................................................................................2111.001100000
....................................................................................................................................................................................................................................................................................................TTCGAA--CGTTA-TCGCACGTTCCA-----------TT...............................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
droWil2
TTATAA-AAA----------AA---AAA---AAA----------AAA----------------------AAAACAAAAACA-AA-A-------------------------------CTCACTTAAAATCATCAAATAATGGGTTATTTCTCAACAGAATTAACCCCGTTCCCCTGCCTCAATCCTTCAAAAGCAAAAAAGAAAAAAATAATAGTTCATTTC----------------------------------------TATATCTTTTTCTTGGTCTTTTTTTTGGTTTTCGAT--CGCT--TTGC--GTTCCGTAAAATATCATTC--------AAAGACG-TCGGTTTGTCATATTCAATTTGAAGTTAA-------A-CTAACTTCAATTTGAATATATACTT----GCAACGTC---TG-ACAGA----T------------AGGA------------------TTTCCAAAAACAAATTTTTCTTC----T-GCCCCTTTAATTTTT------TTTTTTGT-TTATCTA--------------TAC-----C--AA-CAAACA---ATAT------ATATATATATATATAACCTGATTTGATTTCTTTCCTCAAATGTAGCT--TTTTACAGCGCGCCTCTAACGT----CACCCTAAGTGTCGTCCTCGTCGTCGTCGTCGTCACCGT-------C-----GTC--AA---CAA--------CA---------ACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................ATATACTT----GCAACGTC---TG-ACAGA----.....................................................................................................................................................................................................................................................................................................................2313.00330000
.................................................................................................................................................................................................................................................................................CTTGGTCTTTTTTTTGGTTTTCGAT--C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00210010
...................................................................................................................................................................................................................................................................................................................................................................................GTTAA-------A-CTAACTTCAATTTGAAT........................................................................................................................................................................................................................................................................................................................................................2312.00202000
..................................................................................................................................................TTTCTCAACAGAATTAACCCCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................C---TG-ACAGA----T------------AGGA------------------TTTCCAAAAACA......................................................................................................................................................................................................................................................................2511.00110000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTAACGT----CACCCTAAGTGT..........................................................................2211.00100010
.................................................................................................................................................................................................................................................................................................................................................................TGTCATATTCAATTTGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TTTTACAGCGCGCCTCTAACGT----......................................................................................2311.00100010
............................................................................................................................................................................................................................................................................................................................................................CGGTTTGTCATATTCAATTTGAA.......................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
........................................................................................................................................................................................................................................................................................................AT--CGCT--TTGC--GTTCCGTAAAATATC...................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTCTAACGT----CACCCTAAGT............................................................................2211.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................ATATACTT----GCAACGTC---TG-ACA...........................................................................................................................................................................................................................................................................................................................2111.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................ATACTT----GCAACGTC---TG-ACAG..........................................................................................................................................................................................................................................................................................................................2011.00101000
.........................................................................................................................................................................................................................................................................................................T--CGCT--TTGC--GTTCCGTAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.......................................................................................................................................................................GTTCCCCTGCCTCAATCCTTCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
.....................................................................................................................................................................................................................................................................................................................................................................................TAA-------A-CTAACTTCAATTTGAAT........................................................................................................................................................................................................................................................................................................................................................2111.00101000
