ID:

dsi_20838

 Coordinate:

x:5751497-5751646 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.5 -15.3 -15.2

Flybase annnotation

exon [x_5751647_5751775_-]; five_prime_UTR [x_5751647_5751775_-]; intron [x_5750788_5751646_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GTTGCATTAACGAAACTTCGATAGTATTAGACACTCGACATTCGGCAGCTGTGAGTATGAATCAAATCAGGAGAAAACAAGCAAACATATTCGATAAAATAAACGAACTGAACTTCCAAAGGGCGCTGCCCTTTGTGGGTGTGCGTGTGTGTTAGTGTGTGCGTATGAGTCAGCGTCGGCAGCGCGCAAATGAAAACAATTGTTTTTATGTTATAATTTCATTTAAATGTCCATCCGAAAGTGATAAATC
*******************************************************************************************************((.(((((((((.((((((((...)))))))).))))...........))))).))..***************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 M023
head
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553488
RT_0-2 hours eggs
.........................ATTAGACACTCGACATTCGGCAGC......................................................................................................................................................................................................... 24 0 1 5.00 5 1 4 0 0 0 0 0 0 0 0 0
........................TATTAGACACTCGACATTCGGCAGC......................................................................................................................................................................................................... 25 0 1 4.00 4 2 1 0 0 1 0 0 0 0 0 0
.........................ATTAGACACTCGACATTCGGCAGCT........................................................................................................................................................................................................ 25 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
......................AGTATTAGACACTCGACATTCGGCAGC......................................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................CACTCGACATTCGGCAGC......................................................................................................................................................................................................... 18 0 1 2.00 2 1 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................GTGTGCGTGTGTGTTAGTGTGTG......................................................................................... 23 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
.........................ATTAGACACTCGACATTCGGC............................................................................................................................................................................................................ 21 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0
...............................................................................................................................................................................TCGGCAGCGTGCAAA............................................................ 15 1 17 1.18 20 0 0 0 0 0 0 13 7 0 0 0
......................................................................................................ACGAACTGAACTCCCAAAGGGC.............................................................................................................................. 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.....................TAGTATTAGACACTCGACATTCGGCAGC......................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................CGAACTGAACTTCCAAAGGG............................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................................CGACATTCGGCAGCTGTGAGTATGAA............................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..TGCATTAACCAAACTTCGATAGTA................................................................................................................................................................................................................................ 24 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
GTTGCATTAACGAAACTTCGATAGT................................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................ACTCGACATTCGGCAGCT........................................................................................................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................TAGTATTAGACACTCGACATTCGGC............................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
......TTAACGAAACTTCGATAGTAT............................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1
..............................ACACTCGACATTCGGCAG.......................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................GTATTAGACACTCGACATTCGGCAGCT........................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...GCATTAACGAAACTTCGATAG.................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................TTAGACACTCGACATTCGGCAGCTATC..................................................................................................................................................................................................... 27 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...........................TAGACACTCGACATTCGGCAGC......................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................ACTCGACATTCGGCAGCG........................................................................................................................................................................................................ 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................ATTAGACACTCGACATTCGGCAGCC........................................................................................................................................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................TATTAGACACTCGACATTCGGCAGCT........................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................GCAGTGAACTTCCAAAGGG............................................................................................................................... 19 2 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................TCGCAAAAAAAAACGAACTGAA.......................................................................................................................................... 22 3 13 0.08 1 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................TGTGTTAGTATGTGCATA..................................................................................... 18 2 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

CAACGTAATTGCTTTGAAGCTATCATAATCTGTGAGCTGTAAGCCGTCGACACTCATACTTAGTTTAGTCCTCTTTTGTTCGTTTGTATAAGCTATTTTATTTGCTTGACTTGAAGGTTTCCCGCGACGGGAAACACCCACACGCACACACAATCACACACGCATACTCAGTCGCAGCCGTCGCGCGTTTACTTTTGTTAACAAAAATACAATATTAAAGTAAATTTACAGGTAGGCTTTCACTATTTAG
*****************************************************************************************((.(((((((((.((((((((...)))))))).))))...........))))).))..******************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 GSM343915
embryo
