dsi_20795

GCCACGACTACAGGTCAGCAGCAACAGCCAGAGCTGGACATTGAGAACCTGTCGCCGAGCAAGCGTCGTCGTCTGCTCAGCGAAACGGAGGAGTACATCGAGTATCTGCGGAACAAGGAGGACATAACCCTGACCATTGCTCCAAAGGTTCAGCCACCAGCGCCGGTGACATCTCTGCTTAAACGGCAATTGGATCTCAGCACACCTCGTCGGAGTCCCAAGAAGGCGGCTCCGGCCCATAGCAACAGTG ************************************************.((((.(((((.(((....))).))))).))))..((((((.((.(((((.((..(((.(((.((((((((.......)))..)).))).)))...(((...)))..))).))))))))).)))))).......................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	M024 male body	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR902009 testis	M053 female body
.....................................ACATTGAGAACCTGCCGCC..................................................................................................................................................................................................	19	1	1	2.00	2	2	0	0	0	0	0	0	0	0
................................GATTGACATTGAGAACCTGCCGC...................................................................................................................................................................................................	23	3	1	2.00	2	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................TCTGCTTAAACGGCAATTGGATCTCAGC.................................................	28	0	1	2.00	2	0	1	1	0	0	0	0	0	0
................................................CTGACGCCGGGCAAGCGTC.......................................................................................................................................................................................	19	2	1	1.00	1	0	0	0	0	0	0	1	0	0
........................................TTGAGAACCTGTCGCCGAGCAAGCGT........................................................................................................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0	0	0	0
..............................................................................AGCGTAACGGAGGCGTAC..........................................................................................................................................................	18	2	1	1.00	1	0	0	1	0	0	0	0	0	0
..............................................................................AGCGTAACGGAGGAGT............................................................................................................................................................	16	1	3	1.00	3	0	0	2	0	0	0	1	0	0
..................................................................................................................AAGGAGGACATAACCCTGACCATTGCT.............................................................................................................	27	0	1	1.00	1	0	0	0	1	0	0	0	0	0
...........................................................................................................GCGAAACAAGGAGGACATAACCCTGAC....................................................................................................................	27	1	1	1.00	1	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................TGGATCTCAGCACACCTCGTCGGA....................................	24	0	1	1.00	1	0	1	0	0	0	0	0	0	0
...........................CCAGAGCTGGACATTGAGAACC.........................................................................................................................................................................................................	22	0	1	1.00	1	0	0	0	0	1	0	0	0	0
........................................................................................................TCTGCGGAACAAGGAGGACATAA...........................................................................................................................	23	0	1	1.00	1	0	0	0	0	0	0	0	1	0
.........................AGCCAGAGCTGGACATTGAGAACCTGTC.....................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0
...............................................................................................................AACAAGGAGGACATAACCCTGACC...................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0
......................AACAGCCAGAGCTGGACATTGAGAACC.........................................................................................................................................................................................................	27	0	1	1.00	1	0	0	0	0	0	1	0	0	0
..............................................................................................ACATCGAGTATCTGCGGAAC........................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................AATTGGATCTCAGCACACCTCGTCGGA....................................	27	0	1	1.00	1	0	0	0	1	0	0	0	0	0
...............................................................................GCGTAACGGAGGAGT............................................................................................................................................................	15	1	4	0.75	3	0	0	2	0	0	1	0	0	0
..................................TTGACATTGAGAACCTGCCGCCA.................................................................................................................................................................................................	23	3	2	0.50	1	0	0	0	0	1	0	0	0	0
...................................TGACATTGAGAACCTGCCGCC..................................................................................................................................................................................................	21	2	2	0.50	1	0	0	0	0	0	0	0	0	1
.....................................................................................................GTACCTTCGGAAGAAGGAGG.................................................................................................................................	20	3	3	0.33	1	0	0	0	0	0	0	1	0	0
..............................................................................AGAGTAACGGAGGAGTAC..........................................................................................................................................................	18	2	3	0.33	1	0	0	0	0	0	1	0	0	0
..............................................................................AGTGTAACGGAGGAGTAC..........................................................................................................................................................	18	2	3	0.33	1	1	0	0	0	0	0	0	0	0
........................................................GAGCAAGCGACGTCG...................................................................................................................................................................................	15	1	5	0.20	1	0	0	0	0	1	0	0	0	0
.................................................................................GTAACGGAGGAGTAC..........................................................................................................................................................	15	1	6	0.17	1	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................TTAAACGGCAGTTGGA........................................................	16	1	7	0.14	1	0	0	0	0	1	0	0	0	0
..............................................................................AGCGTAACGGAGGCGTA...........................................................................................................................................................	17	2	12	0.08	1	0	0	1	0	0	0	0	0	0
..............................................................................AGCGTAACGGAGGAG.............................................................................................................................................................	15	1	13	0.08	1	0	0	1	0	0	0	0	0	0
...............................................................................GCGTAACGGAGGAGTTC..........................................................................................................................................................	17	2	15	0.07	1	0	0	1	0	0	0	0	0	0
.............................................................................AAGAGTAACGGAGGAGTAC..........................................................................................................................................................	19	3	17	0.06	1	0	0	0	0	0	1	0	0	0
........................................................................................................TATGCCGAACAAGGAGGAGA..............................................................................................................................	20	3	18	0.06	1	0	0	0	0	0	1	0	0	0
....................................................................................................CGTATCTTCGGAAGAAGGA...................................................................................................................................	19	3	19	0.05	1	0	0	0	0	0	1	0	0	0
.......................................................................................................AACTTCGGAACAAGG....................................................................................................................................	15	2	20	0.05	1	0	0	1	0	0	0	0	0	0
................................................................................CGTAACGGAGGCGTAC..........................................................................................................................................................	16	2	20	0.05	1	0	0	1	0	0	0	0	0	0
.......................................................................................................................GGAAACAACCCTGACC...................................................................................................................	16	2	20	0.05	1	0	0	1	0	0	0	0	0	0
...............................................................................GCGTAACGGAGGAGTT...........................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	1	0	0

