ID:

dsi_20782

 Coordinate:

x:2369370-2369519 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCCGAAACGCGTCGATCACATATCTGTAAATACGAACGCTTCCTCTGTATCCTCGTTTGTGTCCTGTCCATATCTACGATGATTGCCTCACTGCCCGCCCCTTTTGCCCTCCAGCCCAATTCTGTCCCGCAAGAGAGTCCGTGCCAAGATATCCGGTGGTAAAAAACGCTGCTTAACCGAATGCTTCTCCCACTCCATAGGTTTTCCGTATACGCACTCCTACAGAAGCTATCAACTTGGTGTCCCTGCT
**************************************************..((((..((((.......))))..)))).............((.((...(((((((....(((.......)))....)))))))....)).)).(((.(((.((((((((........))))..)))).))))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
...........................................................................................................................................................................................................................CTACAGAAGCTATCAACTTGGT......... 22 0 1 1.00 1 0 0 1 0 0
.............................................TGTATCCTCGTTTGTGTCCT......................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................CGCAAGAGAGTTCGT............................................................................................................ 15 1 1 1.00 1 0 1 0 0 0
.........................................CCTCTGTATCCTCGTTTGTGTCCT......................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
........................................................................................................................TCGGTCCCGCTAGAGA.................................................................................................................. 16 2 8 0.50 4 0 3 0 1 0
...................................................................................................................................................................................AATGCTTCTCCCCCTCC...................................................... 17 1 2 0.50 1 0 0 0 1 0
...............................................TATTCTCGTTTGTGTCCA......................................................................................................................................................................................... 18 2 7 0.29 2 0 2 0 0 0
...............................................................CTGTCCCTATCTACGA........................................................................................................................................................................... 16 1 5 0.20 1 0 0 0 1 0
.......................................................................................................................TTCGGTCCCGCTAGAGAC................................................................................................................. 18 3 17 0.06 1 0 1 0 0 0
...............................................................................................................................CGCAAGAGAGTTCGTC........................................................................................................... 16 2 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

AGGCTTTGCGCAGCTAGTGTATAGACATTTATGCTTGCGAAGGAGACATAGGAGCAAACACAGGACAGGTATAGATGCTACTAACGGAGTGACGGGCGGGGAAAACGGGAGGTCGGGTTAAGACAGGGCGTTCTCTCAGGCACGGTTCTATAGGCCACCATTTTTTGCGACGAATTGGCTTACGAAGAGGGTGAGGTATCCAAAAGGCATATGCGTGAGGATGTCTTCGATAGTTGAACCACAGGGACGA
**************************************************..((((..((((.......))))..)))).............((.((...(((((((....(((.......)))....)))))))....)).)).(((.(((.((((((((........))))..)))).))))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 O002
Head
 M024
male body		 M053
female body
 SRR1275487
Male larvae		 SRR1275483
Male prepupae		 M023
head
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR1275485
Male prepupae		 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR902009
testis
.....................................................................................GGAGTGATGGGCTGGGAA................................................................................................................................................... 18 2 3 1482.00 4446 2624 763 119 456 233 76 10 131 5 14 4 5 4 0 0 2
...................................................................................CCGGAGTGATGGGCTGGGAA................................................................................................................................................... 20 3 3 247.33 742 0 0 480 102 3 0 150 1 0 0 0 0 0 0 6 0
.....................................................................................GGAGTGATGGGCTGGGAAT.................................................................................................................................................. 19 3 11 173.27 1906 825 253 105 190 367 114 9 27 1 10 0 0 4 0 0 1
......................................................................................GAGTGATGGGCTGGGAAT.................................................................................................................................................. 18 3 20 139.05 2781 1133 335 140 527 434 127 19 25 1 32 1 2 5 0 0 0
......................................................................................GAGTGATGGGCTGGGAA................................................................................................................................................... 17 2 8 134.50 1076 0 0 0 0 684 237 0 79 4 54 5 11 0 2 0 0
....................................................................................CGGAGTGATGGGCTGGGAA................................................................................................................................................... 19 2 1 25.00 25 0 0 0 14 7 0 0 2 0 1 1 0 0 0 0 0
...................................................................................CCGGAGTGATGGGCTGGGA.................................................................................................................................................... 19 3 7 16.57 116 0 0 68 26 1 0 21 0 0 0 0 0 0 0 0 0
..................................................................................CAGGGAGTGATGGGCGGGGAA................................................................................................................................................... 21 3 3 14.67 44 0 0 33 0 0 0 11 0 0 0 0 0 0 0 0 0
...................................................................................CGGGAGTGATGGGCGGGGAA................................................................................................................................................... 20 3 9 14.44 130 0 0 79 37 0 0 12 0 0 0 0 1 1 0 0 0
...................................................................................CGGGAGTGACGGGCTGGGAA................................................................................................................................................... 20 3 5 13.80 69 0 0 25 33 2 0 7 1 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................GAGGATGTCATCGATGGT................ 18 2 2 13.50 27 0 0 0 0 0 0 0 0 20 0 4 2 0 1 0 0
