dsi_20824

CDS [3l_3095551_3095661_-]; exon [3l_3095097_3095661_-]; intron [3l_3095662_3095994_-]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TCATATGTATGCATGTTTGTGTGTGTGCGGAGGCTGGCGTGTGTATGAGCGTGTTATCGTCGCTTCTGGAAATTCTGATTAGATGTTGCCATCCTATCGACGATTTCTACTAATCTCTAAATGCAATATAGAATACAATATACAATATAACTCACCATACAAGAACTGGCAAGACTAATCTGAACTTCTCTTCTTCGCAGAAAACGAAAGAAGGTCAATATCCGGTGGGTCCCTGGCTCCTGGCTCTGTT **********************************************************************************.............................................................................(((.......((......)).......)))*********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	SRR553485 Chicharo_3 day-old ovaries	O001 Testis	M024 male body	M025 embryo	O002 Head	SRR553486 Makindu_3 day-old ovaries	SRR902008 ovaries	GSM343915 embryo
.....................................................................................................................................................................................................................................TCCCTGGCTCCTGGCTCT...	18	0	1	2.00	2	0	0	2	0	0	0	0	0	0
.................................................................................................................................................................................................................GAAGGTCAATATCCGGTGGGTCCCTGG..............	27	0	1	2.00	2	0	1	0	0	0	0	1	0	0
.....................................................................................................................................................................CTGGCAAGACTAATCTGAACTTCTCT...........................................................	26	0	1	1.00	1	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................AAAGAAGGTCAATATCCGGTGG......................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0
....................................................................................GTTGCCATCCTATCGACGAT..................................................................................................................................................	20	0	1	1.00	1	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................AGGTCAATATCCGGTGGGTCCCTGG..............	25	0	1	1.00	1	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................GAAGGTCAATATCCGGTGGGTCCC.................	24	0	1	1.00	1	0	0	0	0	0	0	0	1	0
...................................................................GGAAATTCTGATTAGATGTT...................................................................................................................................................................	20	0	1	1.00	1	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................GGTCCCTGGCTCCTGGCTCTGTT	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0
........................................................................................................................................AATATTCAATATACCTTACCA.............................................................................................	21	3	14	0.57	8	8	0	0	0	0	0	0	0	0
.....................................................................................................................TAAATGCAATATTTAATACGATA..............................................................................................................	23	3	6	0.17	1	0	0	0	0	0	0	0	0	1
........................................................................................................................................AATATTCAATCTAACTTACCA.............................................................................................	21	3	10	0.10	1	0	0	0	0	0	0	0	0	1
.................................................................................................................................................................AGAACTGGCACGACT..........................................................................	15	1	10	0.10	1	0	1	0	0	0	0	0	0	0
...........................................................................................................................................ATTCAATATAACTTACCA.............................................................................................	18	2	14	0.07	1	1	0	0	0	0	0	0	0	0