.........................................................................................................................................................................................................................................................................................TTTTTTTGGTTTTCGAT--CGCT--TTGC--G.................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
..................................................................................................................................................................................................................................................................................................................................................................................................................ATATACTT----GCAACGTC---TG-ACAGA----T------------A.......................................................................................................................................................................................................................................................................................................2511.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACAGCGCGCCTCTAACGT----CACC..................................................................................2411.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCGTCGTCGTCACCGT-------C-----..................................1950.20100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTCGTCGTCGTCGTC.......................................................18200.05101000
droVir3
GAAGAA-AAA----------AA---AA------------------------------------------AAAACAGCAAGCAAA---------------------TACGGCAGC-----------------------------------------------------------------------------------------------AAT---TCATTTCAG--TGGTT-TTTCTCATC-AA-AGCCCAACAT-----TTTTTAT-------TTTGC---------------CATT--TGTT--CTGA--GT---------------------------------------TAAAATATTCAACTTGAAGTCAG---------TGTACTTCAATTTGAATATTTT-TC--CCCTAATGAC---TC-GAC---AAAGAAACCTAACAATGAGA------------------TTTC--------AATTTCTTTTT----T--T-TCCTCCCCCTTCTCT-----ATTTGC-TGTTCTA--------TA--TATA------C--C--TATATATA----T------ATATATACATACATAACTTGATTTGATTTCTTTCC-CAAATGTAGCT--TTTTACAGCGCA---ACAACTA----CA----------------------------GCT-----------------TCAAC--T--------CC-CCAACA---------ACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................T--CTGA--GT---------------------------------------TAAAATATTCAACTTGA........................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000001000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTA----CA----------------------------GCT-----------------TCAAC--T--------CC-CC...............2111.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAACCTAACAATGAGA------------------TTT...............................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TTTGC---------------CATT--TGTT--CTGA--GT---------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................TAAAATATTCAACTTGAAGTCAG---------TGT......................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTAGCT--TTTTACAGCGCA---.................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TTTTACAGCGCA---ACAACTA----CA----------------------------GCT-----------------....................................2511.001000000000000000000000000000100000000000000000000000000000000000
..............................................................................AGCAAA---------------------TACGGCAGC-----------------------------------------------------------------------------------------------AAT---TCAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................T-------TTTGC---------------CATT--TGTT--CTGA--GT---------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000
droMoj3
CAAAAC-AAA----------AA---AAA----CAA----------AAAC-----------------AA-AAACAAAAACATAAAAATTTGAAAAAAGGAAGCATAGACAGCAAC-----------------------------------------------------------------------------------------------GATAGT---TTGAAG---TGCTTTTTC--CT--------GGA--AT-----TTTGAAT-------C---------------TTTTT-----CTTT--TTGA--GTTC-------------A--A----------------------TTATATTCAATTTGAAGTCAA-------ACTTCACTCCAAGTTGAATATTTT-CCATC-CCAATCAC---TC-AAC---GCAGAAACTTA---ATGAGA------------------TTTA--------AATTTCTTTCT----T-TT-TCCT----------------------------CC--------TATATATA------C--TTACATATATA----T------ATATATATCTACATAACATGAT-TGATTTCTTTCC-CAAATGTAGCT--TTTTACAGTGC----A--AC------------------------------------------AGC-AACAAGAACTTCAAC--TA---CAA--------CA---------ACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................AACATAAAAATTTGAAAAAAGGAAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................CAA-------ACTTCACTCCAAGTTGAATATTTT-C.................................................................................................................................................................................................................................................................................................................................................2811.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................ATTTT-CCATC-CCAATCAC---TC-AAC---GCAGA...................................................................................................................................................................................................................................................................................................................2811.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGTTGAATATTTT-CCATC-CCAA........................................................................................................................................................................................................................................................................................................................................2611.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTA---ATGAGA------------------TTTA--------AATTT.................................................................................................................................................................................................................................................................2111.001100000
...........................................................................................................................................................................................................................TGAAG---TGCTTTTTC--CT--------GGA--AT-----TTTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
droGri2
GAAGTC-ACC----------AC---AAC----AAATTT------TAA--GAGAAAACAACAAAACAAA-ATAATAGCAAGCAGA---------------------AGCAGCAGC-----------------------------------------------------------------------------------------------GAT---TCATTTC-GTGGGGCT----CTCATG-AAAGCCCTCACAT-----TTT-TAT------TTTTGCC----------ATTTTGAGAATGTT--CTGT--GT---------------------------------------GAAAATATTCCATTTGAAGTTAA-------GCTCAACTTCGAATTGAATATTTT-TG--C-GCAAACAC---TC-AGAAA----GATGAATAACATTGAGA------------------TTTA--------AATTTCTTTTT----T----TCCCCTTTTCTC--TA--TTT---GC-TGTTTTA--------TA--TATA------------------T----AC------CTACATATATACATAACTTGATTTGATTTCTTTCC-CAAATGTAGCT--TTTTACAGCGC----GCATCC--------------------------------------------------AC-----AAC--AA---CAA--------CA---------ACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 11:40 AM