.................................................................................................................................................................................................................................TTACAGGTAGGCTTTCACTAT.... 21 0 1 1.00 1 0 0 0 1 0 0 0 0
................................................................TTAGTCCTCTATTCTTCGGTTGT................................................................................................................................................................... 23 3 1 1.00 1 0 0 1 0 0 0 0 0
..ACGCGCTTGCTTTGAAGCTAT................................................................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CAGGTAGGCATTCACTTTT... 19 2 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................AAGTAAGTTTACAGGT................. 16 1 11 0.73 8 6 0 1 0 0 1 0 0
...................................................................................................................................................................ATAGTGAGTCGCAGCCGTTGC.................................................................. 21 3 8 0.25 2 0 2 0 0 0 0 0 0
...................................GCTGGAAGCCGTGGACA...................................................................................................................................................................................................... 17 2 13 0.23 3 0 0 0 0 3 0 0 0
.........................................................................................................................................................................................................................AAGTAAGTTTACAGG.................. 15 1 20 0.20 4 4 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GAAGTAAGTTTACAGGTA................ 18 2 12 0.08 1 0 0 0 0 0 0 1 0
.................................CTGCTGTAAGCCGTGGACA...................................................................................................................................................................................................... 19 3 13 0.08 1 0 0 0 0 1 0 0 0
........................................................................CTTTTGTTCGTTGGTATC................................................................................................................................................................ 18 2 15 0.07 1 0 0 0 0 0 0 0 1
................................................................................................................................................................................GCCCTCGCGCGTCTAC.......................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................AGTAAGTTTACAGGT................. 15 1 20 0.05 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................TTGGCTTTCACTATT... 15 1 20 0.05 1 0 0 1 0 0 0 0 0
...............................................................................................TTTTAATTGCTTGAC............................................................................................................................................ 15 1 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:5751447-5751696 - dsi_20838 GTTGCATTAACGAA-ACTTC----GATAGTATTAGACAC-----TCGA--------CAT-----TCGGCAGCTG-TGAGT-ATGAATCAAATCAGGA-------G-AAAACA-------------AGC--A-------------------------AACATATTCGATAAAATAAACGA-----------ACTGAA-------------------------CTTCCA-AAGGGCGCTGCCCTT-------------T-GT----GGGTGTGCGT----GTGTGTTA--GTGTGTGCGTATGAGTCAGCGTCGGCAGCG-------CGC-AAATGAAAACAATTGTT-TTTATGTTATA--A------------------------------------------TTTCATTT-AAATGT----CCATCCGAAAGTGATAAATC---------------------
droSec2 scaffold_4:650730-650979 + GTTGCATTAACGAA-ACTTC----GATAGTATTAGACAC-----TCGA--------CAT-----TCGGCAGCTG-TGAGT-ATGAATCAAATCAGGA-------G-TAAACA-------------AGA--A-------------------------AACATATTCGATAAAATAAACGA-----------ACTGAA-------------------------CTCTCA-AAGGGCGCTGCCCTT-------------T-GT----GGGTGTGCGT----GTGTGTTA--GTGTGTGCGTATGAGTCAGCGTCGGCAGCG-------CGC-AAATGAAAACAATTGTT-TTTATGTTATA--A------------------------------------------TTCCATTT-AAATGT----CCATCCGAAAGTGATAAATC---------------------
dm3 chrX:6118840-6119089 - GTTGCATTAACGAA-ACTTC----GATAGTATTAAACAC-----TCGG--------CAT-----TCGGCAGCTG-TGAGT-ATGAATCAAATCAGGC-------G-TAATCA-------------AGC--A-------------------------ATCATATTCGATAAAATAAACGA-----------ACTGAA-------------------------CTCCCA-AAGGGCGCTGCCCTA-------------T-GT----GAGTGTGCGT----GTGTGTTA--GTGTATGCGTATGAGTCAGCGTCGGCAGCG-------CGC-AAATGAAAACAATTGTT-TTTGTGCTATA--A------------------------------------------TTCCATTT-AAATGT----CCATTCGAAAGTGATAAATC---------------------
droEre2 scaffold_4690:15089006-15089255 - GTTGCATTAACGAA-ACTTC----AAAAGTATTAGACAC-----TCGA--------CAT-----TCGGCAGCTG-TGAGT-ATGAATCAAATCAGGC-------G-CAATCA-------------AGC--A-------------------------AACATAATCGATCAAATAAACGA-----------ACTGCA-------------------------GTCCCA-AAGGGCGCTGCCCTT-------------T-GT----GGGTGTGCGT----GTGTGAGA--GTGTGTGCGTATGAGTCAGCGTCGGCAGCG-------CGC-AAAAGAAAACAATTGTT-TTTGTGCTATA--A------------------------------------------ATGCATTT-AAATGT----CCAACCGAATGTGTTAAATC---------------------
droYak3 X:2123220-2123469 - GTTGCATTAACGAA-ACTTC----GAAAGTATTAAACAC-----TCGA--------CAT-----TCGGCAGCTG-TGAGT-ATGAATCAAATCAGGC-------G-TATTCA-------------AGC--T-------------------------AACATAATCGATCAAATAAACGA-----------ACTGAA-------------------------GCCCCA-AAGGGCGCTGCCCTT-------------T-GT----GGGTGTGCGT----GTGTGAGA--GTGTGTGCGTATGAGTCAGCGTCGGCAGCG-------CGC-AAAAGAAAACAATTGTT-TTTGTGCTGTA--A------------------------------------------ATCCATTT-AAATGT----CCATCCGATGGTGATAAATC---------------------
droEug1 scf7180000409033:447553-447779 - GTTGCATTGAAGAA-ACTCC----GAAAGTATTAAACAC-----TCGA--------CAT-----TCGGCAGCTG-TAAGT-ATGAATTAAAGTTGGA-------A-TACACA-------------T--------------------------------------GGAGGACATCAGGAA-----------ATGGAA-------------------------ATTGAA-AAGGGCGCTGCCCTT-------------T-GT----T----------------TGTGA--GAGTGTGTGTATGAGTCAGCGTCGGCACCG-------CGC-AAAAGAAAACAATTGTT-TTTACGGTTAA--T------------------------------------------AAACATCT-ACTTTT----TCATGTGAAAGTAGTAAATC---------------------
droBia1 scf7180000302421:904770-905010 - GTTGCATTAACGAA-ACTCC----GAAAGTATTAAACAC-----TCGA--------CAT-----TCGGCAGCTG-TGAGT-ATGAATCAATTTGGGC-------CGCAGGCGTGCGAAAAACACAAGTAA---AACCAGGA---------------ACCCTATTC----------------------------------------------------------GCCG-AAGGGCGCTGCCCTT-------------T-GC----GGGTGTGCGT----------------GTGAGTGTATGAGTCAGCGGCGGCAGCG-------CGC-AAAAGAAAACAATTGTT-TTCGTGGTAAA--A------------------------------------------GCCCACCT-AAACGC----TCGCCAGAAAGTGATAAATG---------------------
droTak1 scf7180000414425:128853-129103 - GTTGCATTGACGAAAACTCC----TAAAGTATTAAGCAC-----CC-A--------CAT-----TCTGCAGCTG-TGAGT-ATGAATCGATTTGGGC------CG-CAGTCAGGCGGAAAACACGAGTAA---AATA------------------------------AGAAATAAGAAA-----------ACTTAA-------------------------ATCTCA-AAGGGCGCTGCCCTT-------------T-GT----GGGTGTGCGTC--TGTGTGTGA--GTGTGTGCGTATGAGTCAGC---------G-------CGC-AAAAGAAAACAATTGTT-TTTGTGTTAAA--A------------------------------------------GGCCATTT-GAATGC----TCGTCTGAAAGTGATAAATC---------------------