AGTATACATACGTACAAACACACACACGCCTCCGACCGCACACATACTCGCACAATAGCAGCGAAGACCTTTAAGACTAATCTACAACGGTAGGATAGCTGCTAAAGATGATTAGAGATTTACGTTATATCTTATGTTATATGTTATATTGAGTGGTATGTTCTTGACCGTTCTGATTAGACTTGAAGAGAAGAAGCGTCTTTTGCTTTCTTCCAGTTATAGGCCACCCAGGGACCGAGGACCGAGACAA *********************************************************.............................................................................(((.......((......)).......)))**********************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	M023 head	O001 Testis	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
.........................................................................................................................................................TGGTATGTTCTTGACCGTT..............................................................................	19	0	1	2.00	2	0	0	2	0	0	0	0	0	0
...........................................................................................AGGATAGCTGCTAAAGATGAT..........................................................................................................................................	21	0	1	2.00	2	0	2	0	0	0	0	0	0	0
......................................................................................................TAAAGATGACTAGAGA....................................................................................................................................	16	1	7	1.00	7	0	0	0	7	0	0	0	0	0
.........................................................GCAGCGAAGACCTTTAAGACT............................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0
................................................................................................................................................................TTCTTGACTGTTCTGATTAGA.....................................................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0
............................................................................................GGATAGCTGCTAAAGATGAT..........................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0
...........................................................AGCGAAGACCTTTAAG...............................................................................................................................................................................	16	0	1	1.00	1	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................TCGGTTTAGACTTGAAGAGTA..........................................................	21	3	3	0.33	1	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................TTTCTGCCACTTATAGGACA........................	20	3	4	0.25	1	0	0	0	0	0	0	1	0	0
..........................................................................................................................................AGATGTTATATTGAG.................................................................................................	15	1	12	0.08	1	0	0	0	0	0	1	0	0	0
AGTATATATACGTACCAA........................................................................................................................................................................................................................................	18	2	14	0.07	1	0	0	0	0	0	0	0	1	0
........................................................................................................AGGATGATTAGAGATAT.................................................................................................................................	17	2	16	0.06	1	0	0	0	0	1	0	0	0	0
.....................................................................................................ATAAAGATGACTAGAGA....................................................................................................................................	17	2	20	0.05	1	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................GGCCGTTCTGAGTAGA.....................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	0	1
.....................................................AATAGCAGCGAAGCCA.....................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	1	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	3l:3095612-3095861 -	dsi_20824	T-------CA------------------TATGT--ATGCATGTTTG--TG----------TGTGTG--C-----G---GAGGCTGG-C------GTGTGTATGAG----------CGTGTTATCGTCGCTTCTGGAAATTCTGATTAGATGTTG-CCA-----------TCCTATC---GACGA-TTTCTA-------------------------------CTAATCTCT--AAATGCAATATAGAATACAATATACAATATAACTCACCAT--ACAAGAACTG-----GCAAGAC-TAATCTG-----AAC-T-TC---TCT-TCTTCGCAGAAAACGAAAGAAGGTCAATATCCGGTGGGTCCCTGGCTCCTGGCTCTGTT
droSec2	scaffold_2:3191510-3191752 -		T-------CA------------------TATGT--ATGCATGTTTG--TG----------TGTGTG--C-----G---GAGGCTGA--------ATGTGTATGAG----------CGTCTTATCGTCGCTTCTGGAAATTCTGATTAGATGTTG-CCA-----------TCCCATC---GAAGA-TTTCTA-------------------------------CTAATCTCT--AAATGCAATATAGAATACAATATAC------ACTCACCAT--ACAAGAACTGAC-----AAGAC-TAATCTG-----AAC-T-TC---TCT-TCTTCGCAGAAAACGAAAGAGGGTCAATATCCGGTGGGTCCCTGGCTCCTGGCTCTGTT
dm3	chr3L:3198382-3198618 -		T-------CA------------------TATGT--ATGCATGTTTG--TA----------TGTGTG--C-----G---GAGGCTGG-C------GTGTGTATGAG----------CGTGTTATCGGCACTTCTGGAAATTCTGATTAGATGTTG-CCA-----------TCCCATC---GACGA-TTTCCA-------------------------------GTAATCTCT--TAATGCAATATA-----CAATAT--------ATTCACCAT--ACAAGATGTGAC-----AAGAC-TAATCTG-----AAC-T-TC---TCT-TTTTCGCAGAAAACGAAAGAGGGTCAATATCCGGTGGGTCCCTGGCTCCTGGCGCTGTT
droEre2	scaffold_4784:5880980-5881225 -		T-------CA------------------TATGT--ATGCATGTTTG--TA------CACATGTGTG--C-----G---GAGGCTGG-C------GTGTGTATGAG----------ACTGTTATCGGCACTTCTGGAAATTCTGATTAGATGTTG-CCG-----------TCCCATC---GACGA-TTTCCA-------------------------------CTAATCTCT--TAATGCAATATA-----CAATAT--------ACTCCCTAT--ACAAGAAGTGACAAGTCAAAGC-TAATCTG-----AAC-T-AC---TCT-TCTTCGCAGAAAACGAAAGAGGGCCAGTATTCCGTGGGACCTTGGCTCCTGGCGCTGTT
droYak3	3L:3743680-3743898 -		T-------CA------------------TATGC--ATGCATGTTTG--TA----------TGTGTG--C-----G---GAGGCTGG-C------GTGTGTATGAC----------AGTGTTATCGGCACTTCTGGAAATTCTGATTAGATGTTG-CCA-----------TCCCATT---GACGA-TTTCCA-------------------------------CTAATCTCT--TAATGCAATACA-----CA--------------------------T-------GAAGTCAAAGC-TAATCTG-----AAA-T-AT---TTT-ACTTTGCAGAAAACGAAAGAGGGACAATATCCCGTGGGTCCATGGCTCCTGGCGCTGTT
droEug1	scf7180000409466:922723-922968 -		T-------AAC----------GTGCA--TATGT--ATGTACATATG--T-T-TATAGCTATGTGTG--C-----G---GAAGCTGG-T--------GTGTGCGAG----------AGTGTTATCGGTACTTCTGGAAATTTTGATTAGACGTTG-CCA-----------TTCCATC---GACGT-TTTTCA-------------------------------CTAATCTCTTTCAATGCAATATA--------------------TTCACTAG--ACAAACGGTCACAAGTCAAAGC-TAATCTG-----TAT-T-T------C-TCTTTGCAGAAAACGAAAGAGGGTCAGTATCCCGTGGGTCCATGGCTTTTGGCGCTCTT
droBia1	scf7180000302428:2547928-2548147 -		C-------GA------------------TGTAG--ATGTA--------------------TGTGTG--C-----GGAGGAAGCTGG-TCTGC--GTGTGTGTGAG----------GGTGTTATCTGCACTTCTGGAAACTCTGATTAGACGTT---------------------------------TTCCA-------------------------------CTAATCACC--AACTGCAATACA----------T--------ATTTACCAC--CC-AGAAGTCAGAAGTCGACGCCTAATCTC-----TGT-T-TCT--ATT-TACTTGCAGAAAACGAAAGAGGGCCAATACCCCGTGGGCCCCTGGCTGCTGGCGCTCTT
droTak1	scf7180000415378:192098-192326 +		T-------AA------------------TGTATGTATGGATGT--G--TG----------CGTGTG--A-----G---GAAGCTGGTC------GTGTGTGTGTG----------TGTGTTATCGGCACTTCTGGAAATTTTGATTAGACGTT---------------------------------TTCCA-------------------------------CTAATCTCT--AACTGCAATATA-----CCATAT--------ATTCACCATCCGCAAAAAGTCACAAGTCAAGGC-TAATCTC-----GAA-T-TC---TCTATCTTCACAGAAAACGAAAGAGGGCCAGTATCCCGTGGGTCCCTGGCTCCTGGCGCTCTT
droEle1	scf7180000491249:2081124-2081330 +		T------------------------------------------------------------GTGTG--A-----G---GAAGCTGT-TATGTGTGAGTGTGTGTG----------TGTGTTATCGGCACTTCTGGAAGT--TGATTACACGTT----------------------------------TCCACTAATTCCT-------------------------ATCTCT--AAATGCAATATA--------------------CTCACCAA--AT--CAAGTCACAAGTCAATAC-TAATCTC-----CTTTATTC---TTACTTTTTATAGAAAACGAAAGAAGGCCAATATCCCGTGGGACCCTGGCTCCTGGCACTTTT
droRho1	scf7180000777063:58544-58753 +		T-------CG------------------TGCGT--TTGT------A--TG----------TGTGTG--A-----G---GAAGCTGG-C------CTG----TGTG----------TGTGTTATCGGCAGTTCTAAAAAT--TGATTACACGTT----------------------------------TCCACTAATTCCT-------------------------ATCTCT--AAATGCAATATA--------------------CCCACAAA--CT--CGAGTCACAAGTTAAAGC-TAATCTC-----TCCAA-TT---TTC-TCTTTATAGAAAACGAAAGAGGGTCAATATCCCGTGGGACCTTGGCTCCTGGCGCTTTT
droFic1	scf7180000454105:1516365-1516563 -		T-------GC------------------TGCGT--ATGCG--TTTGCATG----------TGTGCG--A-----G---GAAGCTGG-T--------GTGTGCGTG----------TGTGTTATCGGCTCTTCTGGAAAT--TGATTAGGTGTT----------------------------------TCCA-------------------------------CTAATCTCT--GACTGCAATATA-----------------------------------AAGACCCAAGACAATGC-TAATCTC-----TAC---TC---TCC-CCTCTCTAGAAAACGAAAGAAGGCCAATATCCAGTGGGTCCGTGGCTCTTGGCGCTCTT
droKik1	scf7180000302577:1383738-1383969 -		T-------GC-----------G------TGTGT--ATGTGTGTGTG--T-TGTGTGTC--TGTGTGAGGAGGGCGGGGGAAGCTGG-T--------GTTTGTGCG----------AGTGTTATCGGCTCTTCTGGAAAT-TTGATTAGATGTTCGCCAT----------------C---GAC--------------TCTCGCCCCGCTAATTCCA-------CTTATCTGC--CATTGCA------------------------------------------------TGTCACAGC-TAATCTC-----TACAT-AT---TTC-CCATTGCAGAAAACGAAAGAGGGTCAGTATCCCGTGGGTCCCTGGCTCCTGGCGCTGTT
droAna3	scaffold_13337:7502751-7502854 -		T-------G-----------------------------CATGTGTG--TG----------AGTGTG-------------GGGCTG----------TCTGTACGAG----------AACGTTATCGCCTCTTCTGGAAAT-ATGATTAGGTGTTG-CCAT----------------C---GACAA-TTT-CA-------------------------------CTAATCTCC--G-ATGCAAT----------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000395543:164629-164732 -		T-------G-----------------------------CATGTGTG--TG----------AGTGTG-------------AGGCTG----------TCAGTATGAG----------AACGTTATCGCCTCTTCTGGAAAT-GTGATTAGGTGTTG-CCAT----------------C---GACAA-TTT-CA-------------------------------CTAATCTCC---AATGCAAT----------------------------------------------------------------------------------------------------------------------------------------------
dp5	XR_group6:4031076-4031316 +		T-------TGCTGTTGTGTTCGTGCGCCAATGT--GTGCGTGTGCG--------TGTCTGTGTGTG--G-----GGAAGAAGCTGG-T----------------G----------TATGCTATCGCTTCTTCGGGAG-CAGTGATTAGCTGTTG-CGTT----------------CGTCAGCG--------TTAACTCATACACCGGCCGTTCAATAATATGCATATCTG--------------------------------------------------TGG-----TGCCTTGGC-TAATTTT-----GATAT-AT---TGG-CATTTTCAGAAAGCGAAAGAGGGACAGTACCCCGTTGGACCCTGGCTCTTGGCGCTGTT
droPer2	scaffold_9:2323129-2323369 +		T-------TGCTGTTGTGTTCGTGCGCCAATGT--GTGCGTGTGCG--------TGTCTGTGTGTG--G-----GGAAGAAGCTGG-T----------------G----------TATGCTATCGCTTCTTCGGGAG-CAGTGATTAGCTGTTG-CGTT----------------CGTCAGCG--------TTAACTCATACACCGGCCGTTCAATAATATGCATATCTG--------------------------------------------------TGG-----TGCCTTGGC-TAATTTT-----GATAT-AT---TGG-CATTTTCAGAAAGCGAAAGAGGGACAGTACCCCGTTGGACCCTGGCTCTTGGCGCTGTT
droWil2	scf2_1100000004762:5024740-5024802 -		C-------TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TCATTTCAGAAAACGAAAGAAGGACAATATCCCGTAGGACCTTGGCTGCTGGCCTTGTT
droVir3	scaffold_13049:8234034-8234248 -	dvi_18941	T-------TGCAAGTGTGCATGTGCGTATCTGT--GTGTGTATGT-------------------------------------------------GTGAGTGTGAGCGTTGAGTCGAATGTTATCGCTGCTTCTGGAAT---TGCTTAGCTGTGG-CT-TCGACGATCTCTTTAATT---AATG---------------------------------------TTTATCTCT--GA-----------------------------------------------------T------GT-TAATCTATTGTTTAT-T-TCTCTTGGCAATTTCCAGAAAGCGAAAGAAGGACAATACCCTGTGGGACCCTGGCTACTGGCATTGTT
droMoj3	scaffold_6680:11895394-11895581 -		G-------CT------------------GATAT--GTGTATTTGTA--TG----------CGTGTG--T-----G---AGAGTTGA-----------------AT----------CGAGTTATCGCTGCTTCTAGATTTT---CCTAGCTGTTG-CT-TCAGCTATCT-TCTGATT---AATGTTTTTTTA-------------------------------CTAATC---------------------------------------------------------------------------CGTTTCTCGT-T-TTT--CGT-TTATTTCAGAAAACGAAAGAGGGACAATACCCGGTTGGGCCCTGGCTTTTGGCATTATT
droGri2	scaffold_15110:7264542-7264745 -		TGTTGTTGCC------------------TGTGT--GTGCATGTTTG--CA----------AGTGTG--T-----G---TGAGTTGA-C------A--------TT----------AATGTTATCGCTGCTTCTAGAACTGATGTTTAGCTGTGGATCTCCAATAGTCTTTCCAATT---AATG------------------------------------------------------------TTGCTTCCAGTTTCT-------------------------------------TA-TAA-ATG-----TTT-T-TA---TTC-TTTTTGCAGAAAGCGAAAGAAGGACAATATCCGGTTGGGCCCTGGCTATTGGCGTTGTT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

