ID:

dsi_2084

 Coordinate:

2r:18742814-18742952 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.1 -12.1 -11.6 -11.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GTGTTGAATACGCGCTAAACTAGAAAGCGATCCCACGATCAATCGACTCGGTAAAGCAAAACAAGCCATCGAAATCAACAGACGAGCACGTGATTAGCGTCCCAAGTCGTAAAGCATAGAATAGTGCCGAATTGATTATAGCAATCGTTGTGTCGGCCAAATCCAATAAAGTTTGTGTGTTTCTTCCAGCGATCAAAAACCAATATTTGGATTAACCCGCTTCACTTTGAGAAAAGTTG
*****************************************************************************************..((((..........((((....((((((.....(((.............)))....))))))))))............))))****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 M025
embryo
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR902009
testis
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
.................AACTAGAAAGCGATCCCACGAT........................................................................................................................................................................................................ 22 0 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0 0 0
..................ACTAGAAAGCGATCCCACGAT........................................................................................................................................................................................................ 21 0 1 7.00 7 6 1 0 0 0 0 0 0 0 0 0 0 0
.........ACGCGCTAAACTAGAAAGC................................................................................................................................................................................................................... 19 0 1 4.00 4 3 0 0 0 0 0 0 0 0 1 0 0 0
...............................CCCACGATCAATCGACTCGGTAAAG....................................................................................................................................................................................... 25 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0
.............................ATCCCACGATCAATCGACT............................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CGTTGTGTCGGCCAAATCCAATAAAGTT.................................................................. 28 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0
.................AACTAGAAAGCGATCCCA............................................................................................................................................................................................................ 18 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................TATAGCAATCGTTGTGTC..................................................................................... 18 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................GTGATTAGCGTCCCAAGTCGTAAAGC............................................................................................................................ 26 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0
..........CGCGCTAACCTAGAA...................................................................................................................................................................................................................... 15 1 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0
..............................TCCCACGATCAATCGACTCGGTAAAG....................................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.............................ATCCCACGATCAATCGAC................................................................................................................................................................................................ 18 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................CATCGAAATCAACAGACG........................................................................................................................................................... 18 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.............GCTAAACTAGAAAGCGATCC.............................................................................................................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CGTTGTGTCGGCCAAATCC........................................................................... 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.................................................................CCATCGAAATCAACAGACG........................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...................CTAGAAAGCGATCCCACGAT........................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............TAGACTAGAAAGCGATCCCACGATCAAT.................................................................................................................................................................................................... 28 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................TCCCACGATCAATCGACT............................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........CGCGCTAAACTAGAAAGCG.................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..GTTGAATACGCGCTAAACT.......................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........CGCGCTAAACTAGAAAGC................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..GTTGAATACGCGCTAAACTAG........................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................AAACTAGAAAGCGATCCCACGATCA...................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................ATTATAGCAATCGTTGTGTCGGCCA................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........ACGCGCTAAACTAGAAAGCG.................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............................GATCCCACGATCAATCGACTCGGTAAAG....................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................ATCGAAATCAACAGACGA.......................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................ATCCCACGATCAATCGACTCGGTAAAG....................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................AGCAAAACAAGCCATCGAAATCAACAG.............................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................GTCGGCCAAATCCAATAAAGT................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................CGACTCGGTAAAGCAAAACAAGCCAT.......................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................CATCGAAATCAACAGACGA.......................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................ATAGAATAGTGCCGAATTGATT...................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................GAATTGATTATAGCAATCGTAGTGTCGGCC................................................................................. 30 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.......ATACGCGCTAAACTAGAAAGC................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........ACGCGCTAAACTAGAAAG.................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................TTGTGTGTTTCTTCCAGCGATCAA........................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................AAACAAGCCATCGAAATCAACAGAC............................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................ACTAGAAAGCGATCCCAC........................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................GCAATCGTTGTGTCGGAC................................................................................. 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................CCAATAAAGTTTGTGTGTTTCTTGCAGC................................................. 28 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................ATATTTGGATTAACCCGCTTCACTTTGA......... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................GTCCCAAGTCGTAAAGCATAGAATAG................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................GTGTCGGCCAAATCCAATAAAGTTT................................................................. 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................TCCAGCGATCAAAAACCA..................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.....GAATACGCGCTAAACTAGAAAGC................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................ACTAGAAAGCGATCCCACGAC........................................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TTATAGCAATCGTTGTGTCGGCC................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................CACGATCAATCGACTCGG............................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TTAACCCGCTTCACTTTGA......... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................TTGATTATAGCAATCGTTGTA....................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................ATCAATCGACTCGGTAAAG....................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................ATTATAGCAATCGTTGTGTCGGCCAA............................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................AGAAAGCGATCCCACGAT........................................................................................................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................ACTAGAAAGCGATCCCACGATCAAA.................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................TATAGCAATCGTTGTGTCGGC.................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................ATAGTGCCGAATTGATTAT.................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............GCTAAACTAGAAAGCGATCCCA............................................................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................ACTAGAAAGCGATCCCACGATCAATCGACT............................................................................................................................................................................................... 30 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................TCGACTCGGTAAAGCAAAACAAGC............................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................ATCGACTCGGTAAAGCAAAAC................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..GTTGAATACGCGCTAAACTAGAAAGC................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................TATAGCAATCGTTGTGTCGGCCAAATCC........................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................AAGCGATCCCACGATCAAT.................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............CTAAACTAGAAAGCGATCCC............................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................CGTTGTCGGCCAAATCCAATAAAGT................................................................... 25 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................GATCCCACGATCAATCGACTCG............................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CGTTGTGTCGGCCAAATCCAATAAAGG................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....GAATACGCGCTAGACTAGAAAGC................................................................................................................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................AGCAATCGTTGTGTCGGCCAAATCC........................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................CAAGTCGTAAAGCATAGAATAGTGCCG.............................................................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................GATCCCACGATCAATCGACTCGCGAT......................................................................................................................................................................................... 26 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................TCCCACGATCAATCGACTCGC............................................................................................................................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................AATCGACTCGGTAAAGCAAAACAAGCC............................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................CCACGATCAATCGACTCG............................................................................................................................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................CCAATAAAGTTTGTGTGT........................................................... 18 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
......ACTGCGCGCTAACCTAGAA...................................................................................................................................................................................................................... 19 3 11 0.45 5 0 0 0 0 0 1 0 0 2 0 0 0 2
.............................................................................................................................................CAATCCTTGTGTCGG................................................................................... 15 1 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.........GCGCGCTAACCTAGA....................................................................................................................................................................................................................... 15 2 20 0.30 6 0 0 0 0 0 5 0 0 0 0 0 0 1
........TGCGCGCTAACCTAGA....................................................................................................................................................................................................................... 16 2 13 0.23 3 0 0 0 0 0 1 0 0 0 0 0 0 2
.............................................................................................................................................................................................................TTTGGATTAAGCCGCT.................. 16 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........CGCGCTAACCTAGAACCC................................................................................................................................................................................................................... 18 3 18 0.17 3 1 0 0 0 0 1 0 0 0 0 0 0 1
............................................GACTCGGTAGCGCAA.................................................................................................................................................................................... 15 2 20 0.15 3 0 0 0 0 0 3 0 0 0 0 0 0 0
........................AGACGATCCGACGATCAATC................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................GTACCAAGTCGTTAAGGAT.......................................................................................................................... 19 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.TGTTGAATACGAGCT............................................................................................................................................................................................................................... 15 1 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................CCAAGTGGTAAAGCA........................................................................................................................... 15 1 11 0.09 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................GTCCGACGATCTATCGAC................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................AAGACGATCCGACGATCA...................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

CACAACTTATGCGCGATTTGATCTTTCGCTAGGGTGCTAGTTAGCTGAGCCATTTCGTTTTGTTCGGTAGCTTTAGTTGTCTGCTCGTGCACTAATCGCAGGGTTCAGCATTTCGTATCTTATCACGGCTTAACTAATATCGTTAGCAACACAGCCGGTTTAGGTTATTTCAAACACACAAAGAAGGTCGCTAGTTTTTGGTTATAAACCTAATTGGGCGAAGTGAAACTCTTTTCAAC
******************************************************************..((((..........((((....((((((.....(((.............)))....))))))))))............))))***************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
.................................................................................................................................................................................................................ATAATTGGGCTAAGTGAAA........... 19 2 3 0.33 1 1 0 0 0 0 0
............................................................................................................................AGGGCTCATCTAATATCGTT............................................................................................... 20 3 5 0.20 1 0 0 1 0 0 0
..................................TGGTAGTTAGGTGAGTCATT......................................................................................................................................................................................... 20 3 10 0.10 1 0 1 0 0 0 0
.............................................................................................................................CGGCTTAACTAAATTCGT................................................................................................ 18 2 14 0.07 1 0 0 0 1 0 0
...............................................................................................................................................................................................TAGTTTTTGGTTACGAAC.............................. 18 2 17 0.06 1 0 1 0 0 0 0
...................................................................................................................................................................................................................ATTTGGGCCAGGTGAAACT......... 19 3 17 0.06 1 0 0 0 0 1 0
........................................................................................................................................................................................AGGTCGCTAGTTTTG........................................ 15 1 18 0.06 1 1 0 0 0 0 0
..........................CGCTAGGGTGCTAGGTG.................................................................................................................................................................................................... 17 2 19 0.05 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................TTGGGCTAAGTGAAA........... 15 1 19 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................................................CTAGTTTTGGGTTAT.................................. 15 1 20 0.05 1 0 1 0 0 0 0
.................................................................................................................................................................................................................AGAATTGGGCTAAGTGAAA........... 19 3 20 0.05 1 0 0 0 0 0 1
.................................................................................................................................................................................................................ATAATTGGCCGAAGGGAAA........... 19 3 20 0.05 1 0 0 1 0 0 0
...................................................................................................................................................................................................................AATTGGCCGAAGGGAAA........... 17 2 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................................................................................TAGTTTTGGGTTATA................................. 15 1 20 0.05 1 0 1 0 0 0 0
.......................................................................................................................................................................................TAGGTCGCTAGTTTT......................................... 15 1 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:18742764-18743002 + dsi_2084 GTG----------TTGAA------------------------TA-CGCGCTAAA-----CTAGAAAGCGATCCC--ACG--ATCAA-TCG--ACTCGGTAAAGCAA-AACAAGCCATCG---------------AAATCAACAGAC---GAGCACGTGA--TTAGCGTCCCAAGTCGTAAAGCATAGA----ATAGTGCCGA---------------------------------------ATT--GA-------TTA--TAGCAATCGTTGTGTCGGC------------------CA------A-ATCCAAT--AAAGTTTGTGTGTTTCTTCCAGCGATCAAAAACCAAT-ATTTGGATT---AACCCGCTTCACTTT--GAG--AAAAGTTG---
droSec2 scaffold_9:1514674-1514912 + GTG----------TTGAA------------------------TA-CGCGCTAGA-----CTAGAAAGCGATCCC--ACG--ATCAA-TCG--ACTCGGTAAAGCAA-AACAAGCCATAG---------------AAATCATCAGAC---GAGCACGTGA--TTAGCGTCCCAAGTCGTAAAGCATAGA----AAAGTGCCGA---------------------------------------ATT--GA-------TTA--TAGCAATCGTAGTGTCGGC------------------CA------A-ATCCAAT--AAAGTTTGTGTGTTTCTTCCAGCGATCAAAAACCAAT-ATTTGGATT---ACCCCGCTTCACTTT--GAG--AAAAGTTG---
dm3 chr2R:18205193-18205436 + GTG----------TTGAA------------------------TA-CGCGCTAGA-----CTAGAAAGCGATCCC--ACG--ATCAA-CCG--ACTCGGTAAAGCAA-AACAAGCCATCG---------------AAATCAACAGGC---GAGCACGTGA--TTAGCGTCCCAAGCCATAAAGCATAGA----AAAGTGCCGA---------------------------------------ATT--GAAC-CA-CTTT--CAGCAATCGTAGTGTCGGC------------------CA------A-ATCCAAT--AAAGTTTGTGTGTTTCTTTCAGCGATCAAAAACCAAT-ATTTGGATT---ACCCTGCTTCACTTT--GAG--AAAAGTTG---
droEre2 scaffold_4845:12345238-12345482 + GTG----------TTGAA------------------------TA-CGCGCTAGA-----ATAGAAAGCGATCCC--ACG--ATCAG-CCG--ACTCGGTAAAGCAA-AATAAGCCAGCG---------------AAATCAACAGCC---GAGCACGTGA--TTAGCGTCTCAAGTCGTAAAGCATAAA----ACAGTGCGGA---------------------------------------ACT--GAAG-CA-CCTT--TACCAATTGCAGTGTCGGC------------------CA------AATACCAAT--AAAGTTTGTGTGTTTCTTCCAGCGATCAAAAACCAAT-ATTTGGATT---ACTCCGCTTCACTTA--GAG--AAAAGTTG---
droYak3 2R:17956369-17956614 + GTG----------TTGAA------------------------TA-CGCGCTAGG-----CTAGAAAGCGATCCC--ACG--ATCAA-GCG--ACTCGGTAAAGCAA-AACAAGCCATCG---------------AAATCAACGGAC---GAGCACGTGA--TTAGCGTCTCAAGTCGAAGAGCATAAAA---TTAGTGCCGA---------------------------------------ATT--GAAA-CA-CTTT--TAGCAATCGTAGTGTCGGC------------------CA------AAATCCAAT--AAAGTTTGTGTGTTTCTTCCAGCGATCAAAAGCCAAT-ATTTGGATT---ACTCCGCTTCACTCA--GAG--AAAAGTTG---
droEug1 scf7180000409672:6108376-6108612 + GTG----------T-GAA------------------------AA-CGCGCTAGA-----GTAGAAAGCGATCCT--ACG--ATCAG-TCG--ATTCGGTAAAGCAA-AACAAGACAGCG---------------GAATTAACCGAC---GAGCACGTGA--TCAGCGTCTCAAGTCGTAAATAA-CTA----ACAGTGCCGG---------------------------------------AAG--GAA---A-CTTCATTTACCATCGTAGTGC-----------------------------CA-CTCCACT--AAAGTTTGTGTGTTTCTTCCAGCGATTAAAAACCAAT-TCTTGGATT---ACTCCGCTTCACTTA--GAA--ACCAGTTG---
droBia1 scf7180000302143:2503923-2504173 - GTGTCAACAGGTGTTGAA------------------------TA-CGCGCTACAATAAAGAAGAAAGCGATCTTCCACG--ATCGA-ACG--ACTCGGTAAAGCCA-AACAAGCCAGCG---------------GATTTAACGGTC---GAGCACGTGA--TCAGAGTCTCAATAGATAAATTA---A----AAAGTGCCGG---------------------------------------ACG--GAA--AA-CTTT--TAGCCACCGGTGTGC-----------------------------CA-AACCACT--AAAGTTTGTGTGTTTCTTCTAGCGATCAA-AACCAAT-TCTTGGATT---ACCCCGCTTCACTTA--GAG--ACCAGTTG---
droTak1 scf7180000415739:60776-61014 + GTG----------TTGAA------------------------TA-CGCGCTACA-----GTAGACAGCGATCCCATACG--ATCAA-TCG--ATTCGGTAAAGCAA-AACAAGCAAGCG---------------GAATTAACGAAC---GAGCACGTGA--TCAGCGTCTCAAGTCGTAAATTAAGAA----AAAGTGCCGG---------------------------------------ACC--AAA--AA-CTTG--AAACC-CCGGTGTGC-----------------------------CA-GTCCACT--AAAGTTTATGTGTTTCTTCTAGCGATCAAAAAGTCAC-TCTTGGATT---ACCCTGCTTCACTTA--GAG--ACCAGTTG---
droEle1 scf7180000491282:68911-69147 - GTG------------GAA------------------------TA-CGCGCTAGA-----GTAGAAAGCGATCTT--ACGAG-TCAA-CCG--AATCGGTAAAGCAA-AACAAGTTAGCG---------------GAATTAACGGAC---GAGCACGTGA--TCTGCGTCGCCAGTCGTAAATGA-ATT----ATTGTGCCGA---------------------------------------ATC--GAA--AA-CTTT--AAGCCACCAGAGTGC-----------------------------CA-ATCGACT--AAAGTTTGTGTGTTTCTTTTAGCGATCAAAAATCAATATCTTGGATT---ACCTCGCTTCACTTA--AAG--ACCAGTTG---
droRho1 scf7180000778226:22933-23175 - GAG----------TTGAA------------------------TA-CGCGCTAGA-----GTAGAAAGCGATCTT--ACGAG-TCAA-CCG--GATCGGTAAAGCAA-AACAAGCCAGCG---------------GAATTAACAGAC---GAGCACGTGA--TCAGCGTTGCCAATCGTAAATTACATC----CGTGTGCCGT---------------------------------------ACC--TAA--AA-CTTC--ATACCACCGGTGTGC-----------------------------CA-ATCAACT--AAAGTTTGTGTGTTTCTTTTAGCGATCAAATATCAAATTCTTGGATTACCACCACACTTCACTTA--GTG--ACCAGTTG---
droFic1 scf7180000454066:2109175-2109434 + GTG----------TTGAA------------------------TA-CGCGCTAGA-----GTAGAAAGCGATCTT--ACGG-ATCGA-CCG--AATCGGTAAAGCAT-AACAAGCCATCG---------------AAATTAACCGAC---GAGCACGTGA--TCAGCGTCTCAAGTT-TAAACCAAAAA----CCAGTGCCGG---------------------------------------ACC--CAATAAA-CTTT--ACATGATCGGTGTGCCGCCAAACTTCAAACAGA------A-----A-GTCAACT--AAAGTTTGTGTGTTTCTTTTAGAGATCAAAAACCAAT-CCTTGGAT-ATTACCCCGCTTCAATTT--GAA--ACAAGTTG---