.......................................................................................AGTGATGGGCTGGGAA................................................................................................................................................... 16 2 18 13.06 235 0 0 0 0 77 21 0 98 7 3 22 5 0 2 0 0
...................................................................................AGGGAGTGATGGGCTGGGAA................................................................................................................................................... 20 3 3 10.67 32 0 0 21 5 5 0 1 0 0 0 0 0 0 0 0 0
..................................................................................CAGGGAGTGACGGGCTGGGAA................................................................................................................................................... 21 3 2 9.50 19 0 0 18 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................CCGGAGTGATGGGCGGGGAA................................................................................................................................................... 20 2 1 4.00 4 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................CGGAGTGATGGGCTGGGA.................................................................................................................................................... 18 2 2 3.50 7 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TTCCGGAGTGATGGGCGGGGAA................................................................................................................................................... 22 3 2 3.50 7 0 0 5 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................AAGGGAGTGATGGGCTGGGAA................................................................................................................................................... 21 3 2 3.00 6 0 0 2 1 0 0 2 0 0 0 0 0 0 0 1 0
.................................................................................TCCGGGAGTGACGGGCGGGGAA................................................................................................................................................... 22 3 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CCGGAGTGACGGGCTGGGAA................................................................................................................................................... 20 2 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CCGGGAGTGACGGGCGGGGAA................................................................................................................................................... 21 3 6 1.67 10 0 0 8 0 0 0 0 0 0 0 0 0 2 0 0 0
..................................................................................CCCGGAGTGATGGGCGGGGAA................................................................................................................................................... 21 3 2 1.50 3 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................CGGAGTGATGGGCTGGGAAT.................................................................................................................................................. 20 3 4 1.00 4 0 0 0 2 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................TAAGGGAGTGATGGGCTGGGAA................................................................................................................................................... 22 3 2 1.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
......................................................................................GAGTGACGGGCTGGGAA................................................................................................................................................... 17 1 2 1.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TTCCGGAGTGACGGGCTGGGAA................................................................................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CCGGAGTGAGGGGCTGGGAA................................................................................................................................................... 20 3 3 1.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ACAGCGCGTTCTGTCAGGGA............................................................................................................ 20 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................TCCCGGAGTGATGGGCGGGGAA................................................................................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TACGGAAGTGACGGGCGGGGAA................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................TCCCGGAGTGACGGGCTGGGAA................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................CCCGGAGTGACGGGCTGGGAA................................................................................................................................................... 21 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................GGGAGTGACGGGCTGGGAA................................................................................................................................................... 19 2 2 1.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.....TGGCGCAGCTAGTGTAT.................................................................................................................................................................................................................................... 17 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................GAGTGATGGGCGGGGAA................................................................................................................................................... 17 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TCCCGGAGTGACGGGCTGGGA.................................................................................................................................................... 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................GAGTGACGGGCTGGGAAT.................................................................................................................................................. 18 2 2 1.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................ACGGAGTGATGGGCTGGGAA................................................................................................................................................... 20 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CAGGGAGTGACGGGCTGGGA.................................................................................................................................................... 20 3 5 1.00 5 0 0 4 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGAGGATGTCATCGATGGTGG.............. 21 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................GGAGTGATGGGCGGGGAA................................................................................................................................................... 18 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TCCCGGAGTGATGGGCGGGGA.................................................................................................................................................... 21 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CAGGGAGTGATGGGCGGGGA.................................................................................................................................................... 20 3 6 0.83 5 0 0 3 0 0 0 2 0 0 0 0 0 0 0 0 0