T-------CA------------------TATGT--ATGCATGTTTG--TG----------TGTGTG--C-----G---GAGGCTGG-C------GTGTGTATGAG----------CGTGTTATCGTCGCTTCTGGAAATTCTGATTAGATGTTG-CCA-----------TCCTATC---GACGA-TTTCTA-------------------------------CTAATCTCT--AAATGCAATATAGAATACAATATACAATATAACTCACCAT--ACAAGAACTG-----GCAAGAC-TAATCTG-----AAC-T-TC---TCT-TCTTCGCAGAAAACGAAAGAAGGTCAATATCCGGTGGGTCCCTGGCTCCTGGCTCTGTT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................TCCCTGGCTCCTGGCTCT...	18	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................GAAGGTCAATATCCGGTGGGTCCCTGG..............	27	1	2.00	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................CTG-----GCAAGAC-TAATCTG-----AAC-T-TC---TCT-...........................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................AAAGAAGGTCAATATCCGGTGG......................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................GTTG-CCA-----------TCCTATC---GACGA-T......................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................AGGTCAATATCCGGTGGGTCCCTGG..............	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................GAAGGTCAATATCCGGTGGGTCCC.................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................GGAAATTCTGATTAGATGTT.......................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................GGTCCCTGGCTCCTGGCTCTGTT	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