droKik1 scf7180000302476:1860471-1860732 - GTG----------TTGCA------------------------CATCGCGGTAGA-----GTAGAAAGCGATCTTACAAG--TTCCCCCGG--AATCGGTAACGCCA-AAGACAACAACA-----AATAATACTCTAATTAACGGACGCAGAGCACGTGACACTAGCGGGCGAATTGATCCGTTT---------------------------AAAAACTG-TTCTCAAAAGG----------ACG--ACA-------CG---ATCCTTCGGTGTGA------------------------AAATCCT-GGCGACTAAAAAGATTGTGTGTTTCTTGCAGCGACCATAAACCAAT-TCTTGGATT---ACCCCGCTCC-CCCA--GAG--A-CAGACG---
droAna3 scaffold_13266:7552512-7552780 - GTG----------TTGAA------------------------CA-CGCGGTAGA------AACCAAGTG----C--TAGAG-TCGA-CGGAAAATCGGTAAATCAATCACAAGCCAGTG--CTGACCGAGC--GGATTTAA----C---GAGCACGTGA--TCAGCGCACTAATTAA-AACT--------------------AATTTATTAAAAAACCC-TAATTAAAAAGTCTATGCCGGACACTAAA--AATCCCC--CAACCAACAACGTGA------------------------AA--TCT-ATCCACT--TAAGTTTGTGTGTTTCTTTTAGAGATTAA-AACCAAA-ACTAGGATT---AATACTCTTCATATA--GAG--C-CTGTTG---
droBip1 scf7180000396384:361168-361436 - GTG----------TTGAA------------------------CA-CGCGGTAGA------AATCAAGTG----C--AAGAG-TCGA-CGGAAAATCGGTAAATCAATCACAAGTCAGCGAGCTGAGCGAGC--GGATTTAA----C---GAGCACGTGA--TCAGCGCACTAATTAA-AACT--------------------AATTTATTAATAAAT--CTAATTTAAAAATCTATGCCGGACACTAAA--AA-CCCC--CAAACAACAACGTGA------------------------AA--TCC-ATCCACT--AAAGTTTGTGTGTTTCTTTTAGCGAATAA-AACTAAA-ACTAGGATT---AATACTCTTCCCATA--GAG--C-CTGTTG---
dp5 3:14927812-14928116 - GTG----------TTGATCGCATACTAACAGGAATATACACACA-CGCGGTAGA------TAG--AGCG----C--ACGAG-TCAA-CGA--AATCGGTAAAGCTGAAACAAGTTAACA--CCAATTAAGC--AGAATTAACGGCC--AGGGCACGTGA--TTAGCCTTTGAATTCGTAGAAAACAAAATCG----------GACTTAATCAAAAATATCAAATATAA---ACTCTGCCGGAAA--GAG--AA-CTCT-CTA-GGTGCGGTG--GC-----------------TAGCGT------ATCTCCACT--AAAGTTTGTGTGTTTCTTTCAGCGA--AAATACTAAT-TCTTGGATT---ACTCCACTTCAATTTTCGAG----CCGTAGCCA
droPer2 scaffold_4:4123781-4124083 + GTG----------TTGATCGCATACTAACAGGAATATACA--CA-CGCGGTAGA------TAG--AGCG----C--ACGAG-TCAA-CGA--AATCGGTAAAGCTGAAACAAGTTAACA--CCAATTAAGC--AGAATTAACGGCC--AGGGCACGTGA--ACAGCCTTTGAATTCGTGGAAAACAAAATCG----------GACTTAATCAAAAATATCAAATATAA---ACTCTGCCGGAAA--GAG--AA-CTCT-CTA-GGTGCGGTG--GC-----------------TAGCGT------ATCTCCACT--AAAGTTTGTGTGTTTCTTTCAGCGA--AAATACTAAT-TCTTGGATT---ACTCCACTTCAATTTTTGAG----CCGTAGCCA
droVir3 scaffold_12875:19185690-19185760 + A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--AACGTTTGTGTGTTTATTTTAGCGATCAT--ATTACA-ATTTGGATT---ACTTCGCTTCAT-TC--GAGAGCAACGT-----

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GTG----------TTGAA------------------------TA-CGCGCTAAA-----CTAGAAAGCGATCCC--ACG--ATCAA-TCG--ACTCGGTAAAGCAA-AACAAGCCATCG---------------AAATCAACAGAC---GAGCACGTGA--TTAGCGTCCCAAGTCGTAAAGCATAGA----ATAGTGCCGA---------------------------------------ATT--GA-------TTA--TAGCAATCGTTGTGTCGGC------------------CA------A-ATCCAAT--AAAGTTTGTGTGTTTCTTCCAGCGATCAAAAACCAAT-ATTTGGATT---AACCCGCTTCACTTT--GAG--AAAAGTTG---SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................AA-----CTAGAAAGCGATCCC--ACG--AT............................................................................................................................................................................................................................................................................................................................2217.00770000000000000000
.....................................................A-----CTAGAAAGCGATCCC--ACG--AT............................................................................................................................................................................................................................................................................................................................2117.00761000000000000000
...........................................A-CGCGCTAAA-----CTAGAAAGC...........................................................................................................................................................................................................................................................................................................................................1914.00430000000000100000
.......................................................................CCC--ACG--ATCAA-TCG--ACTCGGTAAAG........................................................................................................................................................................................................................................................................................................2513.00321000000000000000
.....................................................................ATCCC--ACG--ATCAA-TCG--ACT................................................................................................................................................................................................................................................................................................................1912.00220000000000000000
...........................................................................................................................................................................................................................................................................CGTTGTGTCGGC------------------CA------A-ATCCAAT--AAAGTT.............................................................................2812.00201100000000000000
....................................................AA-----CTAGAAAGCGATCCC--A..................................................................................................................................................................................................................................................................................................................................1812.00201000000001000000
................................................................................................................................................................................................................................................................TA--TAGCAATCGTTGTGTC...........................................................................................................................1812.00200200000000000000
...........................................................................................................................................................GTGA--TTAGCGTCCCAAGTCGTAAAGC........................................................................................................................................................................................................................2612.00201010000000000000
......................................................................TCCC--ACG--ATCAA-TCG--ACTCGGTAAAG........................................................................................................................................................................................................................................................................................................2612.00220000000000000000
.....................................................................ATCCC--ACG--ATCAA-TCG--AC.................................................................................................................................................................................................................................................................................................................1812.00201100000000000000
..................................................................................................................CATCG---------------AAATCAACAGAC---G.........................................................................................................................................................................................................................................................1812.00200200000000000000
................................................GCTAAA-----CTAGAAAGCGATCC......................................................................................................................................................................................................................................................................................................................................2012.00220000000000000000
...........................................................................................................................................................................................................................................................................CGTTGTGTCGGC------------------CA------A-ATCC........................................................................................1912.00202000000000000000
.................................................................................................................CCATCG---------------AAATCAACAGAC---G.........................................................................................................................................................................................................................................................1912.00220000000000000000
...........................................................CTAGAAAGCGATCCC--ACG--AT............................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
......................................................................TCCC--ACG--ATCAA-TCG--ACT................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.............................................CGCGCTAAA-----CTAGAAAGCG..........................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
..G----------TTGAA------------------------TA-CGCGCTAAA-----CT..................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.............................................CGCGCTAAA-----CTAGAAAGC...........................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
..G----------TTGAA------------------------TA-CGCGCTAAA-----CTAG................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
...................................................AAA-----CTAGAAAGCGATCCC--ACG--ATCA..........................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
.......................................................................................................................................................................................................................................................A-------TTA--TAGCAATCGTTGTGTCGGC------------------CA------..............................................................................................2511.00101000000000000000
...........................................A-CGCGCTAAA-----CTAGAAAGCG..........................................................................................................................................................................................................................................................................................................................................2011.00100000100000000000
....................................................................GATCCC--ACG--ATCAA-TCG--ACTCGGTAAAG........................................................................................................................................................................................................................................................................................................2811.00110000000000000000
...................................................................................................................ATCG---------------AAATCAACAGAC---GA........................................................................................................................................................................................................................................................1811.00110000000000000000
.....................................................................ATCCC--ACG--ATCAA-TCG--ACTCGGTAAAG........................................................................................................................................................................................................................................................................................................2711.00101000000000000000
.....................................................................................................AGCAA-AACAAGCCATCG---------------AAATCAACAG...............................................................................................................................................................................................................................................................2711.00110000000000000000
.................................................................................................................................................................................................................................................................................GTCGGC------------------CA------A-ATCCAAT--AAAGT..............................................................................2111.00100100000000000000
........................................................................................CG--ACTCGGTAAAGCAA-AACAAGCCAT..........................................................................................................................................................................................................................................................................................2611.00100010000000000000
..................................................................................................................CATCG---------------AAATCAACAGAC---GA........................................................................................................................................................................................................................................................1911.00101000000000000000
.......................................................................................................................................................................................ATAGA----ATAGTGCCGA---------------------------------------ATT--GA-------TT..............................................................................................................................................2211.00101000000000000000
.................A------------------------TA-CGCGCTAAA-----CTAGAAAGC...........................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
...........................................A-CGCGCTAAA-----CTAGAAAG............................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
.................................................................................................................................................................................................................................................................................................................................TTGTGTGTTTCTTCCAGCGATCAA......................................................2411.00100010000000000000
.........................................................................................................A-AACAAGCCATCG---------------AAATCAACAGAC---..........................................................................................................................................................................................................................................................2511.00101000000000000000
.....................................................A-----CTAGAAAGCGATCCC--AC.................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................AT-ATTTGGATT---AACCCGCTTCACTTT--GA..............2811.00100010000000000000
......................................................................................................................................................................GTCCCAAGTCGTAAAGCATAGA----ATAG...........................................................................................................................................................................................................2611.00100010000000000000
...............................................................................................................................................................................................................................................................................GTGTCGGC------------------CA------A-ATCCAAT--AAAGTTT............................................................................2511.00100000001000000000
.............................................................................................................................................................................................................................................................................................................................................TCCAGCGATCAAAAACCA................................................1811.00100000001000000000
...............GAA------------------------TA-CGCGCTAAA-----CTAGAAAGC...........................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
.....................................................A-----CTAGAAAGCGATCCC--ACG--AC............................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
...............................................................................................................................................................................................................................................................TTA--TAGCAATCGTTGTGTCGGC------------------C.....................................................................................................2311.00110000000000000000
.........................................................................C--ACG--ATCAA-TCG--ACTCGG.............................................................................................................................................................................................................................................................................................................1811.00110000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TT---AACCCGCTTCACTTT--GA..............1911.00100001000000000000
..................................................................................................................................................................................................................................................TT--GA-------TTA--TAGCAATCGTTGTA.............................................................................................................................2111.00100000000001000000
.................................................................................ATCAA-TCG--ACTCGGTAAAG........................................................................................................................................................................................................................................................................................................1911.00110000000000000000
.......................................................................................................................................................................................................................................................A-------TTA--TAGCAATCGTTGTGTCGGC------------------CA------A-............................................................................................2611.00100100000000000000
.............................................................AGAAAGCGATCCC--ACG--AT............................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.....................................................A-----CTAGAAAGCGATCCC--ACG--ATCAA-A.......................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
................................................................................................................................................................................................................................................................TA--TAGCAATCGTTGTGTCGGC------------------......................................................................................................2111.00101000000000000000
................................................................................................................................................................................................ATAGTGCCGA---------------------------------------ATT--GA-------TTA--T..........................................................................................................................................1911.00100100000000000000
................................................GCTAAA-----CTAGAAAGCGATCCC--A..................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
.....................................................A-----CTAGAAAGCGATCCC--ACG--ATCAA-TCG--ACT................................................................................................................................................................................................................................................................................................................3011.00100000001000000000
.......................................................................................TCG--ACTCGGTAAAGCAA-AACAAGC.............................................................................................................................................................................................................................................................................................2411.00110000000000000000
.....................................................................................A-TCG--ACTCGGTAAAGCAA-AAC.................................................................................................................................................................................................................................................................................................2111.00100000100000000000
..G----------TTGAA------------------------TA-CGCGCTAAA-----CTAGAAAGC...........................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
................................................................................................................................................................................................................................................................TA--TAGCAATCGTTGTGTCGGC------------------CA------A-ATCC........................................................................................2811.00100100000000000000
................................................................AAGCGATCCC--ACG--ATCAA-T.......................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
.................................................CTAAA-----CTAGAAAGCGATCCC--...................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
....................................................................GATCCC--ACG--ATCAA-TCG--ACTCG..............................................................................................................................................................................................................................................................................................................2211.00110000000000000000
...........................................................................................................................................................................................................................................................................CGTTGTGTCGGC------------------CA------A-ATCCAAT--AAAGG..............................................................................2711.00101000000000000000
.....................................................................................................................................................................................................................................................................AGCAATCGTTGTGTCGGC------------------CA------A-ATCC........................................................................................2511.00100010000000000000