CGGTGCTGATGTCCAGTCGTCGTTGTCGGTCTCGACCTGTAACTCTTGGACAGCGGCTCGTTCGCAGCAGCAGACGAGTCGCTTTGCCTCCTCATGTAGCTCATAGACGCCTTGTTCCTCCTGTATTGGGACTGGTAACGAGGTTTCCAAGTCGGTGGTCGCGGCCACTGTAGAGACGAATTTGCCGTTAACCTAGAGTCGTGTGGAGCAGCCTCAGGGTTCTTCCGCCGAGGCCGGGTATCGTTGTCAC ************************************************.((((.(((((.(((....))).))))).))))..((((((.((.(((((.((..(((.(((.((((((((.......)))..)).))).)))...(((...)))..))).))))))))).)))))).......................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	M023 head	M025 embryo	SRR618934 dsim w501 ovaries	GSM343915 embryo
..............AGTCGTCGTTGTCGGTCTCGA.......................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
...............................................................................................GTAGCTCATAGACGCCTTGTT......................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0
..........................................................................................................................................CGAGATTTCCAAGTC.................................................................................................	15	1	7	0.14	1	1	0	0	0	0
..........................................................CGGCCGCAGCAGCAGACGA.............................................................................................................................................................................	19	2	8	0.13	1	0	0	1	0	0
.................................................AGCGCGGCTCGTTCGCA........................................................................................................................................................................................	17	2	9	0.11	1	1	0	0	0	0
......................................................................................................ATAGACCCCTTGTTC.....................................................................................................................................	15	1	16	0.06	1	0	0	0	1	0
.................................................................................................................................................................CGGCCACTGTGGAGAACAA......................................................................	19	3	17	0.06	1	0	0	0	0	1
............................................................................................................................................AGGCGTCCAAGACGGTGGT...........................................................................................	19	3	20	0.05	1	0	0	0	1	0

