ID:

dsi_20841

Coordinate:

2r:5592185-5592334 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-34.8	-34.8	-34.7

Flybase annnotation

CDS [2r_5592335_5592437_+]; exon [2r_5592335_5592437_+]; intron [2r_5592029_5592334_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TCCGATAACATAACTCATGCTATGCCATTGCCGTAGAGCGACTCTTCCGAGGTCGAGTGTGATCAGAGTACAAACTATAGCACCGATAATTCGGTAAGAGCTTACATGCCAGGCTCTTAATCGAGGCCAACAAACTCAAAGCAGCTTTTTCTGGGCACAATTTGAGGTGTATTCTTATACGAATGTTATTTCTTACCCAGCAGACGCAAGATAACAAGTTTGATGGCAATGCAATCGACTCACAAAATCA ************************************************.((((.((((......(((....)))...)))))))).....((((((((...((((....(((.(((....))))))......((((((...((((.....))))....))))))(((((....)))))..))))...))))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M053 female body	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries
..........................................................................................................................................................................................................GACGCAAGATAACAAGTTTGATGGCAATG...................	29	0	1	1.00	1	0	1	0	0	0
.................................................................GAGTACAAACTATAGCACC......................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0
..........................................................................................................................................................................................................................TGTGATGCCAATGCAATC..............	18	2	12	0.08	1	0	0	1	0	0
.............................................................................................................CAAGCTCTTGATCGAAGCC..........................................................................................................................	19	3	15	0.07	1	0	0	0	1	0
....................................................................................................................................AACTCTAAGCAGCTTCT.....................................................................................................	17	2	20	0.05	1	0	0	0	0	1

Anti-sense strand reads

AGGCTATTGTATTGAGTACGATACGGTAACGGCATCTCGCTGAGAAGGCTCCAGCTCACACTAGTCTCATGTTTGATATCGTGGCTATTAAGCCATTCTCGAATGTACGGTCCGAGAATTAGCTCCGGTTGTTTGAGTTTCGTCGAAAAAGACCCGTGTTAAACTCCACATAAGAATATGCTTACAATAAAGAATGGGTCGTCTGCGTTCTATTGTTCAAACTACCGTTACGTTAGCTGAGTGTTTTAGT ************************************************.((((.((((......(((....)))...)))))))).....((((((((...((((....(((.(((....))))))......((((((...((((.....))))....))))))(((((....)))))..))))...))))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	M025 embryo	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
..........................................AGAAGGCTCCAGCTCACAATA...........................................................................................................................................................................................	21	1	1	1.00	1	1	0	0	0	0
...........................................................................................................................TCCGGTTGTTGCAGGTTCGTC..........................................................................................................	21	3	4	0.50	2	0	0	2	0	0
................................................................................................................GGAGAATGAGCTCCGGTTG.......................................................................................................................	19	2	3	0.33	1	0	1	0	0	0
......................ACGGTAACGGCATCT.....................................................................................................................................................................................................................	15	0	4	0.25	1	0	0	0	1	0
....................................TCCCTGAGAAGGCTCCG.....................................................................................................................................................................................................	17	2	6	0.17	1	0	1	0	0	0
AGGCTATTGTATTCA...........................................................................................................................................................................................................................................	15	1	6	0.17	1	1	0	0	0	0
...................................CTCCCTTTGAAGGCTCCAG....................................................................................................................................................................................................	19	3	17	0.06	1	0	1	0	0	0
......................ACGGTAACGTCATCT.....................................................................................................................................................................................................................	15	1	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................CTCGTCTGCGTACTAT.....................................	16	2	20	0.05	1	0	0	0	0	1

Generated: 04/23/2015 at 06:04 PM