................................................................................................................................................GTTCTCTAGGCAACAATTTT...................................................................................... 20 3 7 0.71 5 0 0 0 0 0 0 1 0 0 0 0 4 0 0 0 0
..................................................................................ACGGGAGTGACGGGCTGGGAA................................................................................................................................................... 21 3 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GGGTGCGGATGTCTTC...................... 16 2 20 0.65 13 0 0 0 0 0 0 0 0 13 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ATGAGGATGTCATCGATGGT................ 20 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................TGGGTGCGGATGTCTTC...................... 17 2 14 0.50 7 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AGAGGATGTCATCGATGGT................ 19 3 10 0.50 5 0 0 0 0 0 0 0 0 1 0 2 1 0 1 0 0
...................................................................................CCGGAGTGAAGGGCGGGGAA................................................................................................................................................... 20 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CCGGAGTGATGGGCGGGGAAT.................................................................................................................................................. 21 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...CGTCGCTCAGCTAGTGTATAG.................................................................................................................................................................................................................................. 21 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................ACCGGAGTGATGGGCTGGGAA................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CACGGAGTGATGGGCTGGGAA................................................................................................................................................... 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................AGGAGTGATGGGCTGGGAA................................................................................................................................................... 19 3 5 0.40 2 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................GGGAGTGATGGGCTGGGAAA.................................................................................................................................................. 20 3 8 0.38 3 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................CCGGGGTGACGGGCTGGGAA................................................................................................................................................... 20 3 6 0.33 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GGAGTGATGGGCGGGGAAT.................................................................................................................................................. 19 2 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GAGGATGTCATCGATTG................. 17 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................GGGAGTGACGGGCTGGGAAT.................................................................................................................................................. 20 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................TCCGGAGTGATGGGCGGGGAA................................................................................................................................................... 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GGAGTGATGGGCTGGGAAAC................................................................................................................................................. 20 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................TCCGGAGTGAGGGGCGGGGAA................................................................................................................................................... 21 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................TCCGGAGTGATGGGCGGGGA.................................................................................................................................................... 20 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CAGGAGTGACGGGCTGGGAA................................................................................................................................................... 20 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GGAGTGAGGGGCTGGGAA................................................................................................................................................... 18 2 10 0.20 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CCGGCGTGACGGGCTGGGAA................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GGAGTGATGTGCTGGGAA................................................................................................................................................... 18 3 20 0.20 4 0 0 2 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................GAGTGATGGGCTGGGAAA.................................................................................................................................................. 18 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CCACAAGGGATATGCGT.................................. 17 2 10 0.20 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
....................................................................................CGGAGTGATGTGCTGGGAA................................................................................................................................................... 19 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................AGTGATGGGCGGGGAAT.................................................................................................................................................. 17 2 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................AAGGGAGTGACGGGC......................................................................................................................................................... 15 1 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................GGAGTGATGGGCCGGGAA................................................................................................................................................... 18 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GGAGTGATGGGCCGGGAAT.................................................................................................................................................. 