Species	Coordinate	ID	Alignment
droSim2	2r:11701375-11701624 +	dsi_20795	GCCACGACTACAGGTCAGCAGCAACAGCC------------AGAGCTGGACATTGAGAA---CCTGTCGCCGAGCAAGCGTCGTCGTCTGCTCAGCGAAACGGAGGAGTACATCGAGTATCTGCGGAACAAGGAGGACATAACCCTGACCATTGCTCCAAAGGTTCAG---------------CCA---CCAG-----------------------------------------------------C---GC---------------------CGGTG---------------ACATCTCTGCTTAAACGGCAATTGGATCTCAGCACACCTCGTCGGAGTCCCAAGAAGGC---GGCTCCGGCC---------------------------------------------------------CATAGCAAC------------------------------------AGTG---
droSec2	scaffold_1:8524667-8524916 +		GCCACGACTACAGGTCAGCAGCAACAGCC------------AGAGCTGGACATTGAGAA---CCTGTCGCCGAGCAAGCGTCGTCGTCTGCTCAGCGAAACGGAGGAGTACATCGAGTATCTGCGGAACAAGGAGGACATAACCCTGACCATTGCTCCAAAGGTACAG---------------CCA---CCAG-----------------------------------------------------C---GC---------------------CTGTG---------------ACATCTCTGCTTAAACGGCAGTTGGATCTCAGCACACCTCGTCGGAGTCCCAAGAAGGC---GGCTCCGGCC---------------------------------------------------------CACAGCAAC------------------------------------AGTG---
dm3	chr2R:11030300-11030549 +		GCCACGACTACAGGTCAGCAGCAACAGCC------------AGAGCTGGACATTGAGAA---CCTGTCGCCGAGCAAGCGTCGTCGTCTGCTCAGCGAAACGGAGGAGTACATCGAGTATCTGCGGAACAAGGAGGACATAACCCTGACCATTGCTCCAAAGGTTCAG---------------CCA---CCAG-----------------------------------------------------C---GC---------------------CGGTG---------------ACATCTCTGCTTAAACGGCAGTTGGATCTCAGCACACCTCGTCGGAGTCCCAAGAAGGC---GGCTCCGGCC---------------------------------------------------------CACAGCAAC------------------------------------AGTG---
droEre2	scaffold_4845:14843603-14843852 -		GCCACGACTACAGGTCAGCAGCAACGGCC------------AGAGCTGGATATTGAGAA---CCTGTCGCCGAGCAAGCGTCGTCGTTTGCTCAGCGAAACGGAGGAGTACATCGAGTATCTGCGGAACAAGGAGGACATTACACTGACCATTGCTCCAAAGGTTCCG---------------CCA---GCAG-----------------------------------------------------C---GC---------------------CGGTG---------------ACATCTCTGCTCAAACGCCAGTTGGATCTCAGCACACCTCGTCGAAGTCCCAAGAAGGC---GACTCCGGCC---------------------------------------------------------CACAGCAAC------------------------------------AGTG---
droYak3	2R:10950857-10951106 +		GCCACGACTACAGGTCAGCAGCAACAGCC------------AGAGCTGGATATTGAGAA---TCTGTCGCCGAGCAAGCGTCGTCGTCTGCTCAGCGAAACGGAGGAGTACATCGAGTATCTGCGGAACAAGGAGGACATTACCCTGACCATTGCACCGAAGGTGCAG---------------CCC---ACAG-----------------------------------------------------C---GC---------------------CGGTG---------------ACATCTCTGCTCAAACGTCAGTTGGATCTCAGCACACCTCGTCGAAGTCCTAAGAAGGC---GACTCCGGCC---------------------------------------------------------CACAGCAAC------------------------------------AGTG---
droEug1	scf7180000409462:123345-123594 -		GCCACGACTACGGGTCAGCAGCAACAGCC------------GGAACTGGACATTGAGAA---CATGTCGCCGAGCAAACGTCGTCGTCTGCTCAGCGAAACGGAGGAGTACATCGAGTATCTGCGAAACAAGGAGGATATTACTCTGACTATTGCTCCAAAGGTTCAG---------------CCA---CCGC-----------------------------------------------------A---GC---------------------CGGTG---------------ACATCTCTTCTCAAACGCCAGTTGGATCTCAGCACACCTCGTCGAAGCCCAAAGAAGGT---GGCTCCGGCT---------------------------------------------------------CACAGCAAC------------------------------------AGTG---
droBia1	scf7180000302143:1494329-1494584 +		GCCACGACCACGGGTCAGCAGCAACGCCAC---------CCCGAACTGAATATTGAGAA---CCTTTCGCCGAGCAAGCGGCGTCGCCTGCTTAGCGAAACGGAGGAGTACATCGAGTATCTGCGCAACAAGGAGGACATTACCCTGACCATTGCACCGAAAACACAG---------------CCA---CCAC-----------------------------------------------------C---GC---------------------CTGTG---------------ACATCTCTGCTCAAGCGCCAGTTGGATCTCAGTACCCCGCGTCGAAGCCCCAAGAAGGC---GGCTCCGGCT---------------------------------------------------------CACAGTTAC---------------------------------AGCAGCG---
droTak1	scf7180000415389:174268-174529 -		GCCACGACTACGGGTCAGCAGCAGCAGCAGCAGCAACATCCGGAACTGGATATCGAGAA---CATGTCGCCGAGCAAGCGGCGTCGTCTGCTCAGTGAAACGGAGGAGTACATCGAGTATCTGCGCAACAAGGAAGATATTACGCTGACCATTGCTCCCAAGGTCCAG---------------GGC---CCAC-----------------------------------------------------C---GC---------------------CAGTG---------------ACATCGCTGCTCAAGCGCCAGTTGGATCTCAGCACACCGCGTCGCAGTCCCAAGAAGGC---GGCTCCGGCG---------------------------------------------------------CACAGCAAC------------------------------------AGCG---
droEle1	scf7180000491214:3869286-3869536 +		GCCACGACTACGGGTCAGCAGCTGC---C------------GGAATTGGACATTGAGAA---CCTGTCGCCAAGCAAGCGTCGTCGTCTGCTCAGCGAAACGGAGGAGTACATCGAGTATTTGCGTAACAAGGAGGACATAACACTGACCATTGCGCCAAAGCTGCAG---------------CCA---CCGC-----------------------------------------------------C---GC------------------CGCCGGCG------------ACGACATCGCTGCTCAAGCGTCAGTTGGATCTCAGCACGCCGCGTCGGAGTCCCAAGAAGGT---GACGCCGGCT---------------------------------------------------------CACAGCAAC------------------------------------GG-----
droRho1	scf7180000776849:820221-820479 -		GCCACGACTACGGGTCAGCAGCAGCAGCAGGCG------ATAGAGTTGGATATTGAGAA---CATGTCGCCGAGCAAGCGGCGTCGTCTGCTCAGCGAAACGGAGGAGTACATCGAGTATCTGCGAAACAAGGAGGACATAACACTGACCATAGCGCCAAAGATCCAG---------------CCA---CCGC-----------------------------------------------------C---GC---------------------CGGTG---------------ACATCGCTGCTCAAGCGACAGTTGGATCTCAGTACGCCGCGCCGGAGTCCCAAGAAGGC---GGCTCCGGCT---------------------------------------------------------CACAGCAAC------------------------------------GGCGCCT
droFic1	scf7180000453342:892019-892274 -		GCCACGACCACGGGTCAGCAGCAGCAGCAGCAT------CCGGAACTGGACATTGAGAA---CATGTCGCCGAGCAAGCGGCGTCGTCTGCTCAGCGAAACGGAGGAGTACATCGAGTATCTGCGCAACAAAGAGGACATTACTCTGACCATTGCCCCCAAGGTGCAG---------------CAA---CCGC-----------------------------------------------------C---GC---------------------CGGCG---------------ACATCGCTGCTGAAGCGCCAGTTGGATCTCAGCGTACCGCGACGGAGTCCCAAAAAGGC---GGCTCCGGCT---------------------------------------------------------CACAGCAAC------------------------------------AGCG---
droKik1	scf7180000302367:104472-104711 -		GCCACCACAACGGGCCAGCAGCAGCTGCC------------GG---TGGACATTGAGAA---CCTGTCGCCCAGCAAGCGTCGGCGTCTGCTCAGCGAGACCGAAGAGTACATTGAGTATCTGCGGAACAAGGAGGACATCACCTTGACCATAGCACCAAAGGTACCG---------------CGACCCACAT-----------------------------------------------------C---G------------------------------------------CCGTCGCTGCTCAAGCGTCAGCTGGATCTGACTGCGCCACGTCGCAGTCCCAAGAAGGC---GCCACCGCCT---------------------------------------------------------CCGGCCAAC-------------------------------------------
droAna3	scaffold_13266:2317822-2318080 -		GCCACCACCACTGGCCAGCAGCAGCAGCAG---------TTGGATGCCGCCATCGAGAA---CCTGTCGCCGGGGAAGCGCCGTCGGCTACTCAGCGAAACGGAGGAGTACATCGAGTATCTGCGGAACAAGGAGGACATCACGCTGACCATTGCACCCAAGGCCCAG------------CAGCCA---TCGC-----------------------------------------------------C---GC---------------------CACAG---------------ACATCGCTGCTGAAGCGTCAGCTCGACTTGTCCGTCCCCAGGCGGAGTCCCAAGAAGGC---TGCTCCGGCC---------------------------------------------------------CACAACCAC---------------------------------TCCAGTG---
droBip1	scf7180000396759:1362980-1363244 -		GCCACCACCACGGGCCAGCAGCAGCAGCAGCAGCAGCAGTTGGATGCGGCCATTGAGAA---CCTGTCGCCGAGCAAGCGGCGTCGTCTGCTCAGCGAAACGGAGGAGTACATCGAGTATCTGCGCAACAAGGAGGACATCACGCTGACCATTGCACCCAAGGCCCAG------------CAGCCA---TCGC-----------------------------------------------------C---GC---------------------CACAG---------------ACCTCGCTGCTCAAGCGACAGCTGGACTTGTCCGTCCCGCGTCGAAGCCCCAAGAAGGC---GGCTCCGGCC---------------------------------------------------------CACAACAAT------------------------------------GGCA---
dp5	3:8896952-8897249 +		GCCACCACCACGGGCCAGCAGAGACAGCT------------GGATC------TGGACCA---CCTGTCGCCGAGCAAGCGTCGCCGACTGCTTAGCGAGACTGAGGAGTACATTGAGTATCTGCGCAACAAGGAGGACATCACCCTGACCATTACACCCAAGGCGC-----C-CACAGTGAAGTCC---TCGC-----------------------------------------------------CAC---------------CCCAGCCGCCTGCT---------------TCGTCCCTCCTGAAGCGTCAGCTGGATCTGGCGGTGCCTCGCAAGAGTCCAAAAAAGGC---TTCCCCAGCC---------------------------------------------------------CACAGCCACAGCCATAGCCACAGCCAGGCTGCTATTTCCAACGGCCACA---
droPer2	scaffold_4:2782348-2782645 +		GCCACCACCACGGGCCAGCAGAGGCAGCT------------GGATC------TGGACCA---CCTGTCGCCGAGCAAGCGTCGCCGACTGCTTAGCGAGACTGAGGAGTACATTGAGTATCTGCGCAACAAGGAGGACATCACCCTGACCATTACACCCAAGGCGC-----C-CACAGTGAAGTCC---TCGC-----------------------------------------------------CAC---------------CCCAGCCGCCTGCT---------------TCGTCCCTCCTGAAGCGTCAGCTGGATCTGGCGGTGCCTCGCAAGAGTCCAAAAAAGGC---TTCCCCAGCC---------------------------------------------------------CACAGCCACAGCCATAGCCACAGCCAGGCAGCTATTTCCAACGGCCACA---
droWil2	scf2_1100000004512:2446563-2446863 +		GCCACGACAACGGGCCAACAGGAGGTGGT------------AGAA------------------CCATCGCCCCAAAAGCGCCGTCGATTGCTTAGCGAAACGGAGGAGTACATAGAATATTTGCGTAACAAAGAGGATATCACTTTGACCATAACACCCAAATTGTCAGGTCCGCCCATGAAGACA---TCGCCTCC---AACCCCAATA------GCTTC--------------------------------TACTCTTCCTCCTCAATCACCACAGACATCATCAGGAGCCAGCTCTCTGCTCAAACGACAACTGGATTTGTCTGCGCCCCGGAAAAGTCCTAAAAAGAA---CGCCCCACTA---------------------------------------------------------AGCACTACC------------------------------------AACT---
droVir3	scaffold_12875:9897868-9898225 +		GCGACAACAACAGGTCAGCAGCGGGAGCG------------AGAGCGTGAACGTGAGCAAACGTTGTCGCCCAGCAAGCGGCGACGCCTGCTGAGCGAGACCGAGGAGTACATAGAGTATCTGCGCAACAAGGAGGATATCACGCTTACCATAACGCCCAAGGTGC-----C-TAACA--------------GCAGCAGCAGCAATAACA------G---------TGCGCCGTTAAAGTCAACTGCAGCGCCGGCTTTACAGC---------C---G---------------CAGTCGCTGCTCAAACGTCAGCTGGATCTGGCAGCACCACGAAAAAGTCCCAAGAAAGTACCAGTAGTAAATCAAAATGCCCTCAACAACAGTAGCATTAC------------------------------CAACAACATCAATGGCAACAGCAACG---------CCAGCAGCAGCG---
droMoj3	scaffold_6496:17135943-17136282 -		GCAACTACGACGGGCCAGCAGCAG---------------------------------------TTGTCGCCCGGCAAGCGGCGACGTCTGATGAGCGAGACCGAGGAGTATATTGAGTATCTGCGCAACAAGGAGGACATTACACTGACCATAACACCCAAGGTGC-----C-TACCG--------------GCAGCAGCAACAGCAACA------GCAGCAGCGCTGCGCCGCCAAAGTTAACAGTGGCGCCGGCATCGCAGC---------CC------------------CAGTCGCTGCTCAAGCGTCAACTAGATCTGGCAGCACCGCGTAAAAGCCCCAAGAAGCC---GGCTGTTAGTCAACATACTCTTAACAGCAACAGCAGCAGCTGCAACAGCAACATCAATAACAGCCCCAATAACAGC------------------------------------AGCG---
droGri2	scaffold_15245:3098789-3099131 +		GCGACGACAACCGGCCAGCAGAGAGAGCAGAGAGAGCAAAGAGAGCGAGAACTAGA------GTTAACATACGGCAAGCGACGGCGACTACTGAGCGAGACGGAGGAGTACATTGAGTATCTGCGCAACAAGGAGGACATTACTCTCACCATCACACCAAAGGTGT-----C-CAACA--------------ACAGCAACAACAA---CAGCATTAACAGCAGCAACGCACCGTTAAAATCATTAACAGCGCCGG------------------CGCAG---------------CAGTCGCTGCTTAAACGTCAGCTGGATCTGGCAACACCGCGCAAAAGTCCCAAAAAAGC---AGCAGCAAACCAAAATACCCTCAACAACA------------------------------------------------GCAACAACAACAG---------------CAGCAGCAGCA---

