ID:

dsi_2086

 Coordinate:

3r:4683425-4683491 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACAAGGCGGCGTCTTTGGCCAAACGAAGACTTGGCACAGGAAGAATTAAGGTAAGACCGAATTTGCGATACATTCATTCGGATAAACTTGCTAACAAGAAGAGTGATCCTTCACCAGGTTTGGGGATGTGATATAATAGTCGACTGGGCCGATCCACAGGAGGAGCC
**************************************************............(((........((((((.......((((....))))..))))))........)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
.................................................................................................................................GATATAATAGTCGACTGGGCC................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TAATAGTCGACTGGGCCGATCCACAGGA...... 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...............................TGGCACAGGAAGAATTAAGGT................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................................................................................TGCTATCAAGAACTGTGATCC.......................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................GACTTGGCACAGGAA............................................................................................................................. 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................GAAGACTTGGCACAGGAAGAATT........................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................AAGACTTGGCACAGGAAGAAT......................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
............................................................................................CACAAGTAGAGTGATC........................................................... 16 2 20 0.25 5 0 0 1 0 0 0 2 2 0 0
.........................................................................................GCGCACAAGTAGAGTGATC........................................................... 19 3 16 0.19 3 0 0 0 0 0 0 2 0 0 1
.................................................................................................................................................TGGCCGATCCATATGAGGA... 19 3 16 0.06 1 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

TGTTCCGCCGCAGAAACCGGTTTGCTTCTGAACCGTGTCCTTCTTAATTCCATTCTGGCTTAAACGCTATGTAAGTAAGCCTATTTGAACGATTGTTCTTCTCACTAGGAAGTGGTCCAAACCCCTACACTATATTATCAGCTGACCCGGCTAGGTGTCCTCCTCGG
**************************************************............(((........((((((.......((((....))))..))))))........)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR902009
testis
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
................................................................................................................................................ACCCCGCTAGGTGCCCT...... 17 2 8 5.50 44 35 0 0 0 8 0 1 0 0
.........................................................................................................................................TCAGCGGACCCGGATAAGTG.......... 20 3 5 1.40 7 0 4 0 3 0 0 0 0 0
.........................................................................................................................................TCAGCTGACCCGGATAAGTGA......... 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................GCTGACCGGGCTAGGAGTC........ 19 2 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................TTGTCAGCGGACCCGGCTAAGTG.......... 23 3 1 1.00 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................CAGCTGACCCGGATAAGTG.......... 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................GACCCCGCTAGGTGTCCTTCCCG. 23 3 2 0.50 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................GACCCCGCTAGGTGCCCTTC.... 20 3 8 0.50 4 2 0 0 0 2 0 0 0 0
.........................................................................................................................................TCAGCGGACCCGGATAAGT........... 19 3 19 0.42 8 0 6 0 0 0 0 0 0 2
............................................................................................................................................GCTGACCGGGCTAGGAGT......... 18 2 3 0.33 1 0 0 1 0 0 0 0 0 0
..........................................................CATAAACGGGATGTAAGTAAG........................................................................................ 21 3 3 0.33 1 0 0 0 0 0 1 0 0 0
.........................................................................................................................................TCAGCGGACCCGGATAAG............ 18 3 20 0.30 6 0 6 0 0 0 0 0 0 0
.............................................................................................................................................CTGACCGGGCTAGGAGTC........ 18 2 4 0.25 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................................TGTCAGCTGACCCGGATAAG............ 20 3 5 0.20 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................ACCCTGCTAGGTGCCCT...... 17 2 6 0.17 1 0 0 0 0 1 0 0 0 0
.............................................................................AGCCAATTGGAACGAT.......................................................................... 16 2 20 0.15 3 0 0 0 0 1 0 0 2 0
..........................................................CATAAACGGGATGTAAGTAA......................................................................................... 20 3 14 0.14 2 0 0 0 0 0 2 0 0 0
............................................................................................................................................GCTGACCGGGCTAGGAG.......... 17 2 16 0.13 2 0 0 2 0 0 0 0 0 0
.................................................................................................................................................CCCCGCTAGGTGTCCTTC.... 18 2 9 0.11 1 0 0 0 0 0 0 0 1 0
......................................................................................................................................TTGTCAGCGGACCCGGATAG............. 20 3 9 0.11 1 0 1 0 0 0 0 0 0 0
..........................................................................................GAGTGCTCTGCTCACTAGG.......................................................... 19 3 10 0.10 1 0 0 0 0 0 0 1 0 0
..............................................................................................................................................TGACCGGGCTAGGAGTC........ 17 2 14 0.07 1 0 0 1 0 0 0 0 0 0
...........................................................ATAAACGGGATGTAAGTAAG........................................................................................ 20 3 20 0.05 1 0 0 0 0 0 1 0 0 0
.................................................................................................................................................CCCCGCTAGGTGCCCT...... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0

Generated: 04/24/2015 at 10:21 AM