T-------CA------------------TATGT--ATGCATGTTTG--TG----------TGTGTG--C-----G---GAGGCTGA--------ATGTGTATGAG----------CGTCTTATCGTCGCTTCTGGAAATTCTGATTAGATGTTG-CCA-----------TCCCATC---GAAGA-TTTCTA-------------------------------CTAATCTCT--AAATGCAATATAGAATACAATATAC------ACTCACCAT--ACAAGAACTGAC-----AAGAC-TAATCTG-----AAC-T-TC---TCT-TCTTCGCAGAAAACGAAAGAGGGTCAATATCCGGTGGGTCCCTGGCTCCTGGCTCTGTT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..........................................................................................................................................................................................................................................................................................................................................................................GTCCCTGGCTCCTGGCTCT...	19	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................GAAAGAGGGTCAATATCCGGT........................	21	1	1.00	1	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................GTCAATATCCGGTGGGTCCCTG...............	22	1	1.00	1	0	1	0	0
.............................................................GTGTG--C-----G---GAGGCTGA--------ATG...............................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................AAAGAGGGTCAATATCCGGT........................	20	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................AATATCCGGTGGGTCCCTGGCTCCT.........	25	1	1.00	1	0	0	1	0
.................................................................................GCTGA--------ATGTGTATGAG----------CG...........................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................GGTCAATATCCGGTGGGT....................	18	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................ATATCCGGTGGGTCCCTGGC.............	20	1	1.00	1	0	0	1	0

dm3

T-------CA------------------TATGT--ATGCATGTTTG--TA----------TGTGTG--C-----G---GAGGCTGG-C------GTGTGTATGAG----------CGTGTTATCGGCACTTCTGGAAATTCTGATTAGATGTTG-CCA-----------TCCCATC---GACGA-TTTCCA-------------------------------GTAATCTCT--TAATGCAATATA-----CAATAT--------ATTCACCAT--ACAAGATGTGAC-----AAGAC-TAATCTG-----AAC-T-TC---TCT-TTTTCGCAGAAAACGAAAGAGGGTCAATATCCGGTGGGTCCCTGGCTCCTGGCGCTGTT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................................................................................................CTTCTGGAAATTCTGATTAGA...........................................................................................................................................................................................................................................	21	1	17.00	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TATGAG----------CGTGTTATCGGCACT..............................................................................................................................................................................................................................................................	21	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GTCCCTGGCTCCTGGCGCT...	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................ATGTTTG--TA----------TGTGTG--C-----G---GAGG..............................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................GTATGAG----------CGTGTTATCGGC.................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................TGTTATCGGCACTTCTGGAAA......................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ATCCGGTGGGTCCCTGGCTCCTGGCGC....	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TTTCGCAGAAAACGAAAGAGGGT...................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................................................................................................................................................................................................................................................................................................................AAAGAGGGTCAATATCCGGTGGGT....................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ATCCGGTGGGTCCCTGGCTCC..........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TTCGCAGAAAACGAAAGAGGG....................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................AACGAAAGAGGGTCAATATCCGGTG.......................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................CTGG-C------GTGTGTATGAG----------CGTGT........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................GTCAATATCCGGTGGGTCCC.................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................TCGCAGAAAACGAAAGAGGGT...................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................CTGG-C------GTGTGTATGAG----------CGT..........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................AGAC-TAATCTG-----AAC-T-TC---TCT-T..........................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................TG--TA----------TGTGTG--C-----G---GAGGCC............................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

T-------CA------------------TATGT--ATGCATGTTTG--TA------CACATGTGTG--C-----G---GAGGCTGG-C------GTGTGTATGAG----------ACTGTTATCGGCACTTCTGGAAATTCTGATTAGATGTTG-CCG-----------TCCCATC---GACGA-TTTCCA-------------------------------CTAATCTCT--TAATGCAATATA-----CAATAT--------ACTCCCTAT--ACAAGAAGTGACAAGTCAAAGC-TAATCTG-----AAC-T-AC---TCT-TCTTCGCAGAAAACGAAAGAGGGCCAGTATTCCGTGGGACCTTGGCTCCTGGCGCTGTT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................................................................................................................................................................................................................................................................................................................................................GAAAGAGGGCCAGTATTCCGTGG......................	23	1	2.00	2	1	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................AAGC-TAATCTG-----AAC-T-AC---TCT-TCTTCGCA...................................................	28	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................AAGAGGGCCAGTATTCCGTGGGAC...................	24	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CTTGGCTCCTGGCGCTGT.	18	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................ATCTG-----AAC-T-AC---TCT-TCTTCGCAG..................................................	23	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................CCGTGGGACCTTGGCTCCTGGCGCT...	25	1	1.00	1	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................AACGAAAGAGGGCCAGTATTCCGT........................	24	1	1.00	1	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................AGTATTCCGTGGGACCTTGGCTC...........	23	1	1.00	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................GAGGGCCAGTATTCCGTGG......................	19	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................ACCTTGGCTCCTGGCGCTGTT	21	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................GGGCCAGTATTCCGTGGGAC...................	20	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................AAGAGGGCCAGTATTCCGTGGG.....................	22	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................CCGTGGGACCTTGGCTCC..........	18	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................TAT--ACAAGAAGTGACAAGT.............................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................CAGTATTCCGTGGGACCTTGGC.............	22	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................GC-TAATCTG-----AAC-T-AC---TCT-TCTTCG.....................................................	24	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................GGCCAGTATTCCGTGGGACC..................	20	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GACCTTGGCTCCTGGCGCTGT.	21	1	1.00	1	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................GTATTCCGTGGGACCTTGGCT............	21	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................GAAAACGAAAGAGGGCCAGTATTC...........................	24	1	1.00	1	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................AAAACGAAAGAGGGCCAGT...............................	19	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GACCTTGGCTCCTGGCGCTGTT	22	1	1.00	1	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................GAAAGAGGGCCAGTATTCCGTGGGACC..................	27	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................AAAACGAAAGAGGGCCAGTATTC...........................	23	1	1.00	1	0	1	0	0	0	0	0