..........................................................................................................................................................................CAAGTCGTAAAGCATAGA----ATAGTGCCG......................................................................................................................................................................................................2711.00100010000000000000
......................................................................TCCC--ACG--ATCAA-TCG--ACTCGC.............................................................................................................................................................................................................................................................................................................2111.00100100000000000000
....................................................................................AA-TCG--ACTCGGTAAAGCAA-AACAAGCC............................................................................................................................................................................................................................................................................................2711.00100010000000000000
........................................................................CC--ACG--ATCAA-TCG--ACTCG..............................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................CCAAT--AAAGTTTGTGTGT......................................................................1820.50100000000001000000
droSec2
GTG----------TTGAA------------------------TA-CGCGCTAGA-----CTAGAAAGCGATCCC--ACG--ATCAA-TCG--ACTCGGTAAAGCAA-AACAAGCCATAG---------------AAATCATCAGAC---GAGCACGTGA--TTAGCGTCCCAAGTCGTAAAGCATAGA----AAAGTGCCGA---------------------------------------ATT--GA-------TTA--TAGCAATCGTAGTGTCGGC------------------CA------A-ATCCAAT--AAAGTTTGTGTGTTTCTTCCAGCGATCAAAAACCAAT-ATTTGGATT---ACCCCGCTTCACTTT--GAG--AAAAGTTG---SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................A------------------------TA-CGCGCTAGA-----CTAGAAAGC...........................................................................................................................................................................................................................................................................................................................................2118.0080350
................AA------------------------TA-CGCGCTAGA-----CTAGAAAGC...........................................................................................................................................................................................................................................................................................................................................2213.0030210
...........................................................CTAGAAAGCGATCCC--ACG--ATCAA-T.......................................................................................................................................................................................................................................................................................................................2412.0022000
....................................................GA-----CTAGAAAGCGATCCC--ACG--..............................................................................................................................................................................................................................................................................................................................2012.0020011
.............................................CGCGCTAGA-----CTAGAAAGCG..........................................................................................................................................................................................................................................................................................................................................1912.0020011
...............GAA------------------------TA-CGCGCTAGA-----CTAGAAAGC...........................................................................................................................................................................................................................................................................................................................................2312.0020200
.......................................................................................................................................................................................ATAGA----AAAGTGCCGA---------------------------------------ATT--GA-------T...............................................................................................................................................2112.0020110
............................................................................................................................................................................AGTCGTAAAGCATAGA----AAAGTGCC.......................................................................................................................................................................................................2411.0010010
..G----------TTGAA------------------------TA-CGCGCTAGA-----CTAGAAA.............................................................................................................................................................................................................................................................................................................................................2411.0010010
...........................................A-CGCGCTAGA-----CTAGAAAG............................................................................................................................................................................................................................................................................................................................................1811.0011000
..................................................................................................................................................................................................................................................................................................................................................................ATTTGGATT---ACCCCGCTTCACT....................2211.0010100
....................................................GA-----CTAGAAAGCGATCCC--ACG--ATCAA-T.......................................................................................................................................................................................................................................................................................................................2611.0011000
..........................................TA-CGCGCTAGA-----CTAGAAAGC...........................................................................................................................................................................................................................................................................................................................................2011.0011000
.............................................................................................................................................................................................................................................................................................................................................................CAAT-ATTTGGATT---ACCCCGCTTCACT....................2611.0010010
.............................................................AGAAAGCGATCCC--ACG--AT............................................................................................................................................................................................................................................................................................................................1811.0010001
...............................................................................................................AGCCATAG---------------AAATCATCAGAC---GAGCA.....................................................................................................................................................................................................................................................2511.0011000
....................................................................GATCCC--ACG--ATCAA-TCG--ACTCGCG............................................................................................................................................................................................................................................................................................................2411.0010100
...........................................................................................................................................................................................................................................................................CGTAGTGTCGGC------------------CA------A-ATCCAAT--AAAG...............................................................................2611.0010100
..........................................TA-CGCGCTAGA-----CTAGAAAGCGA.........................................................................................................................................................................................................................................................................................................................................2211.0011000
............................................................TAGAAAGCGATCCC--ACG--ATC...........................................................................................................................................................................................................................................................................................................................2011.0010001
.........................................................................................................................................................................................................A---------------------------------------ATT--GA-------TTA--TAGCAATCGTAGTGTCGGC------------------......................................................................................................2811.0010100
.............................................................................................CTCGGTAAAGCAA-AACAAGC.............................................................................................................................................................................................................................................................................................2011.0011000
................................................................................................................................................................................................................................................................TA--TAGCAATCGTAGTGTCGGC------------------......................................................................................................2111.0010010
.............................................................AGAAAGCGATCCC--ACG--ATCA..........................................................................................................................................................................................................................................................................................................................2011.0011000
...............................................CGCTAGA-----CTAGAAAGCGATCCC--A..................................................................................................................................................................................................................................................................................................................................2311.0010100
....................................................GA-----CTAGAAAGCGATCCC--AC.................................................................................................................................................................................................................................................................................................................................1911.0010010
...................................................AGA-----CTAGAAAGCGATCCC--ACG--AT............................................................................................................................................................................................................................................................................................................................2311.0010100
..........................................................................................................................................CATCAGAC---GAGCACGTGA--TTAGC.........................................................................................................................................................................................................................................2311.0010100
.....................................................................................................................................................................CGTCCCAAGTCGTAAAGC........................................................................................................................................................................................................................1811.0010010
....................................................................GATCCC--ACG--ATCAA-TCG--ACTCGC.............................................................................................................................................................................................................................................................................................................2311.0011000
...............GAA------------------------TA-CGCGCTAGA-----CTAGAAAGCGAT........................................................................................................................................................................................................................................................................................................................................2611.0010100
.....................................................................ATCCC--ACG--ATCAA-TCG--ACTCGC.............................................................................................................................................................................................................................................................................................................2211.0011000
.....................................................A-----CTAGAAAGCGATCCC--ACG--AT............................................................................................................................................................................................................................................................................................................................2111.0010100
.........................................................................................................................................................................................................................................................................ATCGTAGTGTCGGC------------------CA------A-ATCC........................................................................................2111.0010100
...................................................AGA-----CTAGAAAGCGATCCC--ACG--ATCAA-T.......................................................................................................................................................................................................................................................................................................................2711.0010001
...................................................................................CAA-TCG--ACTCGGTAAAGCAA-AACA................................................................................................................................................................................................................................................................................................2411.0010010
.......................................................................................................................................................................................ATAGA----AAAGTGCCGA---------------------------------------ATT--GA-------TT..............................................................................................................................................2211.0010010
............................................................................................................................................................................................................................................................................................................................AAAGTTTGTGTGTTTCTTCCAG.............................................................2211.0010010
...........................................................................................................................................................GTGA--TTAGCGTCCCAAGTCGTAAAGC........................................................................................................................................................................................................................2611.0010100
.................................................................................................................................................................................................................................................................A--TAGCAATCGTAGTGTCGGC------------------......................................................................................................2011.0010010
..G----------TTGAA------------------------TA-CGCGCTAGA-----CTAGAAAGC...........................................................................................................................................................................................................................................................................................................................................2611.0010010
....................................................GA-----CTAGAAAGCGATCCC--ACG--ATCA..........................................................................................................................................................................................................................................................................................................................2411.0011000
..G----------TTGAA------------------------TA-CGCGCTAGA-----CTAG................................................................................................................................................................................................................................................................................................................................................2111.0010100
........................................................................................................................................................................CCCAAGTCGTAAAGCATAGA----AAAGT..........................................................................................................................................................................................................2511.0010100
..............................................................................................................................................AGAC---GAGCACGTGA--TTAGC.........................................................................................................................................................................................................................................1911.0010100
........................................................................................................................................................................................................................................................................................................................AT--AAAGTTTGTGTGTTTCTTCCAG.............................................................2411.0010010
.............................................CGCGCTAGA-----CTAGAAAGCGATCC......................................................................................................................................................................................................................................................................................................................................2311.0011000
...........................................................................................................................................................................................................................................................................CGTAGTGTCGGC------------------CA------A-ATCC........................................................................................1911.0011000
..............TGAA------------------------TA-CGCGCTAGA-----CTAGAAAGCG..........................................................................................................................................................................................................................................................................................................................................2511.0010100
.......................................................................................................................................................................................ATAGA----AAAGTGCCGA---------------------------------------ATT--GA-------TTA--TA.........................................................................................................................................2511.0010010
dm3
GTG----------TTGAA------------------------TA-CGCGCTAGA-----CTAGAAAGCGATCCC--ACG--ATCAA-CCG--ACTCGGTAAAGCAA-AACAAGCCATCG---------------AAATCAACAGGC---GAGCACGTGA--TTAGCGTCCCAAGCCATAAAGCATAGA----AAAGTGCCGA---------------------------------------ATT--GAAC-CA-CTTT--CAGCAATCGTAGTGTCGGC------------------CA------A-ATCCAAT--AAAGTTTGTGTGTTTCTTTCAGCGATCAAAAACCAAT-ATTTGGATT---ACCCTGCTTCACTTT--GAG--AAAAGTTG---SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................A-CGCGCTAGA-----CTAGAAAG............................................................................................................................................................................................................................................................................................................................................181108.001080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000002500400001000000000000000000000000000000000000000002000000000000000000000000000000002000000000000000000000122001100000000000500000000001010000000020013340006844310000000001130500000000900301000000010001100200000000001027000
.............................................CGCGCTAGA-----CTAGAAAGC...........................................................................................................................................................................................................................................................................................................................................18153.00530000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000001000000100000100000000000000000100000420012230009142100000000000020100001000500100000000100000000000000000000011000