droEle1 scf7180000490141:844507-844743 - GTTGCATTAACGAA-ACTTG----GAAAGTATTAAACAC-----TCGA--------CAT-----TCGGCAGCTG-TGAGT-ATGAATCAAATCAAAC-------G-GAATCA-------------AGA--G-------------------------AA--------ATACAAAAAAGGA-----------A--GAA---------------------------CTTT-AAGGGCGCTGCCCTT-------------T-GT----GGGTGTGCGT----GTTT--GA--GTGTGTGTGTATGAGTCAGCGTCGGCAGCG-------CGC-AAAA-AAAACAATTGTT-TTCGTGGTAAATGA------------------------------------------AACCATTT-GAATGT----AAATCTAAAAGTGATAAGTC---------------------
droRho1 scf7180000779986:896737-896974 + GTTGCATTAACGAA-ACTTG----GAAAGTATTAAACAC-----TCGA--------CAT-----TCGGCAGCTG-TGAGT-ATGAATCAAATCAATC-------G-GAATCA-------------AATGG------AGGATACGAAAACAGC-----------------------------------------AAA-------------------------AACTCA-AAGGGCGCTGCCCTT-------------T-GT----GGGTGTGCGT----GTTT------GAGTGTGTGTATGAGTCAGTGTCGGCAGCG-------CGC-AAAAGAAAACAATTGTT-TTAGTGGTAAAA-A------------------------------------------AAACATTG-GAATGT----GCATATTAAAGTGATAAATC---------------------
droFic1 scf7180000454072:1252741-1252973 + GGTTC--CAACGAA-ACTTT----AAAAGTATTAAA-AC-----TCGA--------CAT-----TCGGCTGCTG-TAAGT-ATGAATTGGACCCACC-------G-A-------------------------------------------------AACATGATAGAAAAAGTCAAGGA-----------GTGGGA-------------------------CAATGA-AAGGGCGCTGTCCTT-------------A-AG----GGCCTCGCGA----TTA--TA----AGTGTGTGTATGAGTCAGCTTCGGCAGCG-------CTC-AAATAAAAACAATAGTT-ATTGGGCTAAA--A------------------------------------------TGATACTT-AAATGT----AAATAGGAAAAAGCC-AGGC---------------------
droKik1 scf7180000299277:79422-79648 - GTTGC--CGACGAA-ACCCT----AAAAGTATTAACAAT-----TCCA--------CAT-----TCGCCAGCTG-TGAGT-ATGAGTTAAATTGGGC-------G-CCACGGC-------CC---------------------------------------------TCAAAGGGACCA-----------A--------------------------------CTCAAGGGGGCGCTGCCCC--------------T-GT----GGGTGTGCGTG-ACGTGTGTGA--GTGTATGCGTATGAGTCAGCGTCGGC------------TCAAAAGGAAAACAATTGTT-TTCGTGGTAA---A------------------------------------------GTACGTTT-AAAAGA----GCATGTGAAAGTGACAGATC---------------------
droAna3 scaffold_13417:779277-779519 - GTTGCATTCACTAA-ATTGA----AAGAGTATTAATCACCAATATCGG--------CAT-----TCGGCAGCTG-TGAGT-ATAAAG--ATTCA-T--------G-A------------------AACGG---------------------AGTGTA---------AGAAAGTCG-GGA-----------GCTGGG-------------------------GG---C-GAGGGCGCTGCCCCT-------------AAAAGGGCGGCTGTG--------TGTGTGT--GTGTGTGCATGTGAGTCAGA---------G-------CTC-AAAAGAAAACAATCGCCTTTCGTGTTCGGAG------------------GCTTCTTC-----------------ATCCGCTGGGTATGT--GCACA-AAGAAAGTGTTAAATC---------------------
droBip1 scf7180000396362:407563-407800 + GTTGCATCAACTAA-ATTGG----AAAAGTATTAATCACCACAATCGA--------CAT-----TCGGCAGCTG-TGAGT-ATGAATCCAAA--GGC-------G-CGA--AT-------CCACAAGCGG---------------------AATTTA---------AGAAAGTCGTG----------------G-----------------------------GACG-AAGGGCGCTGCCCCC-------------A-AA----GGGCGGCTGT--------------GTGTGTGCATGTGAGTCAGC---------G-------CTC-AAAAGAAAACAATAGCCTTTCGTGTTCAGAG------------------GCTTCT--------------------GCCGCTG-GTATGCTGGCCCA-AAGAAAGTGATAAATC---------------------
dp5 XL_group1e:10283914-10284117 - -----------------------------------------------------------------CAGCAGCTG-TGAGT-ATTAACCAAAAATAAA------GG-CATTAAA-------CC--------------GCGAAACG------ACAGCTA------------------------------------------------------------------CACA-AAGGGTGCTACGCGCTACTCTCCCCCCGA--------------------------AAA--GGGCGTGTGTATGAGTCAGAGTCGGCAAAGGCCGTGTCTC-AAAAGAAAACAATCATTTGTCATGCC------------------TCTTTGCATATGTATGTG----------------------TGGGCTTTTACA-TCGAAATTGATAAATC---------------------
droPer2 scaffold_69:237840-238080 + GTTGTACAAA-GA--A-CTG----AAAAGTATTAACCAG-----ACAG--------GAT-------AGCAGCTG-TGAGT-ATTAACCAAAAATAAA------GG-CAATAAA-------CC--------------GCGAAACG------ACAGCTA------------------------------------------------------------------CACA-AAGGGTGCTACGCGCTACTCTCCCCCCGA--------------------------AAA--GGGCGTGTGTATGAGTCAGAGTCGGCAGAGGCCGTGTCTC-AAAAGAAAACAATAATTTGTCATGCC------------------TCTTTGCATATGTATGTG----------------------TGGGCTTTTACA-TCGAAATTGATAAATC---------------------
droVir3 scaffold_12928:885569-885892 - GCTGCAGCGGCAAC-AGTTTAATTAAAAGTATTAAAAAC-----CAAA--------CGTACCTAACGGCAGCTG-TAAGT-ATAAGTGCAATTAATT-------G-A-GCCA-----AATACA--AAAT-GAATACAAT---------CAACAAGAA----------TACAA------A-----------GCTAATATTGCGGCGATCGTTCAGTTGCTGCGCTGCC-CAGCGCTCTGCT---------------------------TGTGC---------TGCGT--CTGTGTGTGTATGAGTCAGCGTCGCGGCCC-------TAT-AAAAGAAAACAAGCAGC-A--------G---AGCACTGTTGAACGCTTTGTAA------GTGATTTACGTGGAATTCGTGAT-AGCAGC----GCATTTGGGGGCAACAAATGGGGCGCGGCTGTGGCTTATTT
droMoj3 scaffold_6328:1861998-1862234 - GCTGCAGCGGCAAC-AGTTTAATTACAAGTATTAAAAAC-----AAGACGCACGTACGT----TCCGGCAACTGGTAAGTTATAAATGTATTTATTTAAAAAAGA-AATGAA---------------------AATAAGAAACG------CAATCAG----------TACAA------AGCCGTTGGCGCAATACA-------------------------GCTTCA-CAGAGCTCTGCTGTT-------------A-AC----ATGTGTGCTTGTATTTGTGCGAGTTTGTGTGTGTATGAGTCAGCGTCGAAGCCC----TA-TAT-AAAAGAAAACAA--------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GTTGCATTAACGAA-ACTTC----GATAGTATTAGACAC-----TCGA--------CAT-----TCGGCAGCTG-TGAGT-ATGAATCAAATCAGGA-------G-AAAACA-------------AGC--A-------------------------AACATATTCGATAAAATAAACGA-----------ACTGAA-------------------------CTTCCA-AAGGGCGCTGCCCTT-------------T-GT----GGGTGTGCGT----GTGTGTTA--GTGTGTGCGTATGAGTCAGCGTCGGCAGCG-------CGC-AAATGAAAACAATTGTT-TTTATGTTATA--A------------------------------------------TTTCATTT-AAATGT----CCATCCGAAAGTGATAAATC---------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................ATTAGACAC-----TCGA--------CAT-----TCGGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................2415.00501400000000000000
.............................TATTAGACAC-----TCGA--------CAT-----TCGGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................2514.00402100000000010000
..............................ATTAGACAC-----TCGA--------CAT-----TCGGCAGCT......................................................................................................................................................................................................................................................................................................................................................................................................2513.00303000000000000000
...........................AGTATTAGACAC-----TCGA--------CAT-----TCGGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................2712.00202000000000000000
....................................CAC-----TCGA--------CAT-----TCGGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................1812.00201010000000000000