droYak3

T-------CA------------------TATGC--ATGCATGTTTG--TA----------TGTGTG--C-----G---GAGGCTGG-C------GTGTGTATGAC----------AGTGTTATCGGCACTTCTGGAAATTCTGATTAGATGTTG-CCA-----------TCCCATT---GACGA-TTTCCA-------------------------------CTAATCTCT--TAATGCAATACA-----CA--------------------------T-------GAAGTCAAAGC-TAATCTG-----AAA-T-AT---TTT-ACTTTGCAGAAAACGAAAGAGGGACAATATCCCGTGGGTCCATGGCTCCTGGCGCTGTT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................ATATCCCGTGGGTCCATGGCTC...........	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................GAAAGAGGGACAATATCCCGTGGGTCC..................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................CCCGTGGGTCCATGGCTCCTGGC......	23	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................AAAGAGGGACAATATCCCGTGGGTC...................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TCCCGTGGGTCCATGGCTCCTGGCGC....	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................AATATCCCGTGGGTCCATGGCTCCTG........	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................AAGAGGGACAATATCCCGTGGGT....................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GGGTCCATGGCTCCTGGC......	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GAAAACGAAAGAGGGACAATAT.............................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................GACAATATCCCGTGGGTCC..................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ATCCCGTGGGTCCATGGCTC...........	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CGAAAGAGGGACAATATCC...........................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GTGGGTCCATGGCTCCTGGC......	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

T-------AAC----------GTGCA--TATGT--ATGTACATATG--T-T-TATAGCTATGTGTG--C-----G---GAAGCTGG-T--------GTGTGCGAG----------AGTGTTATCGGTACTTCTGGAAATTTTGATTAGACGTTG-CCA-----------TTCCATC---GACGT-TTTTCA-------------------------------CTAATCTCTTTCAATGCAATATA--------------------TTCACTAG--ACAAACGGTCACAAGTCAAAGC-TAATCTG-----TAT-T-T------C-TCTTTGCAGAAAACGAAAGAGGGTCAGTATCCCGTGGGTCCATGGCTTTTGGCGCTCTT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

C-------GA------------------TGTAG--ATGTA--------------------TGTGTG--C-----GGAGGAAGCTGG-TCTGC--GTGTGTGTGAG----------GGTGTTATCTGCACTTCTGGAAACTCTGATTAGACGTT---------------------------------TTCCA-------------------------------CTAATCACC--AACTGCAATACA----------T--------ATTTACCAC--CC-AGAAGTCAGAAGTCGACGCCTAATCTC-----TGT-T-TCT--ATT-TACTTGCAGAAAACGAAAGAGGGCCAATACCCCGTGGGCCCCTGGCTGCTGGCGCTCTT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

T-------AA------------------TGTATGTATGGATGT--G--TG----------CGTGTG--A-----G---GAAGCTGGTC------GTGTGTGTGTG----------TGTGTTATCGGCACTTCTGGAAATTTTGATTAGACGTT---------------------------------TTCCA-------------------------------CTAATCTCT--AACTGCAATATA-----CCATAT--------ATTCACCATCCGCAAAAAGTCACAAGTCAAGGC-TAATCTC-----GAA-T-TC---TCTATCTTCACAGAAAACGAAAGAGGGCCAGTATCCCGTGGGTCCCTGGCTCCTGGCGCTCTT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

T------------------------------------------------------------GTGTG--A-----G---GAAGCTGT-TATGTGTGAGTGTGTGTG----------TGTGTTATCGGCACTTCTGGAAGT--TGATTACACGTT----------------------------------TCCACTAATTCCT-------------------------ATCTCT--AAATGCAATATA--------------------CTCACCAA--AT--CAAGTCACAAGTCAATAC-TAATCTC-----CTTTATTC---TTACTTTTTATAGAAAACGAAAGAAGGCCAATATCCCGTGGGACCCTGGCTCCTGGCACTTTT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

T-------CG------------------TGCGT--TTGT------A--TG----------TGTGTG--A-----G---GAAGCTGG-C------CTG----TGTG----------TGTGTTATCGGCAGTTCTAAAAAT--TGATTACACGTT----------------------------------TCCACTAATTCCT-------------------------ATCTCT--AAATGCAATATA--------------------CCCACAAA--CT--CGAGTCACAAGTTAAAGC-TAATCTC-----TCCAA-TT---TTC-TCTTTATAGAAAACGAAAGAGGGTCAATATCCCGTGGGACCTTGGCTCCTGGCGCTTTT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