...........................................A-CGCGCTAGA-----CTAGAAAGC...........................................................................................................................................................................................................................................................................................................................................19140.00400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000100000001000000000000000001000000000210220000001002001000000000000020200000000100000010000000101221201201000000002300
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...................................................................................................................................................................................................................................................................................................................................................................TTTGGATT---ACCCTGCTTCACTTT--GAG--A..........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................TTGTGTGTTTCTTTCAGCGATC........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
................................................................................................................................................................................................................................................................................................................................................................T-ATTTGGATT---ACCCTGCTTCACTTT--GA..............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TGTGTTTCTTTCAGCGATCA.......................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.........................................................................C--ACG--ATCAA-CCG--ACTCGGTAAAGC.......................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................AAGCGATCCC--ACG--ATCAA-C.......................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................ATAGA----AAAGTGCCGA---------------------------------------ATT--.........................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..............TGAA------------------------TA-CGCGCTAGA-----CTAGAAA.............................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.........................................................................C--ACG--ATCAA-CCG--ACTCGGTAAAGCAA-A...................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................CAGGC---GAGCACGTGA--TTAGC.........................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................CGCGCTAGA-----CTAGAAAGCGATC.......................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.................................................CTAGA-----CTAGAAAGCGATCCC--ACG--ATCAA-C.......................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................TCG---------------AAATCAACAGGC---GAGC......................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
..............................................GCGCTAGA-----CTAGAAAGCGATC.......................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
................................................GCTAGA-----CTAGAAAGCGATCCC--ACG--A.............................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................CGTGA--TTAGCGTCCCAAGCCATA............................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................AGTTTGTGTGTTTCTTTC...............................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
.............................................................................................CTCGGTAAAGCAA-AACAAGCCA...........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................CCC--ACG--ATCAA-CCG--ACTCGG.............................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................ATCG---------------AAATCAACAGGC---GAG.......................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TTGAA------------------------TA-CGCGCTAGA-----CTAGAAAG............................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
....................................................................GATCCC--ACG--ATCAA-CCG--ACTCGGTAA..........................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GTG----------TTGAA------------------------TA-CGCGCTAGA-----ATAGAAAGCGATCCC--ACG--ATCAG-CCG--ACTCGGTAAAGCAA-AATAAGCCAGCG---------------AAATCAACAGCC---GAGCACGTGA--TTAGCGTCTCAAGTCGTAAAGCATAAA----ACAGTGCGGA---------------------------------------ACT--GAAG-CA-CCTT--TACCAATTGCAGTGTCGGC------------------CA------AATACCAAT--AAAGTTTGTGTGTTTCTTCCAGCGATCAAAAACCAAT-ATTTGGATT---ACTCCGCTTCACTTA--GAG--AAAAGTTG---SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................A------------------------TA-CGCGCTAGA-----ATAGAAAGC...........................................................................................................................................................................................................................................................................................................................................2117.0070000520
....................................................................GATCCC--ACG--ATCAG-CCG--ACTCGC.............................................................................................................................................................................................................................................................................................................2314.0042101000
...............GAA------------------------TA-CGCGCTAGA-----ATAGAAAGC...........................................................................................................................................................................................................................................................................................................................................2314.0042100100
.................A------------------------TA-CGCGCTAGA-----ATAGAAAG............................................................................................................................................................................................................................................................................................................................................2012.0020100100
............................................................................................................................................................................................................................................................................................................................AAAGTTTGTGTGTTTCTTCCAGC............................................................2311.0010000100
............................................................................................................................................ACAGCC---GAGCACGTGA--TTAGC.........................................................................................................................................................................................................................................2111.0010000100
.............................................................................................................................................................................................................................................................................................................................AAGTTTGTGTGTTTCTTCCAG.............................................................2111.0010000010
..........................................................................................................................................................................................................................................................................................................................................................AACCAAT-ATTTGGATT---ACT..............................1911.0010000010
..........................................................................................................................................................................................................................................................................................................................................................................T---ACTCCGCTTCACTTA--GAG--AAAAGT.....2511.0010000100
..............................................................................................................................................................................................................................................................CCTT--TACCAATTGCAGTGTCGGC------------------CA------A.............................................................................................2611.0010000010
...........................................................................................................................................AACAGCC---GAGCACGTGA--TTAGC.........................................................................................................................................................................................................................................2211.0010000100
.TG----------TTGAA------------------------TA-CGCGCTAGA-----ATAGAA..............................................................................................................................................................................................................................................................................................................................................2411.0010000100
......................................................................................................................G---------------AAATCAACAGCC---GAGCACGT..................................................................................................................................................................................................................................................2111.0010000010
...................................................................................................................................................................................................................................................T--GAAG-CA-CCTT--TACCAATTGCAGTGTC...........................................................................................................................2711.0010000100
...............................................................................................................................................................................................................................................................................................................................................................AT-ATTTGGATT---ACTCCGCTT........................2011.0011000000
..............................................................................................................AAGCCAGCG---------------AAATCAACAGCC---GA........................................................................................................................................................................................................................................................2311.0010000100
.................................................CTAGA-----ATAGAAAGCGATCCC--AC.................................................................................................................................................................................................................................................................................................................................2211.0011000000
..............TGAA------------------------TA-CGCGCTAGA-----ATAGAAAGC...........................................................................................................................................................................................................................................................................................................................................2411.0010000100
.................A------------------------TA-CGCGCTAGA-----ATAGAAAGCG..........................................................................................................................................................................................................................................................................................................................................2211.0010001000
................................................................................................................................................................................................................................................................................................................................................................T-ATTTGGATT---ACTCCGCTTCACTT...................2411.0010000010
........................................................................................................................................................................................................GA---------------------------------------ACT--GAAG-CA-CCTT--TACC.......................................................................................................................................1911.0010000010
................................................................................................................................................................................................................................................................................................................................................................T-ATTTGGATT---ACTCCGCTTCACT....................2311.0010000100
........................................................................................................................................................................................................................................................................................................................................................................ATT---ACTCCGCTTCACTTA--GA..............2011.0010001000
...............GAA------------------------TA-CGCGCTAGA-----ATAGA...............................................................................................................................................................................................................................................................................................................................................1911.0010100000
...................................................AGA-----ATAGAAAGCGATCCC--ACG--..............................................................................................................................................................................................................................................................................................................................2111.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................CTCCGCTTCACTTA--GAG--AAAAGT.....2311.0010000100
........................................................................................................................................................................................................................................................................AATTGCAGTGTCGGC------------------CA------AATACCA.......................................................................................2411.0011000000
......................................................................................................................G---------------AAATCAACAGCC---GAGCACGTGA--TTAGC.........................................................................................................................................................................................................................................2811.0010000100
..G----------TTGAA------------------------TA-CGCGCTAGA-----ATAGAAAGC...........................................................................................................................................................................................................................................................................................................................................2611.0010100000
...........................................................................................................................................AACAGCC---GAGCACGTGA--TTAGCGTCT.....................................................................................................................................................................................................................................2611.0010000100
..............TGAA------------------------TA-CGCGCTAGA-----ATAGAAAG............................................................................................................................................................................................................................................................................................................................................2311.0010010000
...............GAA------------------------TA-CGCGCTAGA-----ATAGAA..............................................................................................................................................................................................................................................................................................................................................2011.0011000000
........................................................................................................................................ATCAACAGCC---GAGCACGT..................................................................................................................................................................................................................................................1811.0010001000
...............GAA------------------------TA-CGCGCTAGA-----ATAGAAAG............................................................................................................................................................................................................................................................................................................................................2211.0010000010
...................................................................................................................AGCG---------------AAATCAACAGCC---GAGCACGTG.................................................................................................................................................................................................................................................2511.0010000010
............................................................................................................................................................................................................................................................A-CCTT--TACCAATTGCAGTGTCGG.........................................................................................................................2311.0010000100
...........................................................................................................................................AACAGCC---GAGCACGTGA--TTAGCGTCTCA...................................................................................................................................................................................................................................2811.0010000100
...........................................................ATAGAAAGCGATCCC--ACG--..............................................................................................................................................................................................................................................................................................................................1811.0010000010
...............................................................AAAGCGATCCC--ACG--ATCAG-CCG--ACTCGC.............................................................................................................................................................................................................................................................................................................2811.0010100000
........................................................................................................................................................................................................................................................................................................................AT--AAAGTTTGTGTGTTTCTTCCAGC............................................................2511.0010000100
.............TTGAA------------------------TA-CGCGCTAGA-----ATAGAAAGC...........................................................................................................................................................................................................................................................................................................................................2511.0010000100
........................................................................CC--ACG--ATCAG-CCG--ACTCG..............................................................................................................................................................................................................................................................................................................1811.0010010000
.....................................................................................................................................................GAGCACGTGA--TTAGCGTCT.....................................................................................................................................................................................................................................1911.0010000100
.....................................................................ATCCC--ACG--ATCAG-CCG--ACT................................................................................................................................................................................................................................................................................................................1911.0010010000
...............................................................................................CGGTAAAGCAA-AATAAGCC............................................................................................................................................................................................................................................................................................1911.0010000100
......................................................................................................................................................................................................................................................................CCAATTGCAGTGTCGGC------------------CA------A.............................................................................................2011.0010100000
...................................................................................................................AGCG---------------AAATCAACAGCC---GAGC......................................................................................................................................................................................................................................................2011.0010100000
.............................................................AGAAAGCGATCCC--ACG--ATCAG-CCG--ACT................................................................................................................................................................................................................................................................................................................2711.0011000000