..........................................................................................................................................................................................................................................................................GTGTGCGT----GTGTGTTA--GTGTGTG........................................................................................................................................................................2312.00200000000002000000
..............................ATTAGACAC-----TCGA--------CAT-----TCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000000000002000
..........................TAGTATTAGACAC-----TCGA--------CAT-----TCGGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000000000
................................................................................................................................................................................CGA-----------ACTGAA-------------------------CTTCCA-AAGGG......................................................................................................................................................................................................................................2011.00110000000000000000
.............................................CGA--------CAT-----TCGGCAGCTG-TGAGT-ATGAA.........................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
GTTGCATTAACGAA-ACTTC----GATAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
.....................................AC-----TCGA--------CAT-----TCGGCAGCT......................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
..........................TAGTATTAGACAC-----TCGA--------CAT-----TCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
......TTAACGAA-ACTTC----GATAGTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000010000000
...................................ACAC-----TCGA--------CAT-----TCGGCAG........................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
............................GTATTAGACAC-----TCGA--------CAT-----TCGGCAGCT......................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
...GCATTAACGAA-ACTTC----GATAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
................................TAGACAC-----TCGA--------CAT-----TCGGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
.....................................AC-----TCGA--------CAT-----TCGGCAGCG......................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
..............................ATTAGACAC-----TCGA--------CAT-----TCGGCAGCC......................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
.............................TATTAGACAC-----TCGA--------CAT-----TCGGCAGCT......................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
droSec2
GTTGCATTAACGAA-ACTTC----GATAGTATTAGACAC-----TCGA--------CAT-----TCGGCAGCTG-TGAGT-ATGAATCAAATCAGGA-------G-TAAACA-------------AGA--A-------------------------AACATATTCGATAAAATAAACGA-----------ACTGAA-------------------------CTCTCA-AAGGGCGCTGCCCTT-------------T-GT----GGGTGTGCGT----GTGTGTTA--GTGTGTGCGTATGAGTCAGCGTCGGCAGCG-------CGC-AAATGAAAACAATTGTT-TTTATGTTATA--A------------------------------------------TTCCATTT-AAATGT----CCATCCGAAAGTGATAAATC---------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............A-ACTTC----GATAGTATTAGACAC-----T..................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
............................GTATTAGACAC-----TCGA--------CAT-----TCGGCAGCT......................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
...........................AGTATTAGACAC-----TCGA--------CAT-----TCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
.............A-ACTTC----GATAGTATTAGACAC-----TCGA--------C......................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
.....ATTAACGAA-ACTTC----GATAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
...............ACTTC----GATAGTATTAGACAC-----TC.................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
......................................C-----TCGA--------CAT-----TCGGCAGCTG-....................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..................................................................................................................................................................................A-----------ACTGAA-------------------------CTCTCA-AAGGG......................................................................................................................................................................................................................................1811.0010001
dm3
GTTGCATTAACGAA-ACTTC----GATAGTATTAAACAC-----TCGG--------CAT-----TCGGCAGCTG-TGAGT-ATGAATCAAATCAGGC-------G-TAATCA-------------AGC--A-------------------------ATCATATTCGATAAAATAAACGA-----------ACTGAA-------------------------CTCCCA-AAGGGCGCTGCCCTA-------------T-GT----GAGTGTGCGT----GTGTGTTA--GTGTATGCGTATGAGTCAGCGTCGGCAGCG-------CGC-AAATGAAAACAATTGTT-TTTGTGCTATA--A------------------------------------------TTCCATTT-AAATGT----CCATTCGAAAGTGATAAATC---------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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...........................................................................................................................................................................................................................................................................................................TGAGTCAGCGTCGGCAGCG-------..........................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..TGCATTAACGAA-ACTTC----GATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................CGG--------CAT-----TCGGCAGCTG-TGAGT-..............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
.............................................CGG--------CAT-----TCGGCAGCTG-TGAG................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................CTGCCCTA-------------T-GT----GAGTGTGCGT----GTGTG....................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......TTAACGAA-ACTTC----GATAGTATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................AATCAGGC-------G-TAATCA-------------AGC--A-------------------------ATCATA.............................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TCGG--------CAT-----TCGGCAGCTG-TGAG................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................ATGAGTCAGCGTCGGCAGCG-------C.........................................................................................................................................2111.0010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TTC----GATAGTATTAAACAC-----TCGG--------CAT-----T..............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................GG--------CAT-----TCGGCAGCTG-TGAGT-..............................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................GCTGCCCTA-------------T-GT----GAGTGTGCG..............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................GCGTATGAGTCAGCGTCGGCAGC..................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................CAT-----TCGGCAGCTG-TGAG................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................GCTGCCCTA-------------T-GT----GAGTGTGCGT----G........................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..................................................................................................................................................................................................................................................A-------------T-GT----GAGTGTGCGT----GTGTG....................................................................................................................................................................................1921.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