19 3 14 0.14 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CGGGAGTGACGGGCAGGGAA................................................................................................................................................... 20 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................GGGAGTGACGGGCTGGGA.................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................CAGGAGTGACGGGCTGGGA.................................................................................................................................................... 19 3 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................TCGGAGTGATGGGCTGGGA.................................................................................................................................................... 19 3 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................GGTTCTATAGGCAAC............................................................................................ 15 1 9 0.11 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................CCGGAGTGAGGGGCTGGGA.................................................................................................................................................... 19 3 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CTCGGATCTATAGGCAAC............................................................................................ 18 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0
..............................................................GGACGCGTATAGATGCT........................................................................................................................................................................... 17 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................ACCCAGGACAGGTATTG................................................................................................................................................................................ 17 2 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................ACGGGGTGATGGGCTGGGAA................................................................................................................................................... 20 3 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CTCGGTTCTATAGGCAA............................................................................................. 17 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................GGTTCTCTAGGCAACAATT........................................................................................ 19 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................AAACGGCATATGAGTGA................................ 17 2 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................AGGGCGGGTTAAGGCATGG.......................................................................................................................... 19 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...................................................................AGTATCGATGCTACTA....................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................TCGGTTCTATAGGCAACG........................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................ACGGGGTGATGGGCTGGGA.................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CTGGAGTGACGGGCTGGG..................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AGGAAGGCTTCGATAG................. 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGGGTGCGGATGTCTTCA..................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................GGATTGATGGGCTGGGAA................................................................................................................................................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GTAGTGATGGGCTGGGAA................................................................................................................................................... 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GAGGATGTCATCGATGGTG............... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:2369320-2369569 + dsi_20782 TCCGAAA-----------------------------CGCGTCG---------AT-------CACATATCTGTAAATACGAACG--CT----TCCTCT--GTATCC------TCGTTTGTG------TCC----------TGTCC-ATATCT------ACGATGA---TTGCCT---CACTGCCCG-------CCCCTTTT-------------------------------G----------------CC---CTCCAGC----------------CCAATTCT-------------------GTCCCGCAAGAGAGTC---CGTG--C--------CAAGATATCCGGT---GGTAAAAA------------------------A------------CGCTG-----------------CT-------TAACCGAATG-------CTTCT----C--CCA-CTCCATAGGTTTTCCGTATACGCACTCCTACAGAAGCTATCAACTTGGTGTCCCTGCT
droSec2 scaffold_307:9656-9922 + TCCGAAT-----------------------------CGCGTCG---------AT-------CAAATATCTGTAAATACGAACG--CT----TAATCT--GTGTTC------TCGTTTGTG------TCC----------TGTCC-ATATCT------ACGATGA---TTGCGT---CACTGCCCG-------CCCCTTTT-------------------------------G----------------CC---CTCCAGC----------------CCAATTCTGTCCCACCAAAT-TGTTGAGTCCCGCACGAAAGTC---CGTG--C--------AAAGATGTCCGGT---GGTTGAAA------------------------A------------CGCTA-----------------CT-------TAACCGAATG-------CTCCT----C--CCA--CTCACAGGTTTTCCGTATACGCACTCCTACAGAAGCTATCAACTTGGTGTCCCTGCT
dm3 chrX:2566756-2566996 + C-----------------------------------------G---------AT-------CA--AATCTGTAAATACGAACG--CT----TCCTCT--GTGTTC------TCGTTTGTG------TCC----------TGTCC-ATATCT------ACGATGA---TTGCCT---CACTGCCCG-------CCCC-GCC--------------------------C-------------CCCTTTTGCC---CACCAGC----------------CCAATTCT-------------------GTCCCGCAAGAAAGTC---AGTG--C--------AAAGATGTCAGAT---GGTT-AAA------------------------A------------CGCCA-----------------CT-------TAACCGAATG-------CTCCT----T--TCA--CACACAGGTTTTCCGTATACGCACTCCTACAGAAGCTATCAACTTGGTGTCCCTGCT
droEre2 scaffold_4644:2511999-2512234 + TCCGAAA-----------------------------CAGGACG---------AT-------CA--AGTCTGTAAATACGAACGCGCT----TCCTCT--GTGTTC------TCGTTTGTG------TCC----------TGTCC-ATTTCT------ACGATGA---TTGCCT---CACCGCCCG-------CCCCTGTT-------------------------------G----------------CTGAACTCCTTC----------------CCAAT------------------------CCCCCA---------------------------AAGATGTCTGGT---GAT-GAAC------------------------A------------CGCAA-----------------TT-------TAACCCAATTTGAT---CTACT----C--CCG--CTCACAGGTTTTCCGTATACGCACTCCTACAGAAGCTATCAACTTGGTGTCCCTGCT
droYak3 X:5786084-5786380 - TGCGAAA-----------------------------GAGAACG---------AT-------CA--AATCTGTAAATACGAACG--CT----TCCTCT--GTGTTC------TCGTTTGTG------TCC----------TGCCC-AATTCT------CCGATGA---TTGCCT---CACCGCCCG-------TCCCTGTT-----------------------GCCCAATTGCCCTGTTGCCCTTTTGAC---CTATTGA----------------CCAATTGTGTCCCGCCTAGT-TGTTAAGTCCCGCAAGAAAGTC---CGTGACC--------ATCTTTGCATGGTGGCGAT-GAAA------------------------A------------CATTA-----------------TC-------TAACCTAATGTCAA---CTTCT----C--CCA--CTCGCAGGTTTTCCGTATACGCACTCCTACAGAAGCTATCAACTTGGTGTCCCTGCT