............................................................................................................................................................................................................................................................................................................................................TTCCAGCGATCAAAAACCA................................................1911.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................TT---ACTCCGCTTCACTTA--GAG--AAAA.......2411.0010000100
............................................................................................................................................ACAGCC---GAGCACGTGA--TTAGCGTCT.....................................................................................................................................................................................................................................2511.0010000100
.....................................................................................................................................................................................................................................................................ACCAATTGCAGTGTCGGC------------------CA------AATACCA.......................................................................................2711.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................ACTCCGCTTCACTTA--GAG--AAAAGT.....2411.0010000100
..............................................................GAAAGCGATCCC--ACG--ATC...........................................................................................................................................................................................................................................................................................................................1811.0010000010
........................................................................................................................................ATCAACAGCC---GAGCACGTGA--TTAGCGTC......................................................................................................................................................................................................................................2811.0010000100
................AA------------------------TA-CGCGCTAGA-----ATAGAAAGC...........................................................................................................................................................................................................................................................................................................................................2211.0010000100
...........................................A-CGCGCTAGA-----ATAGAAAGC...........................................................................................................................................................................................................................................................................................................................................1911.0010001000
..G----------TTGAA------------------------TA-CGCGCTAGA-----ATA.................................................................................................................................................................................................................................................................................................................................................2011.0010000100
...............GAA------------------------TA-CGCGCTAGA-----ATAG................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.......................................................................................................................................AATCAACAGCC---GAGCACGTGA--..............................................................................................................................................................................................................................................2111.0010000100
..........................................TA-CGCGCTAGA-----ATAGAAAGC...........................................................................................................................................................................................................................................................................................................................................2011.0010000100
....................................................................GATCCC--ACG--ATCAG-CCG--ACTCGGTAAA.........................................................................................................................................................................................................................................................................................................2711.0011000000
...........................................................................................................................................................GTGA--TTAGCGTCTCAAGTCGTAAAGC........................................................................................................................................................................................................................2611.0010000010
...................................................................................................................................................................................................................................................................................................................................................................................GCTTCACTTA--GAG--AAAAGT.....1911.0010010000
..................................................................................................................................................................................................AGTGCGGA---------------------------------------ACT--GAAG-CA-CCTT--...........................................................................................................................................2111.0011000000
.................A------------------------TA-CGCGCTAGA-----ATAGAAAGCGATC.......................................................................................................................................................................................................................................................................................................................................2511.0010000100
......................................................................................................................................................................GTCTCAAGTCGTAAAGCATAA....................................................................................................................................................................................................................2111.0010000100
droYak3
GTG----------TTGAA------------------------TA-CGCGCTAGG-----CTAGAAAGCGATCCC--ACG--ATCAA-GCG--ACTCGGTAAAGCAA-AACAAGCCATCG---------------AAATCAACGGAC---GAGCACGTGA--TTAGCGTCTCAAGTCGAAGAGCATAAAA---TTAGTGCCGA---------------------------------------ATT--GAAA-CA-CTTT--TAGCAATCGTAGTGTCGGC------------------CA------AAATCCAAT--AAAGTTTGTGTGTTTCTTCCAGCGATCAAAAGCCAAT-ATTTGGATT---ACTCCGCTTCACTCA--GAG--AAAAGTTG---SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..G----------TTGAA------------------------TA-CGCGCTAGG-----CTAGAAAGC...........................................................................................................................................................................................................................................................................................................................................2615.00502100020000
.................................................................................................GTAAAGCAA-AACAAGCCATC.........................................................................................................................................................................................................................................................................................2015.00500000000005
...............GAA------------------------TA-CGCGCTAGG-----CTAGAAAGC...........................................................................................................................................................................................................................................................................................................................................2314.00401300000000
.............................................................AGAAAGCGATCCC--ACG--AT............................................................................................................................................................................................................................................................................................................................1813.00320100000000
.................A------------------------TA-CGCGCTAGG-----CTAGAAAGC...........................................................................................................................................................................................................................................................................................................................................2113.00300100020000
.............................................................................................................................................................GA--TTAGCGTCTCAAGTCGAAGAGC........................................................................................................................................................................................................................2412.00200100010000
.......................................................................CCC--ACG--ATCAA-GCG--ACTCGC.............................................................................................................................................................................................................................................................................................................2012.00202000000000
..................................................................................................................................................................TAGCGTCTCAAGTCGAAGAGC........................................................................................................................................................................................................................2112.00200000020000
...............GAA------------------------TA-CGCGCTAGG-----CTAGAA..............................................................................................................................................................................................................................................................................................................................................2012.00201100000000
.................................................................................ATCAA-GCG--ACTCGGTAAAGC.......................................................................................................................................................................................................................................................................................................2012.00210000010000
..G----------TTGAA------------------------TA-CGCGCTAGG-----CTAGAAAG............................................................................................................................................................................................................................................................................................................................................2512.00200010010000
..............TGAA------------------------TA-CGCGCTAGG-----CTAGAAAGC...........................................................................................................................................................................................................................................................................................................................................2412.00200000020000
.......................................................................................................................................AATCAACGGAC---GAGCACGT..................................................................................................................................................................................................................................................1912.00200000020000
....................................................................GATCCC--ACG--ATCAA-GCG--ACT................................................................................................................................................................................................................................................................................................................2012.00200100010000
..............................................................................................................................................................A--TTAGCGTCTCAAGTCGAAGAGC........................................................................................................................................................................................................................2312.00200000020000
........................................................................................................................................ATCAACGGAC---GAGCACGTGA--TTAGCGT.......................................................................................................................................................................................................................................2711.00110000000000
............................................................TAGAAAGCGATCCC--ACG--AT............................................................................................................................................................................................................................................................................................................................1911.00100000010000
.............................................................................................................................................................GA--TTAGCGTCTCAAGTCGAAGAGCAT......................................................................................................................................................................................................................2611.00100000010000
...................................................................................................................ATCG---------------AAATCAACGGAC---GAGCACGT..................................................................................................................................................................................................................................................2411.00100000010000
................................................................................................................GCCATCG---------------AAATCAACGGAC---GAG.......................................................................................................................................................................................................................................................2211.00100000010000
.....................................................................................................................................................................................................................................................................................................................................GTGTTTCTTCCAGCGATCAAAA....................................................2211.00101000000000
....................................................................................AA-GCG--ACTCGGTAAAGCAA-AACA................................................................................................................................................................................................................................................................................................2311.00100000010000
................................................GCTAGG-----CTAGAAAGCGATCCC--AC.................................................................................................................................................................................................................................................................................................................................2311.00100100000000
...........................................A-CGCGCTAGG-----CTAGAAAG............................................................................................................................................................................................................................................................................................................................................1811.00110000000000
....................................................................................................................................................................................................................................................................................................................................................ATCAAAAGCCAAT-ATTTGGA......................................2011.00101000000000
..............................................................................................................................................GGAC---GAGCACGTGA--TTAGC.........................................................................................................................................................................................................................................1911.00100100000000
.......................................................................................................................................AATCAACGGAC---GAGCACGTGA--T.............................................................................................................................................................................................................................................2211.00101000000000
....................................................GG-----CTAGAAAGCGATCCC--AC.................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.........................................................................................................................................TCAACGGAC---GAGCACGTGA--TTAGCGTCT.....................................................................................................................................................................................................................................2811.00100000010000
.................................................................................................................................................................................................................................................ATT--GAAA-CA-CTTT--TAGCAATCGT.................................................................................................................................2311.00101000000000
.TG----------TTGAA------------------------TA-CGCGCTAGG-----CTAGAA..............................................................................................................................................................................................................................................................................................................................................2411.00100000010000
...................................................................................CAA-GCG--ACTCGGTAAAGCA......................................................................................................................................................................................................................................................................................................1911.00100000010000
...........................................................................................................................................AACGGAC---GAGCACGTGA--TTAGCGT.......................................................................................................................................................................................................................................2411.00101000000000
..............................................................GAAAGCGATCCC--ACG--ATCAA-GCG--A..................................................................................................................................................................................................................................................................................................................2411.00101000000000
................................................................................................................GCCATCG---------------AAATCAACGGAC---GAGCAC....................................................................................................................................................................................................................................................2511.00110000000000
...............................................................................................................AGCCATCG---------------AAATCAACGGAC---GAGC......................................................................................................................................................................................................................................................2411.00110000000000
......................................................................................................................................AAATCAACGGAC---GAGCACGTG.................................................................................................................................................................................................................................................2111.00100000010000
........................................................................................................................................................................CTCAAGTCGAAGAGCATAAA...................................................................................................................................................................................................................2011.00100000010000
................................................GCTAGG-----CTAGAAAGCGATCCC--...................................................................................................................................................................................................................................................................................................................................2111.00100100000000
.................................................................AGCGATCCC--ACG--ATCAA-GCG--ACTCGGT............................................................................................................................................................................................................................................................................................................2711.00100000010000
....................................................................GATCCC--ACG--ATCAA-GCG--ACTCGGT............................................................................................................................................................................................................................................................................................................2411.00100000010000
...................................................AGG-----CTAGAAAGCGATCCC--A..................................................................................................................................................................................................................................................................................................................................1911.00100100000000
