ID:

dsi_20774

 Coordinate:

3r:4372510-4372659 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-21.8 -21.6 -21.5

Flybase annnotation

exon [3r_4372286_4372509_-]; CDS [3r_4372286_4372509_-]; intron [3r_4372510_4372913_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAAATTTTACAAATTTACACACGTTTTTCTAGGAGCTTATATGGTGTAAGATAGCTTTTGGTCAATAGGCCATGACACGTATCAACATTATTATTATTGCTAGTGTTCGGAACAGATAAAAATAATTACTAGATAAGTCAATTGGACATGCAACCTACAATTGCCGAGTGATGATAATAAATTGTAATTTTTGTTTTCAGTAAACTTACATCGTCATCTACAGGCACATGGTGTCGACTACTTGCAATTC
**************************************************........(((((....)))))(((.(((.....((((((((((((((((......((((.................(((.....)))((((((.............)))))))))))))))))))))))..)))......)))..))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553486
Makindu_3 day-old ovaries
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
.............................................................................................................................................................................................................................AGGCACATGGTGTCGACT........... 18 0 1 1.00 1 1 0 0 0 0
................ACACACGTTTTTCTAGGAGCT..................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................................TTACATCGTCATCTACAGGCA........................ 21 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................TTGGACATGCAACCTACAAT......................................................................................... 20 0 1 1.00 1 0 0 1 0 0
...........................................................................................................................................................................................................................ACAGGCACATGGTGTCGACT........... 20 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................................TTACATCGTCATCTACAGGCACATGGT.................. 27 0 1 1.00 1 0 1 0 0 0
....................................................AGCTTTTGGTTAATAGGGAA.................................................................................................................................................................................. 20 3 12 0.08 1 0 1 0 0 0
........................................................................................................................AATGATTACTAGATA................................................................................................................... 15 1 18 0.06 1 0 0 0 1 0
........................................................................................................................................................................................................................TTTACCGGCACCTGGTGT................ 18 3 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

ATTTAAAATGTTTAAATGTGTGCAAAAAGATCCTCGAATATACCACATTCTATCGAAAACCAGTTATCCGGTACTGTGCATAGTTGTAATAATAATAACGATCACAAGCCTTGTCTATTTTTATTAATGATCTATTCAGTTAACCTGTACGTTGGATGTTAACGGCTCACTACTATTATTTAACATTAAAAACAAAAGTCATTTGAATGTAGCAGTAGATGTCCGTGTACCACAGCTGATGAACGTTAAG
**************************************************........(((((....)))))(((.(((.....((((((((((((((((......((((.................(((.....)))((((((.............)))))))))))))))))))))))..)))......)))..))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 O001
Testis
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
................................................................................................................................................................................................................TTAGCAGTAGATGTCCGTGTAC.................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GCAGTAGATGTCCGTGTACCA.................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.........................................................................CTGTGGGTAGTTGTCATAATA............................................................................................................................................................ 21 3 2 1.50 3 0 0 0 3 0 0 0 0 0 0
.....................................................................................................TCACAAGCCTGGACCATTT.................................................................................................................................. 19 3 20 1.20 24 0 0 0 0 0 0 24 0 0 0
....................................................................................................................................................................................................................CAGTAGATGTCCGTGTACCACA................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TAGCAGTAGATGTCCGTGTAC.................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................CGGCTCACTACTATTATTTAA................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................GTGGCAGTAGATGTCCGTGTA..................... 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................................TTATACCACAGCTGATGAACGTTA.. 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................CTGTGCATAGTTGTAATAATAA........................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................GCAGTAGACGTCCGTGTACCA.................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TGTGGCAGTAGATGTCCGTGT...................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................GTAGCAGTAGATGTCCGTGTA..................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GCAGTAGATGTCCGT........................ 15 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................TTGGCAGTAGATGTCCGTGTA..................... 21 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0
..........................................................................TGTGGGTAGTTGTCATAATA............................................................................................................................................................ 20 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0
.........................................................................CTGTGGGTAGTTGTCATAA.............................................................................................................................................................. 19 3 18 0.17 3 0 0 0 3 0 0 0 0 0 0
..........................................................................TGTGGCTAGTTGTCATAATA............................................................................................................................................................ 20 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0
.........................................................................CTGAGCATAGTTGGAAAA............................................................................................................................................................... 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................TCACTTGTCCGTTGGATG............................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Generated: 04/24/2015 at 04:28 AM