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GCCACGACTACAGGTCAGCAGCAACAGCC------------AGAGCTGGACATTGAGAA---CCTGTCGCCGAGCAAGCGTCGTCGTCTGCTCAGCGAAACGGAGGAGTACATCGAGTATCTGCGGAACAAGGAGGACATAACCCTGACCATTGCTCCAAAGGTTCAG---------------CCA---CCAG-----------------------------------------------------C---GC---------------------CGGTG---------------ACATCTCTGCTTAAACGGCAATTGGATCTCAGCACACCTCGTCGGAGTCCCAAGAAGGC---GGCTCCGGCC---------------------------------------------------------CATAGCAAC------------------------------------AGTG---	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................................................................................................................................................................................................................TCTGCTTAAACGGCAATTGGATCTCAGC....................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
....................................................TTGAGAA---CCTGTCGCCGAGCAAGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................AAGGAGGACATAACCCTGACCATTGCT..............................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................TGGATCTCAGCACACCTCGTCGGA.......................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................CC------------AGAGCTGGACATTGAGAA---CC..........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................TCTGCGGAACAAGGAGGACATAA............................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................AGCC------------AGAGCTGGACATTGAGAA---CCTGTC......................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................AACAAGGAGGACATAACCCTGACC....................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................AACAGCC------------AGAGCTGGACATTGAGAA---CC..........................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................ACATCGAGTATCTGCGGAAC.........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................AATTGGATCTCAGCACACCTCGTCGGA.......................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GCCACGACTACAGGTCAGCAGCAACAGCC------------AGAGCTGGACATTGAGAA---CCTGTCGCCGAGCAAGCGTCGTCGTCTGCTCAGCGAAACGGAGGAGTACATCGAGTATCTGCGGAACAAGGAGGACATAACCCTGACCATTGCTCCAAAGGTACAG---------------CCA---CCAG-----------------------------------------------------C---GC---------------------CTGTG---------------ACATCTCTGCTTAAACGGCAGTTGGATCTCAGCACACCTCGTCGGAGTCCCAAGAAGGC---GGCTCCGGCC---------------------------------------------------------CACAGCAAC------------------------------------AGTG---	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...............................................................................GTCGTCGTCTGCTCAGCGAAA......................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.......................ACAGCC------------AGAGCTGGACATTGAGA................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
.........................................................AA---CCTGTCGCCGAGCAAGC...........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
...........................CC------------AGAGCTGGACATTGAGA................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0
..................................................................TCGCCGAGCAAGCGTCGTCGTCTGCT..............................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
...........................................AGCTGGACATTGAGAA---CCTGTC......................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0