................................TAAACAC-----TCGG--------CAT-----TCGGCAG........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................A-----------ACTGAA-------------------------CTCCCA-AAGGGCG....................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................CTGAA-------------------------CTCCCA-AAGGGCGCT..................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................CAGGC-------G-TAATCA-------------AGC--A-------------------------ATCA...............................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
......................................C-----TCGG--------CAT-----TCGGCAGCTG-TGG.................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................AT-----TCGGCAGCTG-TGAGT-AATC..........................................................................................................................................................................................................................................................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GTTGCATTAACGAA-ACTTC----AAAAGTATTAGACAC-----TCGA--------CAT-----TCGGCAGCTG-TGAGT-ATGAATCAAATCAGGC-------G-CAATCA-------------AGC--A-------------------------AACATAATCGATCAAATAAACGA-----------ACTGCA-------------------------GTCCCA-AAGGGCGCTGCCCTT-------------T-GT----GGGTGTGCGT----GTGTGAGA--GTGTGTGCGTATGAGTCAGCGTCGGCAGCG-------CGC-AAAAGAAAACAATTGTT-TTTGTGCTATA--A------------------------------------------ATGCATTT-AAATGT----CCAACCGAATGTGTTAAATC---------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...GCATTAACGAA-ACTTC----AAAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000020
..................................GACAC-----TCGA--------CAT-----TCGGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
..................................GACAC-----TCGA--------CAT-----TCGGCAGCT......................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
..............................ATTAGACAC-----TCGA--------CAT-----TCGGCAGCT......................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
..........................................................................................................................................................................................................................................................................................GAGA--GTGTGTGCGTATGA.................................................................................................................................................................1811.0010000100
...........................AGTATTAGACAC-----TCGA--------CAT-----TCGGCAGCT......................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000
..............................ATTAGACAC-----TCGA--------CAT-----TCGGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001000
droYak3
GTTGCATTAACGAA-ACTTC----GAAAGTATTAAACAC-----TCGA--------CAT-----TCGGCAGCTG-TGAGT-ATGAATCAAATCAGGC-------G-TATTCA-------------AGC--T-------------------------AACATAATCGATCAAATAAACGA-----------ACTGAA-------------------------GCCCCA-AAGGGCGCTGCCCTT-------------T-GT----GGGTGTGCGT----GTGTGAGA--GTGTGTGCGTATGAGTCAGCGTCGGCAGCG-------CGC-AAAAGAAAACAATTGTT-TTTGTGCTGTA--A------------------------------------------ATCCATTT-AAATGT----CCATCCGATGGTGATAAATC---------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................T-----TCGGCAGCTG-TGAGT-ATGAATCAAA....................................................................................................................................................................................................................................................................................................................................................................................2619.00900000000009
......................................C-----TCGA--------CAT-----TCGGCAGCTG-TGA.................................................................................................................................................................................................................................................................................................................................................................................................2112.00210100000000
......................................C-----TCGA--------CAT-----TCGGCAGCTG-TGAGT-..............................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
GTTGCATTAACGAA-ACTTC----GAAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.........................................................AT-----TCGGCAGCTG-TGAGT-ATG...........................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
......................................C-----TCGA--------CAT-----TCGGCAGCTG-TGAGA-..............................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
.......TAACGAA-ACTTC----GAAAGTATTAAACAC-----...................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
...GCATTAACGAA-ACTTC----GAAAGTATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
...................C----GAAAGTATTAAACAC-----TCGA--------C......................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
..................................AACAC-----TCGA--------CAT-----TCGGCAGCTG-TGA.................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
........AACGAA-ACTTC----GAAAGTATTAAACAC-----TC.................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
...............................TTAAACAC-----TCGA--------CAT-----TCGGCAG........................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
........................GAAAGTATTAAACAC-----TCGA--------CAT-----TCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
...........................AGTATTAAACAC-----TCGA--------CAT-----TCGGCA.........................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
..............................ATTAAACAC-----TCGA--------CAT-----TCGGCAGCT......................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