..G----------TTGAA------------------------TA-CGCGCTAGG-----CTA.................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.................A------------------------TA-CGCGCTAGG-----CTAGAAA.............................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...................................................................................................AAAGCAA-AACAAGCCATCG---------------AAAT.....................................................................................................................................................................................................................................................................2311.00101000000000
...........................................................................................................................................................................................................................................................CA-CTTT--TAGCAATCGTAGTGTCGGC------------------......................................................................................................2511.00100000010000
..............................................................GAAAGCGATCCC--ACG--ATCAA-GCG--ACT................................................................................................................................................................................................................................................................................................................2611.00100100000000
........................................................................................................AA-AACAAGCCATCG---------------AAATC....................................................................................................................................................................................................................................................................1911.00101000000000
........................................................................................................................................................................CTCAAGTCGAAGAGCATAAAA---TTAGTGC........................................................................................................................................................................................................2811.00100000010000
..................................................................................TCAA-GCG--ACTCGGTAAAGCAA-AACAAGCC............................................................................................................................................................................................................................................................................................2911.00100000010000
.............................................CGCGCTAGG-----CTAGAAAGCG..........................................................................................................................................................................................................................................................................................................................................1911.00100001000000
.................................................................................ATCAA-GCG--ACTCGGTAAAGCAA-AACA................................................................................................................................................................................................................................................................................................2611.00100000010000
................................................................AAGCGATCCC--ACG--ATCAA-GCG--ACT................................................................................................................................................................................................................................................................................................................2411.00101000000000
....................................................................GATCCC--ACG--ATCAA-GCG--ACTCG..............................................................................................................................................................................................................................................................................................................2211.00100000010000
...........................................A-CGCGCTAGG-----CTAGAAAGC...........................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...........................................................................................................................................................................................................................................................................CGTAGTGTCGGC------------------CA------AAATCCAAT--...................................................................................2311.00101000000000
......................................................................TCCC--ACG--ATCAA-GCG--ACTCG..............................................................................................................................................................................................................................................................................................................2011.00100000010000
........................................................................................................................................................CACGTGA--TTAGCGTCTCAAGTC...............................................................................................................................................................................................................................2211.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................AGCCAAT-ATTTGGATT---ACTC.............................2011.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................TTGGATT---ACTCCGCTTCACTCA--GA..............2411.00101000000000
.............................................................................................................................................................GA--TTAGCGTCTCAAGTCGAAG...........................................................................................................................................................................................................................2111.00100000010000
...................................................................................................................................................................................................................................................................................................................................................GATCAAAAGCCAAT-ATTTGG.......................................2011.00101000000000
...............................................................................................................................................GAC---GAGCACGTGA--TTAGCGTCT.....................................................................................................................................................................................................................................2211.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................ATT---ACTCCGCTTCACTCA--GAG--AAAAGT.....2711.00100000010000
................................................................AAGCGATCCC--ACG--ATCAA-GCG--ACTC...............................................................................................................................................................................................................................................................................................................2511.00100100000000
...............................................................................................................AGCCATCG---------------AAATCAACGGAC---GAGCACGTG.................................................................................................................................................................................................................................................2911.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................GCCAAT-ATTTGGATT---ACTCCGCTT........................2411.00101000000000
.....................................................................................................................................................GAGCACGTGA--TTAGCGTCT.....................................................................................................................................................................................................................................1911.00100000010000
.........................................................................................................................................................................................................................................................................................................................................TTCTTCCAGCGATCAAAAG...................................................1911.00100000010000
...................................................................................................................ATCG---------------AAATCAACGGAC---GAGCACGTG.................................................................................................................................................................................................................................................2511.00100000010000
................................................................................................................GCCATCG---------------AAATCAACGGAC---GAGC......................................................................................................................................................................................................................................................2311.00110000000000
...................................................................................CAA-GCG--ACTCGGTAAAGCAA-ACA.................................................................................................................................................................................................................................................................................................2311.00100000010000
.......................................................................................................................................AATCAACGGAC---GAGCACGTGA--TT............................................................................................................................................................................................................................................2311.00100000010000
......................................................................................................................G---------------AAATCAACGGAC---GAGCACGT..................................................................................................................................................................................................................................................2111.00100000010000
...........................................................CTAGAAAGCGATCCC--ACG--ATCAA-GCG--ACT................................................................................................................................................................................................................................................................................................................2911.00100000010000
......................................................................TCCC--ACG--ATCAA-GCG--ACT................................................................................................................................................................................................................................................................................................................1811.00100100000000
.................A------------------------TA-CGCGCTAGG-----CTAGAAAGCG..........................................................................................................................................................................................................................................................................................................................................2211.00100000010000
............................................................................................................................................................................AGTCGAAGAGCATAAAA---TTAGTGCCGA---------------------------------------..............................................................................................................................................................2711.00100000010000
............................................................................................................................................................................................................................................................................GTAGTGTCGGC------------------CA------AAATCCA.......................................................................................2011.00101000000000
...................................................................................................................ATCG---------------AAATCAACGGAC---GAGCAC....................................................................................................................................................................................................................................................2211.00110000000000
........................................................................................CG--ACTCGGTAAAGCAA-AACAAGC.............................................................................................................................................................................................................................................................................................2311.00100100000000
......................................................................TCCC--ACG--ATCAA-GCG--ACTCGC.............................................................................................................................................................................................................................................................................................................2111.00110000000000
.......................................................................................................................................................................................ATAAAA---TTAGTGCCGA---------------------------------------ATT--GAA......................................................................................................................................................2211.00100000010000
..G----------TTGAA------------------------TA-CGCGCTAGG-----CTAGA...............................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.................................................................................ATCAA-GCG--ACTCGGTAAAGCA......................................................................................................................................................................................................................................................................................................2111.00101000000000
......................................................................................................................................................................................................................................................................................................................................................CAAAAGCCAAT-ATTTGGATT---ACTCCGCTT........................2911.00101000000000
droEug1
GTG----------T-GAA------------------------AA-CGCGCTAGA-----GTAGAAAGCGATCCT--ACG--ATCAG-TCG--ATTCGGTAAAGCAA-AACAAGACAGCG---------------GAATTAACCGAC---GAGCACGTGA--TCAGCGTCTCAAGTCGTAAATAA-CTA----ACAGTGCCGG---------------------------------------AAG--GAA---A-CTTCATTTACCATCGTAGTGC-----------------------------CA-CTCCACT--AAAGTTTGTGTGTTTCTTCCAGCGATTAAAAACCAAT-TCTTGGATT---ACTCCGCTTCACTTA--GAA--ACCAGTTG---SizeHit CountTotal NormTotal
No Reads
droBia1
GTGTCAACAGGTGTTGAA------------------------TA-CGCGCTACAATAAAGAAGAAAGCGATCTTCCACG--ATCGA-ACG--ACTCGGTAAAGCCA-AACAAGCCAGCG---------------GATTTAACGGTC---GAGCACGTGA--TCAGAGTCTCAATAGATAAATTA---A----AAAGTGCCGG---------------------------------------ACG--GAA--AA-CTTT--TAGCCACCGGTGTGC-----------------------------CA-AACCACT--AAAGTTTGTGTGTTTCTTCTAGCGATCAA-AACCAAT-TCTTGGATT---ACCCCGCTTCACTTA--GAG--ACCAGTTG---SizeHit CountTotal NormTotal
No Reads
droTak1
GTG----------TTGAA------------------------TA-CGCGCTACA-----GTAGACAGCGATCCCATACG--ATCAA-TCG--ATTCGGTAAAGCAA-AACAAGCAAGCG---------------GAATTAACGAAC---GAGCACGTGA--TCAGCGTCTCAAGTCGTAAATTAAGAA----AAAGTGCCGG---------------------------------------ACC--AAA--AA-CTTG--AAACC-CCGGTGTGC-----------------------------CA-GTCCACT--AAAGTTTATGTGTTTCTTCTAGCGATCAAAAAGTCAC-TCTTGGATT---ACCCTGCTTCACTTA--GAG--ACCAGTTG---SizeHit CountTotal NormTotal
No Reads
droEle1
GTG------------GAA------------------------TA-CGCGCTAGA-----GTAGAAAGCGATCTT--ACGAG-TCAA-CCG--AATCGGTAAAGCAA-AACAAGTTAGCG---------------GAATTAACGGAC---GAGCACGTGA--TCTGCGTCGCCAGTCGTAAATGA-ATT----ATTGTGCCGA---------------------------------------ATC--GAA--AA-CTTT--AAGCCACCAGAGTGC-----------------------------CA-ATCGACT--AAAGTTTGTGTGTTTCTTTTAGCGATCAAAAATCAATATCTTGGATT---ACCTCGCTTCACTTA--AAG--ACCAGTTG---SizeHit CountTotal NormTotal
No Reads
droRho1
GAG----------TTGAA------------------------TA-CGCGCTAGA-----GTAGAAAGCGATCTT--ACGAG-TCAA-CCG--GATCGGTAAAGCAA-AACAAGCCAGCG---------------GAATTAACAGAC---GAGCACGTGA--TCAGCGTTGCCAATCGTAAATTACATC----CGTGTGCCGT---------------------------------------ACC--TAA--AA-CTTC--ATACCACCGGTGTGC-----------------------------CA-ATCAACT--AAAGTTTGTGTGTTTCTTTTAGCGATCAAATATCAAATTCTTGGATTACCACCACACTTCACTTA--GTG--ACCAGTTG---SizeHit CountTotal NormTotal
No Reads
droFic1
GTG----------TTGAA------------------------TA-CGCGCTAGA-----GTAGAAAGCGATCTT--ACGG-ATCGA-CCG--AATCGGTAAAGCAT-AACAAGCCATCG---------------AAATTAACCGAC---GAGCACGTGA--TCAGCGTCTCAAGTT-TAAACCAAAAA----CCAGTGCCGG---------------------------------------ACC--CAATAAA-CTTT--ACATGATCGGTGTGCCGCCAAACTTCAAACAGA------A-----A-GTCAACT--AAAGTTTGTGTGTTTCTTTTAGAGATCAAAAACCAAT-CCTTGGAT-ATTACCCCGCTTCAATTT--GAA--ACAAGTTG---SizeHit CountTotal NormTotal
No Reads
droKik1
GTG----------TTGCA------------------------CATCGCGGTAGA-----GTAGAAAGCGATCTTACAAG--TTCCCCCGG--AATCGGTAACGCCA-AAGACAACAACA-----AATAATACTCTAATTAACGGACGCAGAGCACGTGACACTAGCGGGCGAATTGATCCGTTT---------------------------AAAAACTG-TTCTCAAAAGG----------ACG--ACA-------CG---ATCCTTCGGTGTGA------------------------AAATCCT-GGCGACTAAAAAGATTGTGTGTTTCTTGCAGCGACCATAAACCAAT-TCTTGGATT---ACCCCGCTCC-CCCA--GAG--A-CAGACG---SizeHit CountTotal NormTotal
No Reads
droAna3
GTG----------TTGAA------------------------CA-CGCGGTAGA------AACCAAGTG----C--TAGAG-TCGA-CGGAAAATCGGTAAATCAATCACAAGCCAGTG--CTGACCGAGC--GGATTTAA----C---GAGCACGTGA--TCAGCGCACTAATTAA-AACT--------------------AATTTATTAAAAAACCC-TAATTAAAAAGTCTATGCCGGACACTAAA--AATCCCC--CAACCAACAACGTGA------------------------AA--TCT-ATCCACT--TAAGTTTGTGTGTTTCTTTTAGAGATTAA-AACCAAA-ACTAGGATT---AATACTCTTCATATA--GAG--C-CTGTTG---SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................TTTAA----C---GAGCACGTGA--TCAGC.........................................................................................................................................................................................................................................2114.004020020
....................................................................G----C--TAGAG-TCGA-CGGAAAATCGGT............................................................................................................................................................................................................................................................................................................2314.004000040
.......................................................................................................................................ATTTAA----C---GAGCACGTGA--TCAGC.........................................................................................................................................................................................................................................2214.004210010
...............GAA------------------------CA-CGCGGTAGA------AACCAAGT...........................................................................................................................................................................................................................................................................................................................................2213.003000030
...........................................................................................................................GACCGAGC--GGATTTAA----C---GAGC......................................................................................................................................................................................................................................................2113.003010020
...........................................................................................................................................AA----C---GAGCACGTGA--TCAGCGCACT....................................................................................................................................................................................................................................2312.002000002
..G----------TTGAA------------------------CA-CGCGGTAGA------AACCAAG............................................................................................................................................................................................................................................................................................................................................2412.002001010
.........................................................................................................................................TTAA----C---GAGCACGTGA--TCAGC.........................................................................................................................................................................................................................................2012.002010010
...........................................................................................................................................................................................................................................................................................................AA--TCT-ATCCACT--TAAGTTTGTGTGC......................................................................2512.002020000
...........................................................................................AAATCGGTAAATCAATCACAAGCC............................................................................................................................................................................................................................................................................................2412.002020000
....................................................................G----C--TAGAG-TCGA-CGGAAAATCGGTA...........................................................................................................................................................................................................................................................................................................2412.002100100
..............................................................................GAG-TCGA-CGGAAAATCGGT............................................................................................................................................................................................................................................................................................................1911.001100000