droEug1 scf7180000408994:10297-10555 - CCAAGG--------------------ATAACCCTAACAGGACC---------TT-------CC--AATCTGTAAATACGAACGC-GC----TTCTCC--GTGTCC------TGAC-----------------------------------------------GT---TTGCCTTGTTACTGCC-----C-CGCCCTTCTC-------------------------------G----------------CC---CT-TTGA----------------T---CTGTGCCCCGCCCAGT-TGTTGTGTCCCGCAAGAAGCTC---CGCT--CG-------AAAGA--------------------AAACTTAACTATGAGTAAAAATAA------------CA---CC--------------TA-------GTAACCGGTTA-------CTCCC----A--CCC--CTCGCAGGTTTTCCGTATACGCACTCCTACAGAAGCTATCAACTTGGTGTCCCTGCT
droBia1 scf7180000302069:201498-201813 + TTTGAAGTACATTAATCTTTCCATTTAAAACTGAAAAAAATTT---------GTGAAAATTCA--CGTCTGTAAATATAAAAG--CT----TCCCCT--GTGCTA------TCAAGTGTG------T-C----------TGTCC-AATTCA------ATGATGATTACTGCGT---TACTGCCA------CGC-CCTGTT-----------------------GCCCCGTTGCCTAGATGC-----------------------------------CTTTTTGAGACCCGCCCAGT-TGATGTGTCCCGCAAGAAGCTC---CGAC--T--------CAAAATGTTTGGT---G----AAA------------------------G------------CACAACT--------------CA-------CTAACTGGATT-------TTCCTTCCTACTCC--TATCGTAGGTTTTCCGTATACGCACTCCTACAGAAGCTATAAACTTGGTGTCCCTCCT
droTak1 scf7180000415704:903656-903830 + GCTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTGCC-----C-CGA-TATGT------------------------------------------------------------------------------------TGCCCCGCCCTGTTTGTTGTGTCCCGCAAGAAGCTC---CGCT--C--------GAAAATGCCTGGC---GA----AG-------------ACATCA-AAACA------------CA---CC--------------CA-------CTAACCCACTA-------CTCCTTCC-T--CC--CTCTGCAGGTTTTCCGTATACGCACTCCTACAGAAGCTATCAACTTGGTGTCCCTGCT
droEle1 scf7180000491001:825377-825657 + TAAAT---AT---AATTAT----GCGAAAACCGAAACAGGTCC---------TT-------GA--GTTCTGTAAATACGAACG--CT----TCCTCTGCGTGTTC------ACACTTGTG------TGC----------TGTCCCATTTCG------ATGATGA---TTGCGTTTTTACAGCC-----C-CGCCCCAGTT-------------------------------G----------------TC---CAGTTGC----------------TCCAATGTGTCCCGCCCAAT-TGTTGAGTCCCGCAT----------------C--------CAAGATGTCTGGT---T----AAGATTAA-------------------A------------TA---CA--------------TA-------CTAATTGAATA-------CCTAT----A--CTG--CCCGCAGGTTTTTCGTATACGCACTCCTACAGAAGCTATCAACTTGGTGTCCCTGCT
droRho1 scf7180000779976:653039-653311 + TCTCCAACACATAAATTAT----GTGAAAACCGAAACAGATCC---------AT-------TG--AAACAGTAA--CCCAACG--CT----TTCTCT--GTGTCC------TCACTTGTG------TAC----------CGTCC-ATTACC--G---ATGATGA---TTAC-T---TACTGCC-----C-CGCCCCAGTT-------------------------------G----------------TC---CAGTTGC----------------TCGATTGAGTCCCGCCCAGT-TGTTGAGTGCCGCAAG----------------------------ATGTGTGC------TT-AAAACTAC-------------------C-----------------TC--------------CA-------CTAACTGGATA-------CTCCT----C--CCA--CCCGCAGGTTTTCCGTATACGCACTCCTACAGAAGCTATCAACTTGGTGTCCCTGCT
droFic1 scf7180000454072:2494968-2495261 + TGTGAAA----------------------CCCGCAACTG--GAGGAAGGTCCCA-TGA----A--CTTGTGTAAATACGAACG--CT----TCCTCT--GTGCTC------TCACCTGTGTTCTGTGCCCTGTGTCCTCTGTCC-AA--------------TCA---ACTTGC---AACTGCATC-------GA---GTT-----------------------GCCCCATCCT--TCACCTC------AC---CTTCTGGCCAG-----------------CGAGTCCCGTCCCGT-TTTTTTGTTTTGAGAGAAGCTC---CCTGT-CG-------CAGGA--------------------TCAC-------------------G------------TG---CC--------------CA-------CTGACCGAGTT-------GTCTCGCC-C--TC--CTCCGCAGGTTTTCCGTATTCGCACTCCTACAGAAGCTATCAACTTGGTGTCCCTGCT
droKik1 scf7180000302344:720276-720589 - GCGAGGA-----------------------------TCCTTGA---------GG-------CGTTTGTCTGTCTCTCTT-TCGC-TT----TCCTCT--GTGCCC------TATTTTTTG------TCC----------TGTCC-AAATTGCCAATGATGATGA---TTGCGT---TACTGTACTGCCCCCGC-CCTGTT-------------------------------GT--CCCGCTG------AC---CTGTTGTTGTC------------CATGTTCTGTCCCGCCCTGT-TTTT--GTCCTGCAACAAGATGCTCCTCC--C--------ACGGA--------------------CGATTTGCCCAGGAATGC-GCACACACACACACACACACTG-----------------ATTGATCTCTTGCTCC----------GTTCT----T--CC--TCCCACAGGTTTTCCGTATACGCACTCCTACAGAAGCTATCAACTTGGTGTCCCTGCT
droAna3 scaffold_12929:2573196-2573400 + CTCAAGC-----------------------------CATATAA---------GA-------AATGTCCTTGTAAATATGAAAG--CT----TCCTCT--GTGTTC-TGTTGTCACTTGTG------TCC----------TGTCC-TT----------------------------------------------------T-------------------------------G----------------TC---CCGTTGC----TCCTTCTCCCCCTAAATCCC-------------------CCCCCGGAAGAGACTG---CTTA--C-TAATCTA----------------------------------------------------------------------------------------------TTTGGAT-----------------GTCCT--TTGAACAGGTTTTCCGTATACGCACTCCGACAGAAGCTATCAACTTGGTGTCCCTGCT
droBip1 scf7180000396434:564058-564269 + TTCAG-C-----------------------------CATTTAG---------GA-------AATATTCTTGTAGATATGAATC--CTTGTTCTCTTT--GTTTTC------TCACTTGTAAGCTAGTCC----------TGTTT-GTCTCT-----------------------------GTC-----C-CGTCCCG----------------------------------------------------C---CAGTTGC----TCCTTCTC----CTACTCCT-------------------CCTCTGCTAGACCAT----TTTA--C-TAATCCT----------------------------------------------------------------------------------------------TTT-GAT-----------------G---T--CCTTGTAGGTTTTCCGTATACGCACTCCGACAGAAGCTATCAACTTGGTGTCCCTGCT
dp5 XL_group1a:6262067-6262147 - T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCCGATC----ATTCTCCT----G--CGACTCCCACAGGTTTTCCGTATACGCACTCCGACAGAAGCTATCAACTTGGTGTCCCTGCT
droPer2 scaffold_3166:3758-4007 - T--------------------------------------------------------------------------------------------------------------------GTG------TCC----------TGTCC-T--CCA------GCGATGA---TTGTGC---TACTACCCA-------GTCCTGC--------------------------CCCAGCTCCGCCATGTC------TT---GTTCTGTCCTGC-----------CGATTCGAGTTCTGTTTCTGTTGTTTTTCCTCGTGAGA--TTT---GCCG--C-CAATCCA------GTCAAGT---GTCCCCAA------------------------A------------CGCCACCCAGCAGTCGGCAATCA-------CTAATGCGATC----ATTCTCCT----G--CGACTCCCACAGGTTTTCCGTATACGCACTCCGACAGAAGCTATCAACTTGGTGTCCCTGCT
droWil2 scf2_1100000004909:9035288-9035350 - TCCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCATAGGTTTTCCGCATACGCACTCCGACAGAAGCTATTAATTTGGTATCTCAACT
droVir3 scaffold_12970:8504075-8504129 - ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAGGTTTTCCGTATACGCACTCCGACAGAAGCTATCAACTTGGTGTCGCAGCT
droMoj3 scaffold_6482:746558-746799 + TCTGC-------------------------------CGCCTCG---------GG-------GATAGATATGTATATAT-------------CTCTAT--GTGTATCC----GTATATTTG-------------------TATTT-ATATTT------ATT--TT---TCGCTT---T--------------------GTCGCCCTTCAATGCCGTGTCCTGTTCTGACTCTGCC----------------------------------------------------CCTACCCAAG-TGAAGA---------------C---AGCT--G--------AGTGATGCT---------------------------------------------------------GC----CGCTGCCGATGATTGCATTCTAATTTGATT-------CT-------GGCCA--TTCCACAGGTTTTCCGTATACGCACTCCGACAGAAGCTATCAACTTGGTGTCGCAGCT
droGri2 scaffold_14853:7982432-7982489 + C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCACAGGTTTTCCGTATACGCACTCCGACAGAAGCTATCAACTTGGTGTCGCAGCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCCGAAA-----------------------------CGCGTCG---------AT-------CACATATCTGTAAATACGAACG--CT----TCCTCT--GTATCC------TCGTTTGTG------TCC----------TGTCC-ATATCT------ACGATGA---TTGCCT---CACTGCCCG-------CCCCTTTT-------------------------------G----------------CC---CTCCAGC----------------CCAATTCT-------------------GTCCCGCAAGAGAGTC---CGTG--C--------CAAGATATCCGGT---GGTAAAAA------------------------A------------CGCTG-----------------CT-------TAACCGAATG-------CTTCT----C--CCA-CTCCATAGGTTTTCCGTATACGCACTCCTACAGAAGCTATCAACTTGGTGTCCCTGCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAGAAGCTATCAACTTGGT.........2211.00100000000000100000