....CATTAACGAA-ACTTC----GAAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................CATTT-AAATGT----CCATCCGATGGT.............................2311.00100000010000
droEug1
GTTGCATTGAAGAA-ACTCC----GAAAGTATTAAACAC-----TCGA--------CAT-----TCGGCAGCTG-TAAGT-ATGAATTAAAGTTGGA-------A-TACACA-------------T--------------------------------------GGAGGACATCAGGAA-----------ATGGAA-------------------------ATTGAA-AAGGGCGCTGCCCTT-------------T-GT----T----------------TGTGA--GAGTGTGTGTATGAGTCAGCGTCGGCACCG-------CGC-AAAAGAAAACAATTGTT-TTTACGGTTAA--T------------------------------------------AAACATCT-ACTTTT----TCATGTGAAAGTAGTAAATC---------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GTTGCATTAACGAA-ACTCC----GAAAGTATTAAACAC-----TCGA--------CAT-----TCGGCAGCTG-TGAGT-ATGAATCAATTTGGGC-------CGCAGGCGTGCGAAAAACACAAGTAA---AACCAGGA---------------ACCCTATTC----------------------------------------------------------GCCG-AAGGGCGCTGCCCTT-------------T-GC----GGGTGTGCGT----------------GTGAGTGTATGAGTCAGCGGCGGCAGCG-------CGC-AAAAGAAAACAATTGTT-TTCGTGGTAAA--A------------------------------------------GCCCACCT-AAACGC----TCGCCAGAAAGTGATAAATG---------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GTTGCATTGACGAAAACTCC----TAAAGTATTAAGCAC-----CC-A--------CAT-----TCTGCAGCTG-TGAGT-ATGAATCGATTTGGGC------CG-CAGTCAGGCGGAAAACACGAGTAA---AATA------------------------------AGAAATAAGAAA-----------ACTTAA-------------------------ATCTCA-AAGGGCGCTGCCCTT-------------T-GT----GGGTGTGCGTC--TGTGTGTGA--GTGTGTGCGTATGAGTCAGC---------G-------CGC-AAAAGAAAACAATTGTT-TTTGTGTTAAA--A------------------------------------------GGCCATTT-GAATGC----TCGTCTGAAAGTGATAAATC---------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GTTGCATTAACGAA-ACTTG----GAAAGTATTAAACAC-----TCGA--------CAT-----TCGGCAGCTG-TGAGT-ATGAATCAAATCAAAC-------G-GAATCA-------------AGA--G-------------------------AA--------ATACAAAAAAGGA-----------A--GAA---------------------------CTTT-AAGGGCGCTGCCCTT-------------T-GT----GGGTGTGCGT----GTTT--GA--GTGTGTGTGTATGAGTCAGCGTCGGCAGCG-------CGC-AAAA-AAAACAATTGTT-TTCGTGGTAAATGA------------------------------------------AACCATTT-GAATGT----AAATCTAAAAGTGATAAGTC---------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GTTGCATTAACGAA-ACTTG----GAAAGTATTAAACAC-----TCGA--------CAT-----TCGGCAGCTG-TGAGT-ATGAATCAAATCAATC-------G-GAATCA-------------AATGG------AGGATACGAAAACAGC-----------------------------------------AAA-------------------------AACTCA-AAGGGCGCTGCCCTT-------------T-GT----GGGTGTGCGT----GTTT------GAGTGTGTGTATGAGTCAGTGTCGGCAGCG-------CGC-AAAAGAAAACAATTGTT-TTAGTGGTAAAA-A------------------------------------------AAACATTG-GAATGT----GCATATTAAAGTGATAAATC---------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GGTTC--CAACGAA-ACTTT----AAAAGTATTAAA-AC-----TCGA--------CAT-----TCGGCTGCTG-TAAGT-ATGAATTGGACCCACC-------G-A-------------------------------------------------AACATGATAGAAAAAGTCAAGGA-----------GTGGGA-------------------------CAATGA-AAGGGCGCTGTCCTT-------------A-AG----GGCCTCGCGA----TTA--TA----AGTGTGTGTATGAGTCAGCTTCGGCAGCG-------CTC-AAATAAAAACAATAGTT-ATTGGGCTAAA--A------------------------------------------TGATACTT-AAATGT----AAATAGGAAAAAGCC-AGGC---------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GTTGC--CGACGAA-ACCCT----AAAAGTATTAACAAT-----TCCA--------CAT-----TCGCCAGCTG-TGAGT-ATGAGTTAAATTGGGC-------G-CCACGGC-------CC---------------------------------------------TCAAAGGGACCA-----------A--------------------------------CTCAAGGGGGCGCTGCCCC--------------T-GT----GGGTGTGCGTG-ACGTGTGTGA--GTGTATGCGTATGAGTCAGCGTCGGC------------TCAAAAGGAAAACAATTGTT-TTCGTGGTAA---A------------------------------------------GTACGTTT-AAAAGA----GCATGTGAAAGTGACAGATC---------------------SizeHit CountTotal NormTotal
No Reads
droAna3
GTTGCATTCACTAA-ATTGA----AAGAGTATTAATCACCAATATCGG--------CAT-----TCGGCAGCTG-TGAGT-ATAAAG--ATTCA-T--------G-A------------------AACGG---------------------AGTGTA---------AGAAAGTCG-GGA-----------GCTGGG-------------------------GG---C-GAGGGCGCTGCCCCT-------------AAAAGGGCGGCTGTG--------TGTGTGT--GTGTGTGCATGTGAGTCAGA---------G-------CTC-AAAAGAAAACAATCGCCTTTCGTGTTCGGAG------------------GCTTCTTC-----------------ATCCGCTGGGTATGT--GCACA-AAGAAAGTGTTAAATC---------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................AATCACCAATATCGG--------CAT-----TCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................2312.002020000
..............................ATTAATCACCAATATCGG--------C......................................................................................................................................................................................................................................................................................................................................................................................................................1912.002020000
..................................ATCACCAATATCGG--------CAT-----TC.............................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.........................................................................................................................................................................................................................................................................................................................................................CTTTCGTGTTCGGAG------------------GCTTCTTC-----------------ATC.........................................................2611.001010000
........................AAGAGTATTAATCACCAATATCGG--------CAT-----TC.............................................................................................................................................................................................................................................................................................................................................................................................................2911.001010000
.......TCACTAA-ATTGA----AAGAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
.........................................ATATCGG--------CAT-----TCGGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
............................GTATTAATCACCAATATCGG--------C......................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................C-----------------ATCCGCTGGGTATGT--GCAC.......................................2011.001100000
...............................TTAATCACCAATATCGG--------CAT-----TCGGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
..................................ATCACCAATATCGG--------CAT-----TCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
....................................................................................................................................................................................................................................................................................................GTGCATGTGAGTCAGA---------G-------CTC-AAAAG.................................................................................................................................2511.001100000