.................A------------------------CA-CGCGGTAGA------AACCAAGTG----C--C..................................................................................................................................................................................................................................................................................................................................2311.001010000
.....................................................................................................................................................GAGCACGTGA--TCAGCGCA......................................................................................................................................................................................................................................1811.001010000
.................................................................................................................................................C---GAGCACGTGA--TCAGCGCACTAATTAA-.............................................................................................................................................................................................................................2711.001100000
...........................................................................................................................................AA----C---GAGCACGTGA--TCAGCGCAC.....................................................................................................................................................................................................................................2211.001010000
...............GAA------------------------CA-CGCGGTAGA------AACCAAG............................................................................................................................................................................................................................................................................................................................................2111.001010000
............................................................AACCAAGTG----C--TAGAG-TCGA-CGGAAA..................................................................................................................................................................................................................................................................................................................2511.001000010
..................................................................................................................................................................................................................................................CACTAAA--AATCCCC--CAACCAA....................................................................................................................................2111.001010000
........................................................................................................AATCACAAGCCAGTG--CTGACCGAGC--GG........................................................................................................................................................................................................................................................................2711.001010000
....................................................................G----C--TAGAG-TCGA-CGGAAAATCGG.............................................................................................................................................................................................................................................................................................................2211.001000010
............................................................AACCAAGTG----C--TAGAG-TCGA-C.......................................................................................................................................................................................................................................................................................................................2011.001010000
.....................................................................................................ATCAATCACAAGCCAGTG--C.....................................................................................................................................................................................................................................................................................1911.001100000
.........................................................................................................................CTGACCGAGC--GGATTTAA----C---GAGCACGT..................................................................................................................................................................................................................................................2711.001000010
................................................................................................................................................................................................................................................................................................................................................................A-ACTAGGATT---AATACTCTTCATATA--GAG--C-.........2911.001000010
.................................................................................................GTAAATCAATCACAAGCC............................................................................................................................................................................................................................................................................................1811.001010000
.................................................................................................GTAAATCAATCACAAGCCAGTG--CT....................................................................................................................................................................................................................................................................................2411.001100000
.................................................................................................................................GC--GGATTTAA----C---GAGCACGTGA--TCAGC.........................................................................................................................................................................................................................................2611.001100000
.............................................................................AGAG-TCGA-CGGAAAATCGGT............................................................................................................................................................................................................................................................................................................2011.001001000
........................................................................................GGAAAATCGGTAAATCAATCACAA...............................................................................................................................................................................................................................................................................................2411.001000010
....................................................................................................AATCAATCACAAGCCAGT.........................................................................................................................................................................................................................................................................................1811.001001000
.............................................................ACCAAGTG----C--TAGAG-TCGA-CG......................................................................................................................................................................................................................................................................................................................2011.001000010
.............................................................................................................................................................GA--TCAGCGCACTAATTAA-AAC..........................................................................................................................................................................................................................2111.001010000
.................................................GTAGA------AACCAAGTG----C--TAGAG-T............................................................................................................................................................................................................................................................................................................................2111.001000010
.................................................................................................................................................................................................................................................................................GA------------------------AA--TCT-ATCCACT--TAAGTTTGTGT........................................................................2511.001000010
............................................................................................................................................................................................................................................................................AACGTGA------------------------AA--TCT-ATCCACT--T..................................................................................2011.001010000
........................................................................................................................................................................................................................................................................................................................................................A-AACCAAA-ACTAGGATT---AATACTCTT........................2611.001010000
.................................................GTAGA------AACCAAGTG----C--TAGAG-TC...........................................................................................................................................................................................................................................................................................................................2211.001000010
.................................................................................................................................GC--GGATTTAA----C---GAGCACGT..................................................................................................................................................................................................................................................1911.001010000
................................................GGTAGA------AACCAAGTG----C--TAGAG-TCGA-C.......................................................................................................................................................................................................................................................................................................................2611.001000010
.................................................................................................................................................................................................................................................................................GA------------------------AA--TCT-ATCCACT--TAAGTTTGTGTGT......................................................................2711.001010000
..G----------TTGAA------------------------CA-CGCGGTAGA------AACC...............................................................................................................................................................................................................................................................................................................................................2111.001010000
...................................................AGA------AACCAAGTG----C--TAGAG-TC...........................................................................................................................................................................................................................................................................................................................2011.001000010
.......................................................................................................................................................................................................................................................................................................................................................AA-AACCAAA-ACTAGGATT---AATACT...........................2411.001010000
............................................................................................................ACAAGCCAGTG--CTGACCGA..............................................................................................................................................................................................................................................................................1911.001100000
.................................................................................................................................GC--GGATTTAA----C---GAGCACGTGA--TC............................................................................................................................................................................................................................................2311.001010000
.........................................................................................................ATCACAAGCCAGTG--CTGACCGAGC--GGATT.....................................................................................................................................................................................................................................................................2911.001010000
.....................................................................................................................................................................................................................................................................................................................................................................AGGATT---AATACTCTTCATATA--GAG--C-CT.......2711.001000001
..........................................................................................................................................................................................................................................................................................................................................................AACCAAA-ACTAGGATT---AAT..............................1911.001010000
.......................................................................................................CAATCACAAGCCAGTG--CTGACC................................................................................................................................................................................................................................................................................2211.001010000
.....................................................................................................................................GGATTTAA----C---GAGCACGTGA--T.............................................................................................................................................................................................................................................2011.001010000
.....................................................................................................................................................................................................................................................................................................................................GTGTTTCTTTTAGAGATT........................................................1811.001010000
..............................................................................................................AAGCCAGTG--CTGACCGAGC--GG........................................................................................................................................................................................................................................................................2111.001010000
...........................................................................................................................................AA----C---GAGCACGTGA--TCAGC.........................................................................................................................................................................................................................................1811.001100000
..............................................................................GAG-TCGA-CGGAAAATCGG.............................................................................................................................................................................................................................................................................................................1811.001000001
...................................................................................................................................................................................................................................................................................................................................................GATTAA-AACCAAA-ACTAGGATT---.................................2211.001010000
............................................................................TAGAG-TCGA-CGGAAAATCGGTAAATC.......................................................................................................................................................................................................................................................................................................2611.001100000
....................................................................G----C--TAGAG-TCGA-CGGAAAATCGGTAA..........................................................................................................................................................................................................................................................................................................2511.001000010
...............................................................................................................................................................................................................................................................................................................................GTTTGTGTGTTTCTTTTAGAGATT........................................................2411.001000010
.................................................................................................................................................................................................................................................................................................................................TTGTGTGTTTCTTTTAGAGATT........................................................2211.001001000
..............TGAA------------------------CA-CGCGGTAGA------AACCAAG............................................................................................................................................................................................................................................................................................................................................2211.001010000
....................................................................G----C--TAGAG-TCGA-CGGAAAATCGA.............................................................................................................................................................................................................................................................................................................2211.001001000
...........................................................................................................................GACCGAGC--GGATTTAA----C---G.........................................................................................................................................................................................................................................................1811.001010000
................................................GGTAGA------AACCAAGTG----C--TAGAG-T............................................................................................................................................................................................................................................................................................................................2211.001010000
.............................................................................................................................................................................................................TTATTAAAAAACCC-TAATTAAAAAGT.......................................................................................................................................................................2611.001010000
................................................................................................................................AGC--GGATTTAA----C---GAGCACGTGA--TCAGC.........................................................................................................................................................................................................................................2711.001000010
................................................................................................................GCCAGTG--CTGACCGAGC--GGATT.....................................................................................................................................................................................................................................................................2211.001010000
......................................................................................................................................................................................................................................................................................................................CACT--TAAGTTTGTGTGTTC....................................................................1911.001010000
..................................................TAGA------AACCAAGTG----C--TAGAG-TC...........................................................................................................................................................................................................................................................................................................................2111.001100000
...............................................................................................................................................................................................................................TTAAAAAGTCTATGCCGGA.............................................................................................................................................................1911.001010000
.....................................................................................................................................................................................................................AAACCC-TAATTAAAAAGTCTATGCCGGA.............................................................................................................................................................2811.001100000