................................................................................................T--GTATCC------TCGTTTGTG------TCC----------T............................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
............................................................................................CCTCT--GTATCC------TCGTTTGTG------TCC----------T............................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
droSec2
TCCGAAT-----------------------------CGCGTCG---------AT-------CAAATATCTGTAAATACGAACG--CT----TAATCT--GTGTTC------TCGTTTGTG------TCC----------TGTCC-ATATCT------ACGATGA---TTGCGT---CACTGCCCG-------CCCCTTTT-------------------------------G----------------CC---CTCCAGC----------------CCAATTCTGTCCCACCAAAT-TGTTGAGTCCCGCACGAAAGTC---CGTG--C--------AAAGATGTCCGGT---GGTTGAAA------------------------A------------CGCTA-----------------CT-------TAACCGAATG-------CTCCT----C--CCA--CTCACAGGTTTTCCGTATACGCACTCCTACAGAAGCTATCAACTTGGTGTCCCTGCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
C-----------------------------------------G---------AT-------CA--AATCTGTAAATACGAACG--CT----TCCTCT--GTGTTC------TCGTTTGTG------TCC----------TGTCC-ATATCT------ACGATGA---TTGCCT---CACTGCCCG-------CCCC-GCC--------------------------C-------------CCCTTTTGCC---CACCAGC----------------CCAATTCT-------------------GTCCCGCAAGAAAGTC---AGTG--C--------AAAGATGTCAGAT---GGTT-AAA------------------------A------------CGCCA-----------------CT-------TAACCGAATG-------CTCCT----T--TCA--CACACAGGTTTTCCGTATACGCACTCCTACAGAAGCTATCAACTTGGTGTCCCTGCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................AGTG--C--------AAAGATGTCAGAT---GGTT-..................................................................................................................................................................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000010000010000000000000000000000000000000000000000000100001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGCACTCCTACAGAAGCTATCAACT.............2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................GTC---AGTG--C--------AAAGATGTCAGAT---GGT....................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCCGTATACGCACTCCTACAGAAGC.....................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................T----TCCTCT--GTGTTC------TCGTTTGTG------TCC----------TG...........................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAACTTGGTGTCCCTGCT2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGCACTCCTACAGAAGCTATCAAC..............2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................G-------CCCC-GCC--------------------------C-------------CCCTTTTGC...............................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGAAGCTATCAACTTGGTGTCCC....2612.0020000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................AGTG--C--------AAAGATGTCAGAT---GGTT-A.................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGCACTCCTACAGAAGCTATC.................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAAGCTATCAACTTGGT.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAAGCTATCAACTTGGTGT.......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGAATG-------CTCCT----T--TCA--CACACAG..................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTACAGAAGCTATCAACTTGGTG........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TG------TCC----------TGTCC-ATATCT------ACGATG.....................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCGTATACGCACTCCTACAGAAGC.....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................T-AAA------------------------A------------CGCCA-----------------CT-------TAACCGAATG-------CT........................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................ATCTGTAAATACGAACG--CT----TCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTATCAACTTGGTGTCCCTGCT2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCTACAGAAGCTATCA................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TAACCGAATG-------CTCCT----T--TCA--CACACAG..................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TC---AGTG--C--------AAAGATGTCAGAT---GGT....................................................................................................................................................................2311.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................GTG--C--------AAAGATGTCAGAT---GGTT-..................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTACAGAAGCTATCAACTTGGTGTC......2711.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................C-------------CCCTTTTGCC---CACCAGC----------------CCAATTCT-------------------G........................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTATACGCACTCCTACAGAAGC.....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................GCAAGAAAGTC---AGTG--C--------AAAGATGT...............................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTATCAACTTGGTGTCCCTGC.2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTTGGTGTCCCTGCT1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TC---AGTG--C--------AAAGATGTCAGAT---GGTT-..................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................CCCGCAAGAAAGTC---AGTG--C--------AAAGATT................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TC------TCGTTTGTG------TCC----------TGTCC-ATATC..................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAAGCTATCAACTTGGTGTCC.....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGTTTTCCGTATACGCACTCCT.............................2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................T------ACGATGA---TTGCCT---CACTGCCCG-------CCCC-...................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCCTACAGAAGCTATCAACTTGG..........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACTCCTACAGAAGCTATCAACTTGG..........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................CTCT--GTGTTC------TCGTTTGTG------TCC----------TGT..........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................CG--CT----TCCTCT--GTGTTC------TCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................T-------CA--AATCTGTAAATACGAACG--CG----CT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................T-AAA------------------------A------------CGCCA-----------------CT-------TAACCGAATG-------CTCCT----.................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCTATCAACTTGGTGTCCCTGC.2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................C--------AAAGATGTCAGAT---GGTT-AAA------------------------A------------CGC.......................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................TGTCC-ATATCT------ACGATGA---TTGCCT---C.......................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGAAGCTATCAACTTGGTGTCCCTGC.2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................TTC------TCGTTTGTG------TCC----------TGTCC-ATA....................