dm3

GCCACGACTACAGGTCAGCAGCAACAGCC------------AGAGCTGGACATTGAGAA---CCTGTCGCCGAGCAAGCGTCGTCGTCTGCTCAGCGAAACGGAGGAGTACATCGAGTATCTGCGGAACAAGGAGGACATAACCCTGACCATTGCTCCAAAGGTTCAG---------------CCA---CCAG-----------------------------------------------------C---GC---------------------CGGTG---------------ACATCTCTGCTTAAACGGCAGTTGGATCTCAGCACACCTCGTCGGAGTCCCAAGAAGGC---GGCTCCGGCC---------------------------------------------------------CACAGCAAC------------------------------------AGTG---	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................................................................................TCGAGTATCTGCGGAACAAGGA....................................................................................................................................................................................................................................................................................................................................................	22	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................TCGAGTATCTGCGGAACAAGGAG...................................................................................................................................................................................................................................................................................................................................................	23	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................TCGAGTATCTGCGGAACAAG......................................................................................................................................................................................................................................................................................................................................................	20	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................TCGAGTATCTGCGGAACAAGG.....................................................................................................................................................................................................................................................................................................................................................	21	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................AGTACATCGAGTATCTGCGGAACAAGGA....................................................................................................................................................................................................................................................................................................................................................	28	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................AGTACATCGAGTATCTGCGGAACA........................................................................................................................................................................................................................................................................................................................................................	24	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................AGTACATCGAGTATCTGCGGAACAAGG.....................................................................................................................................................................................................................................................................................................................................................	27	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................AGTACATCGAGTATCTGCGGAAC.........................................................................................................................................................................................................................................................................................................................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................GTCTGCTCAGCGAAACGGAGGA...............................................................................................................................................................................................................................................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................................................GCAAGCGTCGTCGTCTGC...............................................................................................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................AGTACATCGAGTATCTGCGGAACAA.......................................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................................................CAG---------------CCA---CCAG-----------------------------------------------------C---GC---------------------CGGTG---------------ACATCTCT.............................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................CAAAGGTTCAG---------------CCA---CCAG-----------------------------------------------------C---G...............................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................AGGAGTACATCGAGTATCTGC..............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................CGAGTATCTGCGGAACAAGGAG...................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................CACCTCGTCGGAGTCCCAAGAAGGC---G......................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................AGTTGGATCTCAGCACACCTCGTCG.........................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GCCACGACTACAGGTCAGCAGCAACGGCC------------AGAGCTGGATATTGAGAA---CCTGTCGCCGAGCAAGCGTCGTCGTTTGCTCAGCGAAACGGAGGAGTACATCGAGTATCTGCGGAACAAGGAGGACATTACACTGACCATTGCTCCAAAGGTTCCG---------------CCA---GCAG-----------------------------------------------------C---GC---------------------CGGTG---------------ACATCTCTGCTCAAACGCCAGTTGGATCTCAGCACACCTCGTCGAAGTCCCAAGAAGGC---GACTCCGGCC---------------------------------------------------------CACAGCAAC------------------------------------AGTG---	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................................TGCGGAACAAGGAGGACATTACAC.........................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................GAGGACATTACACTGACCATT.................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................TCTCAGCACACCTCGTCGAA.......................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................ATCTGCGGAACAAGGAGGACATTACACT........................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
.......................................................AGAA---CCTGTCGCCGAGCAAGC...........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................TGCTCCAAAGGTTCCG---------------CCA---GCAG-----------------------------------------------------C---GC---------------------.........................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................CAAACGCCAGTTGGATCTCAGT....................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0