...................................................................................................................................................................................................................................................................................................................................GTGTGTTTCTTTTAGAGATT........................................................2011.001010000
...........................................................................................................CACAAGCCAGTG--CTGACCGAGC--GG........................................................................................................................................................................................................................................................................2411.001100000
.............................................................................................................................................................GA--TCAGCGCACTAATTAA-AACT--------------------.....................................................................................................................................................................................................2211.001000010
droBip1
GTG----------TTGAA------------------------CA-CGCGGTAGA------AATCAAGTG----C--AAGAG-TCGA-CGGAAAATCGGTAAATCAATCACAAGTCAGCGAGCTGAGCGAGC--GGATTTAA----C---GAGCACGTGA--TCAGCGCACTAATTAA-AACT--------------------AATTTATTAATAAAT--CTAATTTAAAAATCTATGCCGGACACTAAA--AA-CCCC--CAAACAACAACGTGA------------------------AA--TCC-ATCCACT--AAAGTTTGTGTGTTTCTTTTAGCGAATAA-AACTAAA-ACTAGGATT---AATACTCTTCCCATA--GAG--C-CTGTTG---SizeHit CountTotal NormTotal
No Reads
dp5
GTG----------TTGATCGCATACTAACAGGAATATACACACA-CGCGGTAGA------TAG--AGCG----C--ACGAG-TCAA-CGA--AATCGGTAAAGCTGAAACAAGTTAACA--CCAATTAAGC--AGAATTAACGGCC--AGGGCACGTGA--TTAGCCTTTGAATTCGTAGAAAACAAAATCG----------GACTTAATCAAAAATATCAAATATAA---ACTCTGCCGGAAA--GAG--AA-CTCT-CTA-GGTGCGGTG--GC-----------------TAGCGT------ATCTCCACT--AAAGTTTGTGTGTTTCTTTCAGCGA--AAATACTAAT-TCTTGGATT---ACTCCACTTCAATTTTCGAG----CCGTAGCCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................ACA-CGCGGTAGA------TAG--AGC...........................................................................................................................................................................................................................................................................................................................................1812.0020100100000
...............GATCGCATACTAACAGGAAT............................................................................................................................................................................................................................................................................................................................................................................2012.0020200000000
..........................................................................................................................................................................................................................................CTGCCGGAAA--GAG--AA-CTCT-CTA-GG......................................................................................................................................2412.0020000000200
..................CGCATACTAACAGGAATATA.........................................................................................................................................................................................................................................................................................................................................................................2012.0020100001000
................................................GGTAGA------TAG--AGCG----C--ACGAG-T............................................................................................................................................................................................................................................................................................................................2012.0020200000000
...............................................CGGTAGA------TAG--AGCG----C--ACGAG-TC...........................................................................................................................................................................................................................................................................................................................2211.0010100000000
..............................................GCGGTAGA------TAG--AGCG----C--ACGAG-TCAA-CGA--...................................................................................................................................................................................................................................................................................................................2811.0010000000001
.............................................................AG--AGCG----C--ACGAG-TCAA-CGA--AATCG..............................................................................................................................................................................................................................................................................................................2411.0010100000000
.........................................ACA-CGCGGTAGA------TAG--AGCG----C--ACGAG-T............................................................................................................................................................................................................................................................................................................................2611.0010010000000
....................CATACTAACAGGAATATACACA.....................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
......................TACTAACAGGAATATACACACA-CGCGG.............................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
........................................CACA-CGCGGTAGA------TAG--AGC...........................................................................................................................................................................................................................................................................................................................................1911.0010000100000
........................................................................................................................................................................................................................................................................................................................................................................ATT---ACTCCACTTCAATTTTCGAG----C........2411.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................ATACTAAT-TCTTGGATT---ACTCCACTTCA......................2811.0010100000000
....................................................GA------TAG--AGCG----C--ACGAG-TCAA-CGA--...................................................................................................................................................................................................................................................................................................................2211.0010100000000
.....................ATACTAACAGGAATATACACACA-CGC...............................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
..................CGCATACTAACAGGAATATACAC......................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.............................AGGAATATACACACA-CGCGGTAGA------TAG--..............................................................................................................................................................................................................................................................................................................................................2711.0010000100000
................................................................................................................................................................................................................................ATAA---ACTCTGCCGGAAA--GA.......................................................................................................................................................1911.0010000001000
........................................CACA-CGCGGTAGA------TAG--AGCG----......................................................................................................................................................................................................................................................................................................................................2011.0010000001000
.....................................ACACACA-CGCGGTAGA------TAG--AGCG----C--AC.................................................................................................................................................................................................................................................................................................................................2611.0010010000000
..G----------TTGATCGCATACTAACAGG...............................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............................................CGGTAGA------TAG--AGCG----C--ACGAG-TCAA-........................................................................................................................................................................................................................................................................................................................2411.0010100000000
.................................ATATACACACA-CGCGGTA...........................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
......................................CACACA-CGCGGTAGA------TAG--AGC...........................................................................................................................................................................................................................................................................................................................................2111.0010000100000
...............GATCGCATACTAACAGGAATATA.........................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................AT-TCTTGGATT---ACTCCACTTCAATT...................2511.0010100000000
....................................TACACACA-CGCGGTAGA------TAG--..............................................................................................................................................................................................................................................................................................................................................2011.0010100000000
................................................................................................................................................................................................................................................................CT-CTA-GGTGCGGTG--GC-----------------TAGC......................................................................................................2011.0010100000000
....................................TACACACA-CGCGGTAGA------TAG--AGC...........................................................................................................................................................................................................................................................................................................................................2311.0010000100000
............................................................................................................................................................................................................................................................................................................................AAAGTTTGTGTGTTTCTTTCAGC............................................................2311.0010100000000
droPer2
GTG----------TTGATCGCATACTAACAGGAATATACA--CA-CGCGGTAGA------TAG--AGCG----C--ACGAG-TCAA-CGA--AATCGGTAAAGCTGAAACAAGTTAACA--CCAATTAAGC--AGAATTAACGGCC--AGGGCACGTGA--ACAGCCTTTGAATTCGTGGAAAACAAAATCG----------GACTTAATCAAAAATATCAAATATAA---ACTCTGCCGGAAA--GAG--AA-CTCT-CTA-GGTGCGGTG--GC-----------------TAGCGT------ATCTCCACT--AAAGTTTGTGTGTTTCTTTCAGCGA--AAATACTAAT-TCTTGGATT---ACTCCACTTCAATTTTTGAG----CCGTAGCCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................A--CA-CGCGGTAGA------TAG--AGC...........................................................................................................................................................................................................................................................................................................................................1813.003200100
.................................................GTAGA------TAG--AGCG----C--ACGAG-TCA..........................................................................................................................................................................................................................................................................................................................2113.003300000
............................................................................................................................................................................ATTCGTGGAAAACAAAATCG----------GACT.................................................................................................................................................................................................2412.002200000
.........................................................................................................................................................................................................................ATCAAATATAA---ACTCTGCCGGAAA--GA.......................................................................................................................................................2612.002200000
................................................................................................................................................................................................................................ATAA---ACTCTGCCGGAAA--GA.......................................................................................................................................................1912.002200000
...................................................AGA------TAG--AGCG----C--ACGAG-TC...........................................................................................................................................................................................................................................................................................................................1812.002200000
............................CAGGAATATACA--CA-CGCGG.............................................................................................................................................................................................................................................................................................................................................................1911.001001000
.....................................ACA--CA-CGCGGTAGA------TAG--AGC...........................................................................................................................................................................................................................................................................................................................................2011.001001000
..........................................CA-CGCGGTAGA------TAG--AGCG----C--...................................................................................................................................................................................................................................................................................................................................1911.001100000
.............................................................................................................................................................................................................................AATATAA---ACTCTGCCGGAAA--.........................................................................................................................................................2011.001100000
...................................................AGA------TAG--AGCG----C--ACGAG-TCAA-C.......................................................................................................................................................................................................................................................................................................................2111.001001000
........................CTAACAGGAATATACA--CA-CGCG..............................................................................................................................................................................................................................................................................................................................................................2211.001010000
.....................ATACTAACAGGAATATACA--CA-CGCGGT............................................................................................................................................................................................................................................................................................................................................................2711.001001000
..G----------TTGATCGCATACTAACAGGA..............................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.................................................GTAGA------TAG--AGCG----C--ACGAG-T............................................................................................................................................................................................................................................................................................................................1911.001100000
..................................................................................................................................................................................GGAAAACAAAATCG----------GACTTAATC............................................................................................................................................................................................2311.001100000
.................................................GTAGA------TAG--AGCG----C--ACGAG-TCAA-........................................................................................................................................................................................................................................................................................................................2211.001100000
....................................................................................................................................................................................................................................................................................................................................................A--AAATACTAAT-TCTTGGAT.....................................1911.001100000
.........................................................................................................................................................................................................................ATCAAATATAA---ACTCTGCCGG..............................................................................................................................................................2111.001010000
......................................CA--CA-CGCGGTAGA------TAG--AGC...........................................................................................................................................................................................................................................................................................................................................1911.001000001
...................................ATACA--CA-CGCGGTAGA------TAG--AGCG----......................................................................................................................................................................................................................................................................................................................................2311.001010000
...............GATCGCATACTAACAGGAATAA..........................................................................................................................................................................................................................................................................................................................................................................2211.001010000
droVir3
A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--AACGTTTGTGTGTTTATTTTAGCGATCAT--ATTACA-ATTTGGATT---ACTTCGCTTCAT-TC--GAGAGCAACGT-----SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................ACA-ATTTGGATT---ACTTCGCTT........................2112.002000000000000001000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TT---ACTTCGCTTCAT-TC--GAGAGC..........2212.002000000000000000001000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................................................................................................GATCAT--ATTACA-ATTTGGATT---ACTT.............................2512.002001000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................TTGGATT---ACTTCGCTTCAT-TC--GA..............2311.001000000000000000000000000000000000000000000000000000000000000001
.................................................................................................................................................................................................................................................................................................................................................................................TCGCTTCAT-TC--GAGAGCAA........1911.001000000000000000000000000000000000100000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................ACA-ATTTGGATT---ACTTCGC..........................1911.001000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................TACA-ATTTGGATT---ACTTCGCTTCAT-T...................2611.001000010000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................GATCAT--ATTACA-ATTTGGATT---ACTTCGC..........................2811.001000000000000000100000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................ACTTCGCTTCAT-TC--GAGAGCAA........2211.001000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TTACA-ATTTGGATT---ACTTCGCTTC.......................2411.001000000000000000000100000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................CAT--ATTACA-ATTTGGATT---ACTTCGCTT........................2711.001000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................AT--ATTACA-ATTTGGATT---ACTTC............................2211.001000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................................................................................................................................................................................................................................................ATTACA-ATTTGGATT---ACTTCGCTTC.......................2511.001000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................ATTACA-ATTTGGATT---ACTTCGC..........................2211.001000000000000000000000000000000000010000000000000000000000000000

Generated: 05/19/2015 at 01:22 PM