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................TCTGTAAATACGAACG--CT----TCCTCT--GTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTATCAACTTGGTGT.......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................AGTC---AGTG--C--------AAAGATGTCAGAT---GGT....................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................GCAAGAAAGTC---AGTG--C--------AAAGATGTCA.............................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGCTATCAACTTGGTGTCC.....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGCACTCCTACAGAAA......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTATACGCACTCCTACAGAAGC.....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................G--CT----TCCTCT--GTGTTC------TCGTTTGT.................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.................................................................................................................................................................................................................................................................................................................................................AAAGATGTCAGAT---GGTT-AAA------------------------A------------CGCCA-----------------CT-------...........................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TC---AGTG--C--------AAAGATGTCAGAT---GG.....................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................C---AGTG--C--------AAAGATGTCAGAT---GGTT-A.................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
droEre2
TCCGAAA-----------------------------CAGGACG---------AT-------CA--AGTCTGTAAATACGAACGCGCT----TCCTCT--GTGTTC------TCGTTTGTG------TCC----------TGTCC-ATTTCT------ACGATGA---TTGCCT---CACCGCCCG-------CCCCTGTT-------------------------------G----------------CTGAACTCCTTC----------------CCAAT------------------------CCCCCA---------------------------AAGATGTCTGGT---GAT-GAAC------------------------A------------CGCAA-----------------TT-------TAACCCAATTTGAT---CTACT----C--CCG--CTCACAGGTTTTCCGTATACGCACTCCTACAGAAGCTATCAACTTGGTGTCCCTGCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACGCACTCCTACAGAAGC.....................2211.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTATCAACTTGGTGTCC.....2111.0011000000
droYak3
TGCGAAA-----------------------------GAGAACG---------AT-------CA--AATCTGTAAATACGAACG--CT----TCCTCT--GTGTTC------TCGTTTGTG------TCC----------TGCCC-AATTCT------CCGATGA---TTGCCT---CACCGCCCG-------TCCCTGTT-----------------------GCCCAATTGCCCTGTTGCCCTTTTGAC---CTATTGA----------------CCAATTGTGTCCCGCCTAGT-TGTTAAGTCCCGCAAGAAAGTC---CGTGACC--------ATCTTTGCATGGTGGCGAT-GAAA------------------------A------------CATTA-----------------TC-------TAACCTAATGTCAA---CTTCT----C--CCA--CTCGCAGGTTTTCCGTATACGCACTCCTACAGAAGCTATCAACTTGGTGTCCCTGCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGCACTCCTACAGAAGCTATC.................2411.00100010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGCACTCCTACAGAAGCT....................2111.00100000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACTTGGTGTCCCTGCT2011.00101000000000
................................................................................................................................................................................CACCGCCCG-------TCCCTGTT-----------------------GCCCA....................................................................................................................................................................................................................................................................................................2211.00110000000000
droEug1
CCAAGG--------------------ATAACCCTAACAGGACC---------TT-------CC--AATCTGTAAATACGAACGC-GC----TTCTCC--GTGTCC------TGAC-----------------------------------------------GT---TTGCCTTGTTACTGCC-----C-CGCCCTTCTC-------------------------------G----------------CC---CT-TTGA----------------T---CTGTGCCCCGCCCAGT-TGTTGTGTCCCGCAAGAAGCTC---CGCT--CG-------AAAGA--------------------AAACTTAACTATGAGTAAAAATAA------------CA---CC--------------TA-------GTAACCGGTTA-------CTCCC----A--CCC--CTCGCAGGTTTTCCGTATACGCACTCCTACAGAAGCTATCAACTTGGTGTCCCTGCTSizeHit CountTotal NormTotal
No Reads
droBia1
TTTGAAGTACATTAATCTTTCCATTTAAAACTGAAAAAAATTT---------GTGAAAATTCA--CGTCTGTAAATATAAAAG--CT----TCCCCT--GTGCTA------TCAAGTGTG------T-C----------TGTCC-AATTCA------ATGATGATTACTGCGT---TACTGCCA------CGC-CCTGTT-----------------------GCCCCGTTGCCTAGATGC-----------------------------------CTTTTTGAGACCCGCCCAGT-TGATGTGTCCCGCAAGAAGCTC---CGAC--T--------CAAAATGTTTGGT---G----AAA------------------------G------------CACAACT--------------CA-------CTAACTGGATT-------TTCCTTCCTACTCC--TATCGTAGGTTTTCCGTATACGCACTCCTACAGAAGCTATAAACTTGGTGTCCCTCCTSizeHit CountTotal NormTotal
No Reads
droTak1
GCTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTGCC-----C-CGA-TATGT------------------------------------------------------------------------------------TGCCCCGCCCTGTTTGTTGTGTCCCGCAAGAAGCTC---CGCT--C--------GAAAATGCCTGGC---GA----AG-------------ACATCA-AAACA------------CA---CC--------------CA-------CTAACCCACTA-------CTCCTTCC-T--CC--CTCTGCAGGTTTTCCGTATACGCACTCCTACAGAAGCTATCAACTTGGTGTCCCTGCTSizeHit CountTotal NormTotal
No Reads
droEle1
TAAAT---AT---AATTAT----GCGAAAACCGAAACAGGTCC---------TT-------GA--GTTCTGTAAATACGAACG--CT----TCCTCTGCGTGTTC------ACACTTGTG------TGC----------TGTCCCATTTCG------ATGATGA---TTGCGTTTTTACAGCC-----C-CGCCCCAGTT-------------------------------G----------------TC---CAGTTGC----------------TCCAATGTGTCCCGCCCAAT-TGTTGAGTCCCGCAT----------------C--------CAAGATGTCTGGT---T----AAGATTAA-------------------A------------TA---CA--------------TA-------CTAATTGAATA-------CCTAT----A--CTG--CCCGCAGGTTTTTCGTATACGCACTCCTACAGAAGCTATCAACTTGGTGTCCCTGCTSizeHit CountTotal NormTotal
No Reads
droRho1
TCTCCAACACATAAATTAT----GTGAAAACCGAAACAGATCC---------AT-------TG--AAACAGTAA--CCCAACG--CT----TTCTCT--GTGTCC------TCACTTGTG------TAC----------CGTCC-ATTACC--G---ATGATGA---TTAC-T---TACTGCC-----C-CGCCCCAGTT-------------------------------G----------------TC---CAGTTGC----------------TCGATTGAGTCCCGCCCAGT-TGTTGAGTGCCGCAAG----------------------------ATGTGTGC------TT-AAAACTAC-------------------C-----------------TC--------------CA-------CTAACTGGATA-------CTCCT----C--CCA--CCCGCAGGTTTTCCGTATACGCACTCCTACAGAAGCTATCAACTTGGTGTCCCTGCTSizeHit CountTotal NormTotal
No Reads
droFic1
TGTGAAA----------------------CCCGCAACTG--GAGGAAGGTCCCA-TGA----A--CTTGTGTAAATACGAACG--CT----TCCTCT--GTGCTC------TCACCTGTGTTCTGTGCCCTGTGTCCTCTGTCC-AA--------------TCA---ACTTGC---AACTGCATC-------GA---GTT-----------------------GCCCCATCCT--TCACCTC------AC---CTTCTGGCCAG-----------------CGAGTCCCGTCCCGT-TTTTTTGTTTTGAGAGAAGCTC---CCTGT-CG-------CAGGA--------------------TCAC-------------------G------------TG---CC--------------CA-------CTGACCGAGTT-------GTCTCGCC-C--TC--CTCCGCAGGTTTTCCGTATTCGCACTCCTACAGAAGCTATCAACTTGGTGTCCCTGCTSizeHit CountTotal NormTotal
No Reads
droKik1