droYak3

GCCACGACTACAGGTCAGCAGCAACAGCC------------AGAGCTGGATATTGAGAA---TCTGTCGCCGAGCAAGCGTCGTCGTCTGCTCAGCGAAACGGAGGAGTACATCGAGTATCTGCGGAACAAGGAGGACATTACCCTGACCATTGCACCGAAGGTGCAG---------------CCC---ACAG-----------------------------------------------------C---GC---------------------CGGTG---------------ACATCTCTGCTCAAACGTCAGTTGGATCTCAGCACACCTCGTCGAAGTCCTAAGAAGGC---GACTCCGGCC---------------------------------------------------------CACAGCAAC------------------------------------AGTG---	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................TCGTCGTCTGCTCAGCGAAACGGAG.................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3
...............CAGCAGCAACAGCC------------AGAGCTGGATAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................ACCCTGACCATTGCACCGAAGGT......................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................GGATATTGAGAA---TCTGTCGCCGAGCAA.............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................CATCGAGTATCTGCGGAACAAGG.....................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................C---GC---------------------CGGTG---------------ACATCTCTGCTCAAACGTCAGTT..............................................................................................................................................................	31	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1

droEug1

GCCACGACTACGGGTCAGCAGCAACAGCC------------GGAACTGGACATTGAGAA---CATGTCGCCGAGCAAACGTCGTCGTCTGCTCAGCGAAACGGAGGAGTACATCGAGTATCTGCGAAACAAGGAGGATATTACTCTGACTATTGCTCCAAAGGTTCAG---------------CCA---CCGC-----------------------------------------------------A---GC---------------------CGGTG---------------ACATCTCTTCTCAAACGCCAGTTGGATCTCAGCACACCTCGTCGAAGCCCAAAGAAGGT---GGCTCCGGCT---------------------------------------------------------CACAGCAAC------------------------------------AGTG---	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCCACGACCACGGGTCAGCAGCAACGCCAC---------CCCGAACTGAATATTGAGAA---CCTTTCGCCGAGCAAGCGGCGTCGCCTGCTTAGCGAAACGGAGGAGTACATCGAGTATCTGCGCAACAAGGAGGACATTACCCTGACCATTGCACCGAAAACACAG---------------CCA---CCAC-----------------------------------------------------C---GC---------------------CTGTG---------------ACATCTCTGCTCAAGCGCCAGTTGGATCTCAGTACCCCGCGTCGAAGCCCCAAGAAGGC---GGCTCCGGCT---------------------------------------------------------CACAGTTAC---------------------------------AGCAGCG---	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCCACGACTACGGGTCAGCAGCAGCAGCAGCAGCAACATCCGGAACTGGATATCGAGAA---CATGTCGCCGAGCAAGCGGCGTCGTCTGCTCAGTGAAACGGAGGAGTACATCGAGTATCTGCGCAACAAGGAAGATATTACGCTGACCATTGCTCCCAAGGTCCAG---------------GGC---CCAC-----------------------------------------------------C---GC---------------------CAGTG---------------ACATCGCTGCTCAAGCGCCAGTTGGATCTCAGCACACCGCGTCGCAGTCCCAAGAAGGC---GGCTCCGGCG---------------------------------------------------------CACAGCAAC------------------------------------AGCG---	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCCACGACTACGGGTCAGCAGCTGC---C------------GGAATTGGACATTGAGAA---CCTGTCGCCAAGCAAGCGTCGTCGTCTGCTCAGCGAAACGGAGGAGTACATCGAGTATTTGCGTAACAAGGAGGACATAACACTGACCATTGCGCCAAAGCTGCAG---------------CCA---CCGC-----------------------------------------------------C---GC------------------CGCCGGCG------------ACGACATCGCTGCTCAAGCGTCAGTTGGATCTCAGCACGCCGCGTCGGAGTCCCAAGAAGGT---GACGCCGGCT---------------------------------------------------------CACAGCAAC------------------------------------GG-----	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCCACGACTACGGGTCAGCAGCAGCAGCAGGCG------ATAGAGTTGGATATTGAGAA---CATGTCGCCGAGCAAGCGGCGTCGTCTGCTCAGCGAAACGGAGGAGTACATCGAGTATCTGCGAAACAAGGAGGACATAACACTGACCATAGCGCCAAAGATCCAG---------------CCA---CCGC-----------------------------------------------------C---GC---------------------CGGTG---------------ACATCGCTGCTCAAGCGACAGTTGGATCTCAGTACGCCGCGCCGGAGTCCCAAGAAGGC---GGCTCCGGCT---------------------------------------------------------CACAGCAAC------------------------------------GGCGCCT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCCACGACCACGGGTCAGCAGCAGCAGCAGCAT------CCGGAACTGGACATTGAGAA---CATGTCGCCGAGCAAGCGGCGTCGTCTGCTCAGCGAAACGGAGGAGTACATCGAGTATCTGCGCAACAAAGAGGACATTACTCTGACCATTGCCCCCAAGGTGCAG---------------CAA---CCGC-----------------------------------------------------C---GC---------------------CGGCG---------------ACATCGCTGCTGAAGCGCCAGTTGGATCTCAGCGTACCGCGACGGAGTCCCAAAAAGGC---GGCTCCGGCT---------------------------------------------------------CACAGCAAC------------------------------------AGCG---	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCCACCACAACGGGCCAGCAGCAGCTGCC------------GG---TGGACATTGAGAA---CCTGTCGCCCAGCAAGCGTCGGCGTCTGCTCAGCGAGACCGAAGAGTACATTGAGTATCTGCGGAACAAGGAGGACATCACCTTGACCATAGCACCAAAGGTACCG---------------CGACCCACAT-----------------------------------------------------C---G------------------------------------------CCGTCGCTGCTCAAGCGTCAGCTGGATCTGACTGCGCCACGTCGCAGTCCCAAGAAGGC---GCCACCGCCT---------------------------------------------------------CCGGCCAAC-------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GCCACCACCACTGGCCAGCAGCAGCAGCAG---------TTGGATGCCGCCATCGAGAA---CCTGTCGCCGGGGAAGCGCCGTCGGCTACTCAGCGAAACGGAGGAGTACATCGAGTATCTGCGGAACAAGGAGGACATCACGCTGACCATTGCACCCAAGGCCCAG------------CAGCCA---TCGC-----------------------------------------------------C---GC---------------------CACAG---------------ACATCGCTGCTGAAGCGTCAGCTCGACTTGTCCGTCCCCAGGCGGAGTCCCAAGAAGGC---TGCTCCGGCC---------------------------------------------------------CACAACCAC---------------------------------TCCAGTG---	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............GGCCAGCAGCAGCAGCAG---------TT.................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................CAAGGCCCAG------------CAGCCA---TCGC-----------------------------------------------------C---................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................TCGACTTGTCCGTCCCCAG............................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...................AGCAGCAGCAG---------TTGGATGCCGCCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.....................CAGCAGCAG---------TTGGATGCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................GTCCCAAGAAGGC---TGCTCC.................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................TATCTGCGGAACAAGGAGGACATC.............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
................................................GCCATCGAGAA---CCTGTCGC....................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................TGAAGCGTCAGCTCGACTTGTCCGT..................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0