...............ATTGA----AAGAGTATTAATCACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..............................................................................................................................ACGG---------------------AGTGTA---------AGAAAGTC.................................................................................................................................................................................................................................................................................................1811.001000100
.............................................................................................................................................................................................................................................................................TG--------TGTGTGT--GTGTGTGCA......................................................................................................................................................................18200.051000001
droBip1
GTTGCATCAACTAA-ATTGG----AAAAGTATTAATCACCACAATCGA--------CAT-----TCGGCAGCTG-TGAGT-ATGAATCCAAA--GGC-------G-CGA--AT-------CCACAAGCGG---------------------AATTTA---------AGAAAGTCGTG----------------G-----------------------------GACG-AAGGGCGCTGCCCCC-------------A-AA----GGGCGGCTGT--------------GTGTGTGCATGTGAGTCAGC---------G-------CTC-AAAAGAAAACAATAGCCTTTCGTGTTCAGAG------------------GCTTCT--------------------GCCGCTG-GTATGCTGGCCCA-AAGAAAGTGATAAATC---------------------SizeHit CountTotal NormTotal
No Reads
dp5
-----------------------------------------------------------------CAGCAGCTG-TGAGT-ATTAACCAAAAATAAA------GG-CATTAAA-------CC--------------GCGAAACG------ACAGCTA------------------------------------------------------------------CACA-AAGGGTGCTACGCGCTACTCTCCCCCCGA--------------------------AAA--GGGCGTGTGTATGAGTCAGAGTCGGCAAAGGCCGTGTCTC-AAAAGAAAACAATCATTTGTCATGCC------------------TCTTTGCATATGTATGTG----------------------TGGGCTTTTACA-TCGAAATTGATAAATC---------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................TATGTG----------------------TGGGCTTTTACA-TCG..................................2112.0020100001000
................................................................................................................................................................................................................................................................................................................CAGAGTCGGCAAAGGCCGTG...........................................................................................................................................2011.0010100000000
...............................................................................................................................................................................................................................CACA-AAGGGTGCTACGCGCTA..........................................................................................................................................................................................................................2111.0010000100000
................................................................................................................................................................................................................................ACA-AAGGGTGCTACGCGCT...........................................................................................................................................................................................................................1911.0010100000000
...........................................................................................................................................................TA------------------------------------------------------------------CACA-AAGGGTGCTACGCGC............................................................................................................................................................................................................................2111.0010100000000
...........................................................................................................................................................TA------------------------------------------------------------------CACA-AAGGGTGCTACGCG.............................................................................................................................................................................................................................2011.0010100000000
.............................................................................................................................................................................................................................................................................................................AGTCAGAGTCGGCAAAGGCCG.............................................................................................................................................2111.0010100000000
droPer2
GTTGTACAAA-GA--A-CTG----AAAAGTATTAACCAG-----ACAG--------GAT-------AGCAGCTG-TGAGT-ATTAACCAAAAATAAA------GG-CAATAAA-------CC--------------GCGAAACG------ACAGCTA------------------------------------------------------------------CACA-AAGGGTGCTACGCGCTACTCTCCCCCCGA--------------------------AAA--GGGCGTGTGTATGAGTCAGAGTCGGCAGAGGCCGTGTCTC-AAAAGAAAACAATAATTTGTCATGCC------------------TCTTTGCATATGTATGTG----------------------TGGGCTTTTACA-TCGAAATTGATAAATC---------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...GTACAAA-GA--A-CTG----AAAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.003201000
..............................ATTAACCAG-----ACAG--------GAT-------AGCAGCT......................................................................................................................................................................................................................................................................................................................................................................................................2312.002010001
.......................................................................................................................................................................................................................................................................................................................................................................................TTTGCATATGTATGTG----------------------TGG...............................................1911.001010000
...................G----AAAAGTATTAACCAG-----ACAG--------GAT-------AGC..........................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
...................G----AAAAGTATTAACCAG-----ACAG--------GAT-------.............................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