GCGAGGA-----------------------------TCCTTGA---------GG-------CGTTTGTCTGTCTCTCTT-TCGC-TT----TCCTCT--GTGCCC------TATTTTTTG------TCC----------TGTCC-AAATTGCCAATGATGATGA---TTGCGT---TACTGTACTGCCCCCGC-CCTGTT-------------------------------GT--CCCGCTG------AC---CTGTTGTTGTC------------CATGTTCTGTCCCGCCCTGT-TTTT--GTCCTGCAACAAGATGCTCCTCC--C--------ACGGA--------------------CGATTTGCCCAGGAATGC-GCACACACACACACACACACTG-----------------ATTGATCTCTTGCTCC----------GTTCT----T--CC--TCCCACAGGTTTTCCGTATACGCACTCCTACAGAAGCTATCAACTTGGTGTCCCTGCTSizeHit CountTotal NormTotal
No Reads
droAna3
CTCAAGC-----------------------------CATATAA---------GA-------AATGTCCTTGTAAATATGAAAG--CT----TCCTCT--GTGTTC-TGTTGTCACTTGTG------TCC----------TGTCC-TT----------------------------------------------------T-------------------------------G----------------TC---CCGTTGC----TCCTTCTCCCCCTAAATCCC-------------------CCCCCGGAAGAGACTG---CTTA--C-TAATCTA----------------------------------------------------------------------------------------------TTTGGAT-----------------GTCCT--TTGAACAGGTTTTCCGTATACGCACTCCGACAGAAGCTATCAACTTGGTGTCCCTGCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGCACTCCGACAGAAGCTATC.................2412.002020000
...........................................................................................................................................................................................................................................................................................................................................AATCTA----------------------------------------------------------------------------------------------TTTGGAT-----------------GTCCT--TTGAACAG..................................................2612.002000002
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCGTATACGCACTCCGACAGAAGC.....................2711.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACTTGGTGTCCCTGC.1911.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCCGACAGAAGCTATCAACTTG...........2611.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGCACTCCGACAGAAGCT....................2111.001100000
droBip1
TTCAG-C-----------------------------CATTTAG---------GA-------AATATTCTTGTAGATATGAATC--CTTGTTCTCTTT--GTTTTC------TCACTTGTAAGCTAGTCC----------TGTTT-GTCTCT-----------------------------GTC-----C-CGTCCCG----------------------------------------------------C---CAGTTGC----TCCTTCTC----CTACTCCT-------------------CCTCTGCTAGACCAT----TTTA--C-TAATCCT----------------------------------------------------------------------------------------------TTT-GAT-----------------G---T--CCTTGTAGGTTTTCCGTATACGCACTCCGACAGAAGCTATCAACTTGGTGTCCCTGCTSizeHit CountTotal NormTotal
No Reads
dp5
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCCGATC----ATTCTCCT----G--CGACTCCCACAGGTTTTCCGTATACGCACTCCGACAGAAGCTATCAACTTGGTGTCCCTGCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGCACTCCGACAGAAGCT....................2111.0010010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCTATCAACTTGGTGTCC.....2211.0010010000000
droPer2
T--------------------------------------------------------------------------------------------------------------------GTG------TCC----------TGTCC-T--CCA------GCGATGA---TTGTGC---TACTACCCA-------GTCCTGC--------------------------CCCAGCTCCGCCATGTC------TT---GTTCTGTCCTGC-----------CGATTCGAGTTCTGTTTCTGTTGTTTTTCCTCGTGAGA--TTT---GCCG--C-CAATCCA------GTCAAGT---GTCCCCAA------------------------A------------CGCCACCCAGCAGTCGGCAATCA-------CTAATGCGATC----ATTCTCCT----G--CGACTCCCACAGGTTTTCCGTATACGCACTCCGACAGAAGCTATCAACTTGGTGTCCCTGCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................CACCCAGCAGTCGGCAAT.....................................................................................................1812.002200000
droWil2
TCCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCATAGGTTTTCCGCATACGCACTCCGACAGAAGCTATTAATTTGGTATCTCAACTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGACAGAAGCTATTAA...............1911.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGCACTCCGACAGAAGCT....................2111.00100100
droVir3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAGGTTTTCCGTATACGCACTCCGACAGAAGCTATCAACTTGGTGTCGCAGCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTATCAACTTGGTGTCGC....2214.004000200000100000000000000000000000000000000000000000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATACGCACTCCGACAGAAGCTATC.................2712.002001000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCGACAGAAGCTATCAACTTGGT.........2611.001000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTATCAACTTGGTGTCGCAGCT2611.001000000000000000000000000000000000000001000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATACGCACTCCGACAG.........................1911.001000000000000000000000000000000000000000000000000000000000000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACGCACTCCGACAGAA.......................2011.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTATCAACTTGGTGTCGCAGCT2411.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGCACTCCGACAGAAG......................1911.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCCGTATACGCACTCCGACAGAAG......................2811.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGCACTCCGACAGAAGCTA...................2211.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCTATCAACTTGGTGTCGCAGCT2711.001000000000000000000100000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGCACTCCGACAGAA.......................1811.001000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGACAGAAGCTATCAACTTGGT.........2511.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACGCACTCCGACAGAAGCT....................2211.001000000000000000000000000000000001000000000000000000000000000000
droMoj3
TCTGC-------------------------------CGCCTCG---------GG-------GATAGATATGTATATAT-------------CTCTAT--GTGTATCC----GTATATTTG-------------------TATTT-ATATTT------ATT--TT---TCGCTT---T--------------------GTCGCCCTTCAATGCCGTGTCCTGTTCTGACTCTGCC----------------------------------------------------CCTACCCAAG-TGAAGA---------------C---AGCT--G--------AGTGATGCT---------------------------------------------------------GC----CGCTGCCGATGATTGCATTCTAATTTGATT-------CT-------GGCCA--TTCCACAGGTTTTCCGTATACGCACTCCGACAGAAGCTATCAACTTGGTGTCGCAGCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTATACGCACTCCGACAGAAGC.....................2512.002200000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTATCAACTTGGTGTCGC....2111.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATCAACTTGGTGTCGCAGC.2211.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCACTCCGACAGAAGCTATCAACTT............2711.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGATT-------CT-------GGCCA--TTCCACAG..................................................2311.001000010
droGri2
C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCACAGGTTTTCCGTATACGCACTCCGACAGAAGCTATCAACTTGGTGTCGCAGCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCCGACAGAAGCTATCA................2111.00110
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCTATCAACTTGGTG........1911.00110
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACGCACTCCGACAGAAGCT....................2311.00110

Generated: 05/19/2015 at 04:17 PM