droBip1

GCCACCACCACGGGCCAGCAGCAGCAGCAGCAGCAGCAGTTGGATGCGGCCATTGAGAA---CCTGTCGCCGAGCAAGCGGCGTCGTCTGCTCAGCGAAACGGAGGAGTACATCGAGTATCTGCGCAACAAGGAGGACATCACGCTGACCATTGCACCCAAGGCCCAG------------CAGCCA---TCGC-----------------------------------------------------C---GC---------------------CACAG---------------ACCTCGCTGCTCAAGCGACAGCTGGACTTGTCCGTCCCGCGTCGAAGCCCCAAGAAGGC---GGCTCCGGCC---------------------------------------------------------CACAACAAT------------------------------------GGCA---	Size	Hit Count	Total Norm	Total
No Reads

dp5

GCCACCACCACGGGCCAGCAGAGACAGCT------------GGATC------TGGACCA---CCTGTCGCCGAGCAAGCGTCGCCGACTGCTTAGCGAGACTGAGGAGTACATTGAGTATCTGCGCAACAAGGAGGACATCACCCTGACCATTACACCCAAGGCGC-----C-CACAGTGAAGTCC---TCGC-----------------------------------------------------CAC---------------CCCAGCCGCCTGCT---------------TCGTCCCTCCTGAAGCGTCAGCTGGATCTGGCGGTGCCTCGCAAGAGTCCAAAAAAGGC---TTCCCCAGCC---------------------------------------------------------CACAGCCACAGCCATAGCCACAGCCAGGCTGCTATTTCCAACGGCCACA---	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................................................................................................................................................................................................................................................T---------------TCGTCCCTCCTGAAGCGTCAGCT..............................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

GCCACCACCACGGGCCAGCAGAGGCAGCT------------GGATC------TGGACCA---CCTGTCGCCGAGCAAGCGTCGCCGACTGCTTAGCGAGACTGAGGAGTACATTGAGTATCTGCGCAACAAGGAGGACATCACCCTGACCATTACACCCAAGGCGC-----C-CACAGTGAAGTCC---TCGC-----------------------------------------------------CAC---------------CCCAGCCGCCTGCT---------------TCGTCCCTCCTGAAGCGTCAGCTGGATCTGGCGGTGCCTCGCAAGAGTCCAAAAAAGGC---TTCCCCAGCC---------------------------------------------------------CACAGCCACAGCCATAGCCACAGCCAGGCAGCTATTTCCAACGGCCACA---	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................CGCCGACTGCTTAGCGAGACTGAGGA...............................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
.....................................................................CCGAGCAAGCGTCGCCGACT.................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0