T-------GC------------------TGCGT--ATGCG--TTTGCATG----------TGTGCG--A-----G---GAAGCTGG-T--------GTGTGCGTG----------TGTGTTATCGGCTCTTCTGGAAAT--TGATTAGGTGTT----------------------------------TCCA-------------------------------CTAATCTCT--GACTGCAATATA-----------------------------------AAGACCCAAGACAATGC-TAATCTC-----TAC---TC---TCC-CCTCTCTAGAAAACGAAAGAAGGCCAATATCCAGTGGGTCCGTGGCTCTTGGCGCTCTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

T-------GC-----------G------TGTGT--ATGTGTGTGTG--T-TGTGTGTC--TGTGTGAGGAGGGCGGGGGAAGCTGG-T--------GTTTGTGCG----------AGTGTTATCGGCTCTTCTGGAAAT-TTGATTAGATGTTCGCCAT----------------C---GAC--------------TCTCGCCCCGCTAATTCCA-------CTTATCTGC--CATTGCA------------------------------------------------TGTCACAGC-TAATCTC-----TACAT-AT---TTC-CCATTGCAGAAAACGAAAGAGGGTCAGTATCCCGTGGGTCCCTGGCTCCTGGCGCTGTT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

T-------G-----------------------------CATGTGTG--TG----------AGTGTG-------------GGGCTG----------TCTGTACGAG----------AACGTTATCGCCTCTTCTGGAAAT-ATGATTAGGTGTTG-CCAT----------------C---GACAA-TTT-CA-------------------------------CTAATCTCC--G-ATGCAAT----------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................................................ATTAGGTGTTG-CCAT----------------C---GACA.........................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
.................................................G----------AGTGTG-------------GGGCTG----------TCTGTACGA........................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
................................................................................................................................CTTCTGGAAAT-ATGATTAGGTGT........................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0

droBip1

T-------G-----------------------------CATGTGTG--TG----------AGTGTG-------------AGGCTG----------TCAGTATGAG----------AACGTTATCGCCTCTTCTGGAAAT-GTGATTAGGTGTTG-CCAT----------------C---GACAA-TTT-CA-------------------------------CTAATCTCC---AATGCAAT----------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

T-------TGCTGTTGTGTTCGTGCGCCAATGT--GTGCGTGTGCG--------TGTCTGTGTGTG--G-----GGAAGAAGCTGG-T----------------G----------TATGCTATCGCTTCTTCGGGAG-CAGTGATTAGCTGTTG-CGTT----------------CGTCAGCG--------TTAACTCATACACCGGCCGTTCAATAATATGCATATCTG--------------------------------------------------TGG-----TGCCTTGGC-TAATTTT-----GATAT-AT---TGG-CATTTTCAGAAAGCGAAAGAGGGACAGTACCCCGTTGGACCCTGGCTCTTGGCGCTGTT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................GAAAGCGAAAGAGGGACAG................................	19	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................GGACCCTGGCTCTTGGCGCTG..	21	1	3.00	3	0	3	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GACCCTGGCTCTTGGCGCTGTT	22	1	3.00	3	0	3	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GACCCTGGCTCTTGGCGCT...	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................CCCCGTTGGACCCTGGCTCTTGGCGC....	26	1	2.00	2	0	0	0	0	0	0	0	2	0	0
.........................................................................................................................................................................................................................................................................................................................................................................GGACCCTGGCTCTTGGCGCT...	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................GGACCCTGGCTCTTGGCGC....	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................GACAGTACCCCGTTGGACC..................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................AGGGACAGTACCCCGTTGGACCCTGGC.............	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................GTGATTAGCTGTTG-CGTT----------------CG...............................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TGGACCCTGGCTCTTGGCGC....	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................AAGAGGGACAGTACCCCGTTGGACC..................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ACCCCGTTGGACCCTGGCTCTT.........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ACCCCGTTGGACCCTGGCTCTTGGCGC....	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TAATTTT-----GATAT-AT---TGG-CATT.......................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TGGACCCTGGCTCTTGGCGT....	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TACCCCGTTGGACCCTGGCTCTTGGCGC....	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CGTTGGACCCTGGCTCTTGGCG.....	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................GCGAAAGAGGGACAGTACCCCGTT.......................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TACCCCGTTGGACCCTGGCTCTT.........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................GACAGTACCCCGTTGGACCCTGG..............	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TAT-AT---TGG-CATTTTCAGAAAGCGAAA.........................................	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GAAAGCGAAAGAGGGACA.................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................AGTACCCCGTTGGACCCTGGCTCTTG........	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................GCGAAAGAGGGACAGTACCC...........................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................AGCGAAAGAGGGACAGTACCCCGTTG......................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................AGTACCCCGTTGGACCCTGGCTC...........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ACCCCGTTGGACCCTGGCT............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................GGACAGTACCCCGTTGGACCC.................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................CCGTTGGACCCTGGCTCTTGGCG.....	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................AGCGAAAGAGGGACAGTACCC...........................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................CCCCGTTGGACCCTGGCTCTTGGC......	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ACCCCGTTGGACCCTGGCTCTTGGC......	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

