ID:

dsi_20796

 Coordinate:

3l:15729794-15729856 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-7.4 -7.3 -7.2

Flybase annnotation

exon [3l_15729230_15729793_+]; CDS [3l_15729230_15729793_+]; CDS [3l_15729857_15730084_+]; exon [3l_15729857_15730084_+]; intron [3l_15729794_15729856_+]

No Repeatable elements found

mature
  1. 2r:1642-1657 -
  2. 2r:10657-10672 -
  3. 2r:1029426-1029441 -
  4. dsi_20796  3l:15729821-15729836 +
  5. 3l:24153877-24153892 +
  6. node_45218:1727-1742 +
  7. node_91613:5652-5667 -
  8. node_75305:34-49 +
  9. node_110443:1157-1172 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------##################################################
CTCCGCCGCAGCACGTTCTCGGCCTGGCCGGACTCTCTCAACAGTTGCCTGTAAGTCGACCAAGCCATTCAACTATCTGTGAATTGGTTTCATTTGTGTTCCATTTGTTTTAGAAAATCCAAGCGCAAATCCGTCCGATCGGTCCCAGCCAGACAACGACCAT
**************************************************.(((((.((((((..(((..........)))..))))))..))))).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
............................CGGACTCTCTCAACAGTT..................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0
................TCTCGGCCTGGCCGGACG................................................................................................................................. 18 1 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................GTCCGATCGGTCCCAGCCAGACAACGAC... 28 0 1 1.00 1 0 1 0 0 0 0
.....................GCCTGGCCGGACTCTCTC............................................................................................................................ 18 0 1 1.00 1 0 0 0 1 0 0
............ACGTTCTCGGCCTGGCCG..................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
.............................................................................TGTGAATTGGTTTCATTTTTGTG............................................................... 23 2 1 1.00 1 0 0 1 0 0 0
...........CACGTGCTCGGCCAGGCCG..................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0
................................................................................................................................ATCTGTCCGATCGGGC................... 16 2 20 0.45 9 0 0 0 0 9 0
.............................................................................TGTGAATTGGTTTCAT...................................................................... 16 0 9 0.22 2 0 0 2 0 0 0
.............CGTACTGGGCCTGGGCGGAC.................................................................................................................................. 20 3 5 0.20 1 0 0 0 0 1 0
.............................................................................TGTGAATTGGTTTCA....................................................................... 15 0 9 0.11 1 0 0 1 0 0 0
.............................................................................TGGGAATTGGTTTCA....................................................................... 15 1 20 0.05 1 0 0 0 0 0 1
.............................................................................TGTGAATTGGTTTCAGC..................................................................... 17 2 20 0.05 1 0 0 1 0 0 0

Anti-sense strand reads

GAGGCGGCGTCGTGCAAGAGCCGGACCGGCCTGAGAGAGTTGTCAACGGACATTCAGCTGGTTCGGTAAGTTGATAGACACTTAACCAAAGTAAACACAAGGTAAACAAAATCTTTTAGGTTCGCGTTTAGGCAGGCTAGCCAGGGTCGGTCTGTTGCTGGTA
**************************************************.(((((.((((((..(((..........)))..))))))..))))).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
........................ACCGGCCTGAGAGAG............................................................................................................................ 15 0 1 1.00 1 0 1 0
........................................................................................................................TTCGCGTTTAGGCAGGCTAGC...................... 21 0 1 1.00 1 1 0 0
................................................................................................................CTTGTTGGTTCGCGTTTAAG............................... 20 3 9 0.11 1 0 0 1
.....................................................TCAACTGGTTCCGTAAGTTC.......................................................................................... 20 3 11 0.09 1 1 0 0
...........................................................................................................................................GCCAGGGGGGGTCTGT........ 16 2 14 0.07 1 0 1 0

Generated: 04/23/2015 at 07:50 PM