droWil2

GCCACGACAACGGGCCAACAGGAGGTGGT------------AGAA------------------CCATCGCCCCAAAAGCGCCGTCGATTGCTTAGCGAAACGGAGGAGTACATAGAATATTTGCGTAACAAAGAGGATATCACTTTGACCATAACACCCAAATTGTCAGGTCCGCCCATGAAGACA---TCGCCTCC---AACCCCAATA------GCTTC--------------------------------TACTCTTCCTCCTCAATCACCACAGACATCATCAGGAGCCAGCTCTCTGCTCAAACGACAACTGGATTTGTCTGCGCCCCGGAAAAGTCCTAAAAAGAA---CGCCCCACTA---------------------------------------------------------AGCACTACC------------------------------------AACT---	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................................................................................................................................................................................................................................CTGGATTTGTCTGCGCCCCGG...........................................................................................................................................	21	1	2.00	2	2	0	0	0	0
...............CAACAGGAGGTGGT------------AGAA------------------CCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................CCACAGACATCATCAGGAGCC.....................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
..............................................................................................................................AACAAAGAGGATATCACTTT........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.................................................................................................................AGAATATTTGCGTAACAAAGAGGATAT..............................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
.........................................AGAA------------------CCATCGCCCCAAAAGCGCC........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................CTGGATTTGTCTGCGCCC..............................................................................................................................................	18	1	1.00	1	1	0	0	0	0
..................................................................................................................................................................TTGTCAGGTCCGCCCATGAAGA..................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1
.....................................................................................................................................................................TCAGGTCCGCCCATGAAGACA---TCGCC........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
.........................................................................................................................TGCGTAACAAAGAGGATATCACTT.........................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1
..............................................................................................................................AACAAAGAGGATATCACTTTGACC....................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CCGGAAAAGTCCTAAAAAGAA---CGCCCC.................................................................................................................	27	1	1.00	1	1	0	0	0	0

droVir3

GCGACAACAACAGGTCAGCAGCGGGAGCG------------AGAGCGTGAACGTGAGCAAACGTTGTCGCCCAGCAAGCGGCGACGCCTGCTGAGCGAGACCGAGGAGTACATAGAGTATCTGCGCAACAAGGAGGATATCACGCTTACCATAACGCCCAAGGTGC-----C-TAACA--------------GCAGCAGCAGCAATAACA------G---------TGCGCCGTTAAAGTCAACTGCAGCGCCGGCTTTACAGC---------C---G---------------CAGTCGCTGCTCAAACGTCAGCTGGATCTGGCAGCACCACGAAAAAGTCCCAAGAAAGTACCAGTAGTAAATCAAAATGCCCTCAACAACAGTAGCATTAC------------------------------CAACAACATCAATGGCAACAGCAACG---------CCAGCAGCAGCG---	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCAATGGCAACAGCA...........................	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......CAACAGGTCAGCAGCGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TGCTCAAACGTCAGCTGGATCTGGC.....................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AATAACA------G---------TGCGCCGTTAAA............................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................GAGACCGAGGAGTACATAGAGT....................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................GCTCAAACGTCAGCTGGATCTGGCAGCA.................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................GCCCTCAACAACAGTAGCATTAC------------------------------C.................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CAGTAGCATTAC------------------------------CAACAACC..........................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................CACGAAAAAGTCCCAAGAAAGTACCAG.....................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................AGAGTATCTGCGCAACAAGGAGGATATC.............................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................G------------AGAGCGTGAACGTGAGCAAACGTTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................GAGCAAACGTTGTCGCCCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................AACAAGGAGGATATCACGC.........................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................ATCTGCGCAACAAGGAGGATATCACGCT........................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................AGCG------------AGAGCGTGAACGTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GAGCG------------AGAGCGTGAACGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACG---------CCAGCAGCAGC....	19	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCAACTACGACGGGCCAGCAGCAG---------------------------------------TTGTCGCCCGGCAAGCGGCGACGTCTGATGAGCGAGACCGAGGAGTATATTGAGTATCTGCGCAACAAGGAGGACATTACACTGACCATAACACCCAAGGTGC-----C-TACCG--------------GCAGCAGCAACAGCAACA------GCAGCAGCGCTGCGCCGCCAAAGTTAACAGTGGCGCCGGCATCGCAGC---------CC------------------CAGTCGCTGCTCAAGCGTCAACTAGATCTGGCAGCACCGCGTAAAAGCCCCAAGAAGCC---GGCTGTTAGTCAACATACTCTTAACAGCAACAGCAGCAGCTGCAACAGCAACATCAATAACAGCCCCAATAACAGC------------------------------------AGCG---	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................................................................................................................TTGAGTATCTGCGCAACAC.......................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
..............CCAGCAGCAG---------------------------------------TTGTCGCCC..................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAGCTGCAACA........................................................................	21	5	0.20	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TAACAGCAACAGCAGCAGC...............................................................................	19	20	0.05	1	0	0	0	0	0	1
..................................................................................................................................................................................................AGCAGCAACAGCAACA------GCAG..............................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0

droGri2

GCGACGACAACCGGCCAGCAGAGAGAGCAGAGAGAGCAAAGAGAGCGAGAACTAGA------GTTAACATACGGCAAGCGACGGCGACTACTGAGCGAGACGGAGGAGTACATTGAGTATCTGCGCAACAAGGAGGACATTACTCTCACCATCACACCAAAGGTGT-----C-CAACA--------------ACAGCAACAACAA---CAGCATTAACAGCAGCAACGCACCGTTAAAATCATTAACAGCGCCGG------------------CGCAG---------------CAGTCGCTGCTTAAACGTCAGCTGGATCTGGCAACACCGCGCAAAAGTCCCAAAAAAGC---AGCAGCAAACCAAAATACCCTCAACAACA------------------------------------------------GCAACAACAACAG---------------CAGCAGCAGCA---	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................TCAACAACA------------------------------------------------GCAACAACAACA..............................	21	20	0.10	2	2	0
...............................................................................................................................................................................ACA--------------ACAGCAACAACAA---CAGCA.....................................................................................................................................................................................................................................................................	21	20	0.10	2	2	0
.......................................................................................................................................................................................................................................................................................................................................................................................TCAACAACA------------------------------------------------GCAACAACAACAG---------------CA............	24	13	0.08	1	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------GCAACAACAACAG---------------CAGCAGCA......	22	20	0.05	1	1	0

dsi_20795

2r:11701425-11701574 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-42.4	-42.2	-42.1