T-------TGCTGTTGTGTTCGTGCGCCAATGT--GTGCGTGTGCG--------TGTCTGTGTGTG--G-----GGAAGAAGCTGG-T----------------G----------TATGCTATCGCTTCTTCGGGAG-CAGTGATTAGCTGTTG-CGTT----------------CGTCAGCG--------TTAACTCATACACCGGCCGTTCAATAATATGCATATCTG--------------------------------------------------TGG-----TGCCTTGGC-TAATTTT-----GATAT-AT---TGG-CATTTTCAGAAAGCGAAAGAGGGACAGTACCCCGTTGGACCCTGGCTCTTGGCGCTGTT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................................................................................................................................................................................................................................................................................ACCCCGTTGGACCCTGGCTCTTGGC......	25	1	11.00	11	11	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ACCCCGTTGGACCCTGGCTCTTGGCGC....	27	1	7.00	7	7	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GTTGGACCCTGGCTCTTGGCGCT...	23	1	6.00	6	6	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................AGTACCCCGTTGGACCCT................	18	1	5.00	5	5	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................GTACCCCGTTGGACCCTGGCTCTT.........	24	1	5.00	5	5	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ACCCCGTTGGACCCTGGCTCTTGGCGCT...	28	1	5.00	5	5	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ACCCCGTTGGACCCTGGCTCTTGGCG.....	26	1	4.00	4	4	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................AGTACCCCGTTGGACCCTGGCTCTTGG.......	27	1	4.00	4	4	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ACCCCGTTGGACCCTGGCT............	19	1	3.00	3	3	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ACCCCGTTGGACCCTGGCTCTTGG.......	24	1	3.00	3	3	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TACCCCGTTGGACCCTGGCTCTTGGCGC....	28	1	3.00	3	3	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ACCCCGTTGGACCCTGGCTCTTG........	23	1	3.00	3	3	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................GTACCCCGTTGGACCCTG...............	18	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ACCCCGTTGGACCCTGGCTCT..........	21	1	2.00	2	2	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................AGTACCCCGTTGGACCCTGGCTCTTGGC......	28	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................CAGTACCCCGTTGGACCCT................	19	1	2.00	2	2	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................GAAAGAGGGACAGTACCCCGTTGGACCCT................	29	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................CCCCGTTGGACCCTGGCTCTTGGCGCTGG.	29	1	2.00	2	2	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GTTGGACCCTGGCTCTTGGCGCC...	23	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TACCCCGTTGGACCCTGGCTCTTGGC......	26	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................AAGAGGGACAGTACCCCGTTGGAC...................	24	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................CCCGTTGGACCCTGGCTCTTGGCGCC...	26	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................GAAAGAGGGACAGTACCCCGTTGGAC...................	26	1	1.00	1	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ACCCCGTTGGACCCTGGCTCTTGGCGCTG..	29	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ACCCCGTTGGACCCTGGCTCTT.........	22	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................AGTACCCCGTTGGACCCTGGCTCTT.........	25	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................AGTACCCCGTTGGACCCTGGC.............	21	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................AGTACCCCGTTGGACCCTGGCTCTTGGCG.....	29	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................CCCCGTTGGACCCTGGCTCTTGGCGCT...	27	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ACCCCGTTGGACCCTGGCTCTTGGCGCC...	28	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................GGACCCTGGCTCTTGGCGCT...	20	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................AGTACCCCGTTGGACCCC................	18	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................AGTACCCCGTTGGACCCTGGCTC...........	23	1	1.00	1	1	0	0	0	0	0
........TGCTGTTGTGTTCGTGCGC.....................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................GTACCCCGTTGGACCCTGGC.............	20	1	1.00	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GACCCTGGCTCTTGGCGCT...	19	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................AAGAGGGACAGTACCCCGTTGGACCCTG...............	28	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................AAAGAGGGACAGTACCCCGTTGGACCCT................	28	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................CCGTTGGACCCTGGCTCTTGGCGCT...	25	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................G-CGTT----------------CGTCAGCG--------TTAACTCATA.......................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................AGTACCCCGTTGGACCCTG...............	19	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................AGTACCCCGTTGGACCCTGGCT............	22	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................CCGTTGGACCCTGGCTCTTGGC......	22	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ACCCCGTTGGACCCTGGCTC...........	20	1	1.00	1	1	0	0	0	0	0

droWil2

C-------TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TCATTTCAGAAAACGAAAGAAGGACAATATCCCGTAGGACCTTGGCTGCTGGCCTTGTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................................................................................................................................................................................................................................................................................................................TCCCGTAGGACCTTGGCTGCTGGCC.....	25	1	4.00	4	4	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................AATATCCCGTAGGACCTTG...............	19	1	2.00	2	0	1	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................GTAGGACCTTGGCTGCTGGCCTTGT.	25	1	2.00	2	0	0	0	2	0
...................................................................................................................................................................................................................................................................................................................................................................CCCGTAGGACCTTGGCTGCT.........	20	1	2.00	2	0	0	1	1	0
.....................................................................................................................................................................................................................................................................................................................................................................CGTAGGACCTTGGCTGCTGGCCTTGTT	27	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................GAAGGACAATATCCCGTAGGAC...................	22	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CGTAGGACCTTGGCTGCTG........	19	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................CAATATCCCGTAGGACCTTGGCT............	23	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ATCCCGTAGGACCTTGGCTGCT.........	22	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................GACAATATCCCGTAGGACCTTGGCTGCT.........	28	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TAGGACCTTGGCTGCTGGCCT....	21	1	1.00	1	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................GAAGGACAATATCCCGTAGGACCTTGGCT............	29	1	1.00	1	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................ACGAAAGAAGGACAATATCCC..........................	21	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................CGTAGGACCTTGGCTGCTGGCCT....	23	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................ATATCCCGTAGGACCTTGGCTGCTGGC......	27	1	1.00	1	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................AAAGAAGGACAATATCCCGTAGGACCT.................	27	1	1.00	1	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................GAAGGACAATATCCCGTAGGACCT.................	24	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GTAGGACCTTGGCTGCTGGCCTT...	23	1	1.00	1	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ATCCCGTAGGACCTTGGCTGCTGGCC.....	26	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................ATATCCCGTAGGACCTTGGC.............	20	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................ATATCCCGTAGGACCTTGGCTGCTGG.......	26	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................AATATCCCGTAGGACCTTGGCTGC..........	24	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................CGAAAGAAGGACAATATCCCGT........................	22	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................AACGAAAGAAGGACAATATC............................	20	1	1.00	1	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................AAGAAGGACAATATCCCGTA.......................	20	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................AATATCCCGTAGGACCTTGGCTGCT.........	25	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GTAGGACCTTGGCTGCTGGC......	20	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................CGTAGGACCTTGGCTGCTGGCC.....	22	1	1.00	1	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................CGAAAGAAGGACAATATCCCGTAGGACC..................	28	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................GTAGGACCTTGGCTGCTGG.......	19	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................ATCCCGTAGGACCTTGGCTGCTGG.......	24	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................AAACGAAAGAAGGACAAT...............................	18	2	0.50	1	1	0	0	0	0

