ID:

dsi_20852

 Coordinate:

3l:11389988-11390137 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-13.8 -13.7 -13.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GAACTAACATGTAGACTAACACTTTTGGCCAGCCATAATTAAATATATCTTTCTTTTTTTTGGCATTTAATCGCTTTAGTTCCCGTGTGTAATTTAGGTGGGGTGTTTGTTAGATTCAATCCTCCTTTAGCTTTTACTTGTAAACTTATTATTTAATAACATAATATAAATGTTTCACTAACTCTTCTGAATATTTTTAGGCACTGTCAAGTATTTCGCACCGACAGATGCAATGCACATGCTGAATGAT
**************************************************...........((((((((........((((..((.(((.((.(((((.((((...(((.......))).)))).))))).)).))).))..))))((((((........))))))))))))))............(((((....)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M053
female body
 SRR902008
ovaries
 O001
Testis
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553488
RT_0-2 hours eggs
............................................................................................................................................................................................................TGTCAAGTATTTCGCACCGA.......................... 20 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TCTGAATATTTTTAGGCACTG............................................ 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TGGCACTGTCAAGTATTTCGCACCGA.......................... 26 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
....TAACATGTAGACTAACACTTT................................................................................................................................................................................................................................. 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TGGCACTGTCAAGTATTTCGCACCGACA........................ 28 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.......CATGTAGACTAACACTTTTGG.............................................................................................................................................................................................................................. 21 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ACTGTCAAGTATTTCGCACCGAC......................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AATGGCACTGTCAAGTATTTCGCACCGA.......................... 28 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.........TGTAGACTAACACTTTTGGCC............................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ACTGTCAAGTATTTCGCACCGACAGA...................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TTCGCACCGACAGATGCAATGCACATGC........ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........TGTAGACTAACACTTTTGGCCT........................................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........ATGTAGACTAACACTTTTGGC............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGTCAAGTATTTCGCACCGACAGA...................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............AGACTAACACTTTTGGCCAGC......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................ATGGCACTGTCAAGTATTTCGCACCGAC......................... 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TGGCACTGTCAAGTATTTCGCACCGAAA........................ 28 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................ATGGCACTGTCAAGTATTTCGCACCGA.......................... 27 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CTGTCAAGTATTTCGCACCGA.......................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TTCTGAATATTTTTAGGCACT............................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CTGTCAAGTATTTCGCACCG........................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....TAACATGTAGACTAACACTTTTGGCCAGC......................................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......CATGTAGACTAACACTTTTGGCCAGCCA....................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................TTAGCTTTTACTTGTAAACT........................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CACCGACAGATGCAATGCACATGCT....... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ATGGCACTGTCAAGTATTTCGCGCCGA.......................... 27 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TGGCACTGTCAAGTATTTCGCACCGAC......................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................AAGTATTTCGCACCGACAGATGCAA................. 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.........TGTAGACTAACACTTTTGGCCAGCCA....................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
......ACATGTAGACTAACACTTTTGG.............................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................TAGATTCAATCCTCCTTTAGCTTT.................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................GTTTGTTAGATTCAATCCTC.............................................................................................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................GTCCAGGATTTCGCACCG........................... 18 2 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................GTCAAGTCTTTCGCA.............................. 15 1 8 0.25 2 2 0 0 0 0 0 0 0 0 0 0
.................................................................TTTAATCGCAGTAGTACCC...................................................................................................................................................................... 19 3 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................................ACTGTTGAGTATTTCGGAC............................. 19 3 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................TTTTTAGGGACTGTCTAGA...................................... 19 3 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................TCTTGCATTTAATCGCT............................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................ACCATGCAAATGCTGAATGA. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
............................................................................TAGTGCCCGTCTGTAA.............................................................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TGAATATTTTAAGGC................................................ 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CTTGATTGTACATCTGATTGTGAAAACCGGTCGGTATTAATTTATATAGAAAGAAAAAAAACCGTAAATTAGCGAAATCAAGGGCACACATTAAATCCACCCCACAAACAATCTAAGTTAGGAGGAAATCGAAAATGAACATTTGAATAATAAATTATTGTATTATATTTACAAAGTGATTGAGAAGACTTATAAAAATCCGTGACAGTTCATAAAGCGTGGCTGTCTACGTTACGTGTACGACTTACTA
**************************************************...........((((((((........((((..((.(((.((.(((((.((((...(((.......))).)))).))))).)).))).))..))))((((((........))))))))))))))............(((((....)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 M023
head
 M053
female body
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
........................................................................................................................................................................................................................GCGTGGCTGTCTACGTTACGT............. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TTGGCTGTCTACGTTACGTGT........... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GACAGTTCATAAAGCGTGGC........................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................CCCACAAACAATCTAAGTTAG................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................TAAGTTAGGAGGAAATCGAAA.................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGTGGCTGTCTACGTTACGT............. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................TCATAAAGCGTGGCTGTCTA..................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................AAGTTAGGAGGAAATCGAAAA................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GTGGCTGTCTACGTTACGTGT........... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................TAAGTTAGGAGGAAATCGAAAATG................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CGGCTGTCTACGTTACGTGT........... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................ATGAACATTTGAATA..................................................................................................... 15 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................CGAGAAAACTTATAAAAATC.................................................. 20 2 7 0.43 3 0 0 3 0 0 0 0 0 0 0 0
.......................................................................................................................AGGAGGCAATGGAAAAT.................................................................................................................. 17 2 10 0.40 4 0 0 0 0 0 0 1 0 3 0 0
...............GATTGTGGAGGCCGGTCGGTA...................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0
...................................................AGAAAAAAAACCGTAA....................................................................................................................................................................................... 16 0 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................ATGTTAGGAGGATATCG....................................................................................................................... 17 2 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0
.......GTACATCTGATTGTCAAGT................................................................................................................................................................................................................................ 19 3 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0
...............................................................................AAGGGCAGACATTAA............................................................................................................................................................ 15 1 16 0.13 2 0 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................AAAAATCTGCGACAGTCCAT..................................... 20 3 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0
.........................................TTATATAGAAAGAAAGA................................................................................................................................................................................................ 17 1 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................AGACTGATAAACATCCGT............................................... 18 2 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................AGCGGAATCCAGGGC..................................................................................................................................................................... 15 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................ATTAATTAGCGATATCAAG........................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
...................................................................................................................AGTTTGAAGGAAATCGA...................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0

Generated: 04/24/2015 at 04:30 AM