GTTGTACAAA-GA--A-CTG----AAAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
droVir3
GCTGCAGCGGCAAC-AGTTTAATTAAAAGTATTAAAAAC-----CAAA--------CGTACCTAACGGCAGCTG-TAAGT-ATAAGTGCAATTAATT-------G-A-GCCA-----AATACA--AAAT-GAATACAAT---------CAACAAGAA----------TACAA------A-----------GCTAATATTGCGGCGATCGTTCAGTTGCTGCGCTGCC-CAGCGCTCTGCT---------------------------TGTGC---------TGCGT--CTGTGTGTGTATGAGTCAGCGTCGCGGCCC-------TAT-AAAAGAAAACAAGCAGC-A--------G---AGCACTGTTGAACGCTTTGTAA------GTGATTTACGTGGAATTCGTGAT-AGCAGC----GCATTTGGGGGCAACAAATGGGGCGCGGCTGTGGCTTATTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................AAC-----CAAA--------CGTACCTAACGGCAGCTA-A...................................................................................................................................................................................................................................................................................................................................................................................................2612.002002000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGGCAACAAATGGGG..................1812.002000000000000000000000000000000010000000000000000000000000000100
...........................................................................................................................................................................................................................................................................................................................................................................................................ACGTGGAATTCGTGAT-AG.................................................1812.002000000000000000000000000000100010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATTCGTGAT-AGCAG..............................................1911.001000000000000000000000000000000000000000000000000000000000001000
.............................................AAA--------CGTACCTAACGGCAGCT......................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000001000000000000000000000000000000000000000000000000000000
..........................AAGTATTAAAAAC-----CAAA--------CGTAC..................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000010000000000000000000000000000000
....................................AAC-----CAAA--------CGTACCTAACGGCAGCTA-....................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................GCAGC-A--------G---AGCACTGTTGAAC..........................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
..........CAAC-AGTTTAATTAAAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TGTATGAGTCAGCGTCGCGGCC..................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
....................................AAC-----CAAA--------CGTACCTAACGGCAGCT......................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000100000000000000000000000000000
.............................................AAA--------CGTACCTAACGGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................TGC---------TGCGT--CTGTGTGTGTATG..................................................................................................................................................................2111.001000000000000000000000000000000000001000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTGAT-AGCAGC----GCATTTG..................................2211.001000000000000000000000000000001000000000000000000000000000000000
........................AAAAGTATTAAAAAC-----CAAA--------CGTACC.................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................GTGTATGAGTCAGCGTCG.......................................................................................................................................................1811.001000000000000000000000001000000000000000000000000000000000000000
.............................................AAA--------CGTACCTAACGGCAGCTA-....................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................GTTGAACGCTTTGTAA------GT.........................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
..TGCAGCGGCAAC-AGTTTAATTAAAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000001000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CGTGAT-AGCAGC----GCATTTGGG................................2111.001000000001000000000000000000000000000000000000000000000000000000
..................................AAAAC-----CAAA--------CGTACCTAACGGCAGCTA-....................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TGGAATTCGTGAT-AGCAG..............................................1811.001000000000000000000000000001000000000000000000000000000000000000
..................................AAAAC-----CAAA--------CGTACCTAACGGC..........................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TTGTAA------GTGATTTACGTGG..............................................................1911.001000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................GT--CTGTGTGTGTATGAGT...............................................................................................................................................................1850.201001000000000000000000000000000000000000000000000000000000000000
droMoj3
GCTGCAGCGGCAAC-AGTTTAATTACAAGTATTAAAAAC-----AAGACGCACGTACGT----TCCGGCAACTGGTAAGTTATAAATGTATTTATTTAAAAAAGA-AATGAA---------------------AATAAGAAACG------CAATCAG----------TACAA------AGCCGTTGGCGCAATACA-------------------------GCTTCA-CAGAGCTCTGCTGTT-------------A-AC----ATGTGTGCTTGTATTTGTGCGAGTTTGTGTGTGTATGAGTCAGCGTCGAAGCCC----TA-TAT-AAAAGAAAACAA--------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....AGCGGCAAC-AGTTTAATTACAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002200000
...................................AAAC-----AAGACGCACGTACGT----TCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
..............................................GACGCACGTACGT----TCCGGCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
.........................CAAGTATTAAAAAC-----AAGACGCACGTAC......................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
......................................................................ACTGGTAAGTTATAAATGTAT....................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
....................................AAC-----AAGACGCACGTACGT----TCC.............................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
GCTGCAGCGGCAAC-AGTTTAATTACAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
.............................................AGACGCACGTACGT----TCCGGCAACTG.....................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.............................................AGACGCACGTACGT----TCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
GCTGCAGCGGCAAC-AGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.201000010

Generated: 05/19/2015 at 04:31 PM