droVir3

T-------TGCAAGTGTGCATGTGCGTATCTGT--GTGTGTATGT-------------------------------------------------GTGAGTGTGAGCGTTGAGTCGAATGTTATCGCTGCTTCTGGAAT---TGCTTAGCTGTGG-CT-TCGACGATCTCTTTAATT---AATG---------------------------------------TTTATCTCT--GA-----------------------------------------------------T------GT-TAATCTATTGTTTAT-T-TCTCTTGGCAATTTCCAGAAAGCGAAAGAAGGACAATACCCTGTGGGACCCTGGCTACTGGCATTGTT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................GTGGGACCCTGGCTACTGGC......	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................AAAGCGAAAGAAGGACAAT...............................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................GAAAGCGAAAGAAGGACA.................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................TCTGGAAT---TGCTTAGCTGTGG-CT-TCG...............................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TGCGTATCTGT--GTGTGTATG....................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ACCCTGTGGGACCCTGGCTACTG........	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ACCCTGTGGGACCCTGGCTACTGGC......	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................AAGAAGGACAATACCCTGTGGGA....................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................CCTGTGGGACCCTGGCTAC..........	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................GAAAGAAGGACAATACCCTGTGG......................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................GACAATACCCTGTGGGACCCTGGCT............	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................AATACCCTGTGGGACCCTGG..............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................ATACCCTGTGGGACCCTGGCTC...........	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................AATACCCTGTGGGACCCTG...............	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ACCCTGTGGGACCCTGGC.............	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................ATACCCTGTGGGACCCTGGCTA...........	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................ATACCCTGTGGGACCCTGGCTACC.........	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TACCCTGTGGGACCCTGGCTACT.........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................AGAAGGACAATACCCTGTGG......................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................T-T-TCTCTTGGCAATTTCCA...................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ACCCTGTGGGACCCTGGCTACTGGCATT...	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TGTGGGACCCTGGCTACTGGC......	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................GAATGTTATCGCTGCTTCTGGA........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................CAATACCCTGTGGGACCCTGGC.............	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................AAAGAAGGACAATACCCTGTGGGACC..................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................T-TCTCTTGGCAATTTCCAG..................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................TACCCTGTGGGACCCTGGCTACTGGCA.....	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TGTGGGACCCTGGCTACTGG.......	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................CCCTGTGGGACCCTGGCTACT.........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................ATACCCTGTGGGACCCTGGCT............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................AAAGCGAAAGAAGGACAATACCCTGTGGGACCC.................	33	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................CCAGAAAGCGAAAGAAGGACA.................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................TACCCTGTGGGACCC.................	15	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

G-------CT------------------GATAT--GTGTATTTGTA--TG----------CGTGTG--T-----G---AGAGTTGA-----------------AT----------CGAGTTATCGCTGCTTCTAGATTTT---CCTAGCTGTTG-CT-TCAGCTATCT-TCTGATT---AATGTTTTTTTA-------------------------------CTAATC---------------------------------------------------------------------------CGTTTCTCGT-T-TTT--CGT-TTATTTCAGAAAACGAAAGAGGGACAATACCCGGTTGGGCCCTGGCTTTTGGCATTATT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................................................................................................................................................................................................................................................................................GACAATACCCGGTTGGGCCCTG...............	22	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................AAGAGGGACAATACCCGGTTGGGCCC.................	26	1	1.00	1	0	0	0	1	0	0
............................................................CGTGTG--T-----G---AGAGTTGA-----------------AT----------CGA..........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................TTA-------------------------------CTAATC---------------------------------------------------------------------------CGTTTCTCGT-T-TT..................................................................	22	1	1.00	1	0	0	0	0	1	0
....................................................................................GA-----------------AT----------CGAGTTATCGCTGCTT.............................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................AGAGGGACAATACCCGGTTG......................	20	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................GACAATACCCGGTTGGGCCCTGG..............	23	1	1.00	1	1	0	0	0	0	0
.................................................................................GTTGA-----------------AT----------CGAGTTATCGC..................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0
............................................TA--TG----------CGTGTG--T-----G---AGAGTTG...........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................GACAATACCCGGTTGGGCCCTGGC.............	24	1	1.00	1	0	0	0	0	0	1

droGri2

TGTTGTTGCC------------------TGTGT--GTGCATGTTTG--CA----------AGTGTG--T-----G---TGAGTTGA-C------A--------TT----------AATGTTATCGCTGCTTCTAGAACTGATGTTTAGCTGTGGATCTCCAATAGTCTTTCCAATT---AATG------------------------------------------------------------TTGCTTCCAGTTTCT-------------------------------------TA-TAA-ATG-----TTT-T-TA---TTC-TTTTTGCAGAAAGCGAAAGAAGGACAATATCCGGTTGGGCCCTGGCTATTGGCGTTGTT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...............................................................................................................................................................................................................................................................................................................................................................ATATCCGGTTGGGCCCTGGCTATTGG.......	26	1	1.00	1	0	1
.............................................................................................................................................................................................................................................................................................................................................................CAATATCCGGTTGGGCCCTGGCTATT.........	26	1	1.00	1	1	0
...................................................................................................................................................................................................................................................................................................................................................................CCGGTTGGGCCCTGGCTATTG........	21	1	1.00	1	1	0
....................................................................................................................................................................................................................................................................................................................................................AAAGAAGGACAATATCCGGTTGGGCC..................	26	1	1.00	1	1	0
.....................................................................................................................................................................................................................................................................................................................................................AAGAAGGACAATATCCGGTTGGGCC..................	25	1	1.00	1	0	1
.................................................................................................................................................................................................................................................................................................................................................................ATCCGGTTGGGCCCTGGCTATTG........	23	1	1.00	1	1	0

-6.8	-6.7	-6.3	-6.2

dsi_20824

3l:3095662-3095811 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads