ID:

dsi_20814

 Coordinate:

2r:4792146-4792295 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-23.3 -23.2 -23.1

Flybase annnotation

CDS [2r_4792296_4792373_-]; exon [2r_4792296_4792373_-]; intron [2r_4791964_4792295_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AAAAGCACGGGCGACTCTTCCGGAGTTCCCTTCATATGCGGATTCTTATCGTGAGTAGAAACTGCCGACTTGGCACTACTGAGATAAATTCGAATTGGTCGCGCTTGGCGAGACCGCTGGTTCTTTAAATAAGAAATTCCGTACATGCACATGTGTTTACAGACTTCAAGATTGAACCATAGCTAATTATTTCAAGTTTCATATATTAGGAAAAAAGCCATTTTCCTTCCAAAGTTCACGGATTTGGCAT
****************************************************.(((((....((((.....)))))))))...............(((((.(((...))).)))))....(((((.....)))))..((.(((.((((....)))).))).))...........**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
....................................................................................................................................................................................................TTTCATATATTAGGAAAAA................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
.....................GGAGTTCCCTTCATATGCGGA................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................TCCTTCCAAAGTTCACGGATT...... 21 0 1 1.00 1 0 0 0 1 0 0 0
.........................................................................................................................................................TGTTTACAGACTTCAAGATTG............................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0
.......CGGGCGACTCTTCCGGAGTTC.............................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
....................................................GAGTAGAAACTGCCGACTTGG................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................................GCCAGGTTCCTTCCGAAGTT.............. 20 3 3 0.33 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTTCCTTCCGAAGTT.............. 15 1 10 0.20 2 1 0 0 0 1 0 0
.....................................................................................................................................................................................................TTGATATAGTAGGAAAAAA.................................. 19 2 5 0.20 1 0 0 0 0 1 0 0
..................................................................................................................................................................................................TGTTTCATCTATGAGGAAAA.................................... 20 3 11 0.09 1 0 0 0 0 0 1 0
.....................................................................................................................................................................................................TTCATATACCAGGAAAAA................................... 18 2 12 0.08 1 0 0 0 0 0 0 1

Anti-sense strand reads

TTTTCGTGCCCGCTGAGAAGGCCTCAAGGGAAGTATACGCCTAAGAATAGCACTCATCTTTGACGGCTGAACCGTGATGACTCTATTTAAGCTTAACCAGCGCGAACCGCTCTGGCGACCAAGAAATTTATTCTTTAAGGCATGTACGTGTACACAAATGTCTGAAGTTCTAACTTGGTATCGATTAATAAAGTTCAAAGTATATAATCCTTTTTTCGGTAAAAGGAAGGTTTCAAGTGCCTAAACCGTA
****************************************************************************.(((((....((((.....)))))))))...............(((((.(((...))).)))))....(((((.....)))))..((.(((.((((....)))).))).))...........**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
............................................................................................................................................................................................................................AAAAGGAAGGTTTCAAGTG........... 19 0 1 2.00 2 0 2 0 0 0 0 0 0
..................................................................................................................................................CGTGTACACAAATCTCTGAAT................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0
...........................................AGAATAGCACTCAGTTTTGTC.......................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GGTAAAAGGAAGGTTTCAAGT............ 21 0 1 1.00 1 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................GGAAGGTTTCAAGTGCCTAA...... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................CCACAAATGTCTGAATTT................................................................................. 18 2 5 0.60 3 0 0 0 0 2 1 0 0
...........................................................................................................................................................AAATGTCTGAATTTTAAACTTG......................................................................... 22 3 5 0.60 3 1 0 0 0 1 0 1 0
...................................................................................................................................................................................ATCGATTAATAAGGTTC...................................................... 17 1 2 0.50 1 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................CGATTAATAAGGTTC...................................................... 15 1 19 0.32 6 1 0 0 2 0 0 0 3
.............................................................................TGACTCTATTTAGGCT............................................................................................................................................................. 16 1 4 0.25 1 0 0 0 0 0 1 0 0
...............................................................................................................................................................GTCTGAACTTCGAACTTG......................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 1 0
....................................................................................................................................................................................TCGATTAATAAGGTTC...................................................... 16 1 5 0.20 1 0 0 0 1 0 0 0 0
........................................................................................................................................................CACAAATGTCTGAATTTT................................................................................ 18 2 16 0.13 2 0 0 0 0 2 0 0 0
............................................................................................................................................................................ACTTGGTATTGATTGAGAAA.......................................................... 20 3 13 0.08 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................AAGCTGAACGTATATAATCC........................................ 20 3 13 0.08 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AGGAAGGTTTCAGGGG........... 16 2 20 0.05 1 0 0 0 0 0 0 0 1
............................................................................................................................................................................ACTTGGTATTGACTAA.............................................................. 16 2 20 0.05 1 0 0 0 0 0 1 0 0

Generated: 04/23/2015 at 04:44 AM