ID:

dsi_20761

 Coordinate:

4:29128-29277 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.5 -14.4 -13.9 -13.7

Flybase annnotation

exon [4_28754_29127_-]; CDS [4_28754_29127_-]; intron [4_29128_31512_-]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTCTTTCTCCCTAAGTAATAATTATGACCACAAAAATGTATACCTAAATACGATATTTTTAGGTGATTAGAGACGATTTATTTCATTTGATATTTGATAATATTTAAGTGTCTTTATATAAGTTAAAGACTCAGATGTTGAAATAATACTTATAGATGATAAAAATAATTTAACAAATAATGTATTTTATTTTCTATAGGTATTCTGAATTGCAGTTTTTAGCGTCCAGGAGAGCAGCTGCCGTCGCTG
******************************************************..((((.............................(((((((((............(((((((.......))))))))))))))))))))********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
......................................................TATTTTTAGGTGATTAGAGACGATT........................................................................................................................................................................... 25 0 1 16.00 16 13 1 1 0 1 0 0 0
.......................................................................................................................TAAGTTAAAGACTCAGATGTTGAAA.......................................................................................................... 25 0 1 6.00 6 1 4 1 0 0 0 0 0
.....................................................................................................................TATAAGTTAAAGACTCAGATGTTGAAA.......................................................................................................... 27 0 1 5.00 5 0 4 1 0 0 0 0 0
.................................................................................................................TTTATATAAGTTAAAGACTCAGATGT............................................................................................................... 26 0 1 3.00 3 1 2 0 0 0 0 0 0
.................................................TACGATATTTTTAGGTGATTAGAGACGA............................................................................................................................................................................. 28 0 1 3.00 3 1 0 2 0 0 0 0 0
........................................................................................................................................................ATAGATGATAAAAATAATTTAACAA......................................................................... 25 0 1 3.00 3 3 0 0 0 0 0 0 0
...................................................................................................................................TCAGATGTTGAAATAATACTTATAGA............................................................................................. 26 0 1 3.00 3 0 3 0 0 0 0 0 0
.................................................TACGATATTTTTAGGTGATTAGAGAC............................................................................................................................................................................... 26 0 1 3.00 3 0 3 0 0 0 0 0 0
...........................................................................................................................................................................................................TTCTGAATTGCAGTTTTTAGCGTC....................... 24 0 1 3.00 3 3 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTCTGAATTGCAGTTTTTAGCGTCCA..................... 26 0 1 3.00 3 3 0 0 0 0 0 0 0
.................................................TACGATATTTTTAGGTGATTAGAGA................................................................................................................................................................................ 25 0 1 2.00 2 0 2 0 0 0 0 0 0
............................................................TAGGTGATTAGAGACGATTTATT....................................................................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTCTGAATTGCAGTTTTTAGCGT........................ 23 0 1 2.00 2 2 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TATTCTGAATTGCAGTTTTTAGCGTC....................... 26 0 1 2.00 2 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................ATTGCAGTTTTTAGCGTCCAGGAGA................ 25 0 1 2.00 2 0 2 0 0 0 0 0 0
..................................................................................................................................................................................TAATGTATTTTATTTTCTATAGGTA............................................... 25 0 1 2.00 2 0 2 0 0 0 0 0 0
..............................................................................................................................................................................................................TGAATTGCAGTTTTTAGCGTCCAGGAGA................ 28 0 1 2.00 2 0 2 0 0 0 0 0 0
.........................TGACCACAAAAATGTATACCTAAATA....................................................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0
.................................................TACGATATTTTTAGGTGATTAGAGACGATT........................................................................................................................................................................... 30 0 1 2.00 2 0 2 0 0 0 0 0 0
..........................................................TTTAGGTGATTAGAGACGATTTATT....................................................................................................................................................................... 25 0 1 2.00 2 0 0 0 0 2 0 0 0
.......................................................................AGACGATTTATTTCATTTGATATT........................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................................................AGATGTTGAAATAATACTTATAGATGA.......................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................TTTAGCGTCCAGGAGAGCAGCTGC........ 24 0 1 1.00 1 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................TTTTTAGCGTCCAGGAGAGCAGCTGCC....... 27 0 1 1.00 1 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................TAGCGTCCAGGAGAGCAGCTGCCGT..... 25 0 1 1.00 1 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................ATTGCAGTTTTTAGCGTCCAGGAT................. 24 1 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................TAGGTATTCTGAATTGCAGTTTTTAGCGT........................ 29 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................TATTTTTAGGTGATTAGAGACGATTT.......................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................GTATTCTGAATTGCAGTTTTTAGCGTC....................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................ATTTTAGCGTCCAGGAGAGCAGC........... 23 1 1 1.00 1 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................TGAATTGCAGTTTTTAGCGTCCAGGA.................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................TTTCTATAGGTATTCTGAATTGCAGTT................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................ATATAAGTTAAAGACTCAGATGTTG............................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTTTCTATAGGTATTCTGAATTGCAG.................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................................TTAAAGACTCAGATGTTGAAA.......................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................GGTATTCTGAATTGCAGTTTT.............................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TAGCGTCCAGGAGAGCAGCTGCCGTCA... 27 1 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................GTATTCTGAATTGCAGTTTTTAGCGA........................ 26 1 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................................................AGATGTTGAAATAATACTTATAGA............................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................AGTTAAAGACTCAGATGTTGAAATAA....................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0
..........................................................TTTAGGTGATTAGAGACGATTTAT........................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................TAATACTTATAGATGATA........................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................TATAGGTATTCTGAATTGCAGTTTT.............................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................TATTTTTAGGTGATTAGAGACGAT............................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................TATAGGTATTCTGAATTGCAGTT................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................TCCAGTTTTTAGCGTCCAGGAGAGC.............. 25 1 1 1.00 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................TCTGAATTGCAGTTTTTAGCGTCC...................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................TATATAAGTTAAAGACTCAGATGT............................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TTTTAGCGTCCAGGAGAGCAGCT.......... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TAGCGTCCAGGAGAGCAGCTGCCGTA.... 26 1 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................TATATAAGTTAAAGACTCAGATGTTGAAA.......................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................TCTATAGGTATTCTGAATTGCAGTTT............................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................TAAGTTAAAGACTCAGATGTTGAAATA........................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0
........................................................................................................................................................ATAGATGATAAAAATAATTTAACA.......................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TAGCGTCCAGGAGAGCAGCTGCA....... 23 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TTGCAGTTTTTAGCGTCCAGGAGAGCAGC........... 29 0 1 1.00 1 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................GGTATTCTGAATTGCAGTTTTTAGCGT........................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................TATAGGTATTCTGAATTGCAGTTT............................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................CAGGAGAGCAGCTGCCGTCGT.. 21 1 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................ATTGCAGTTTTTAGCGTCCAGGA.................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................TCTATAGGTATTCTGAATTGCAGTTTTT............................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................TCATTTGATATTTGATAATATTTA............................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................TATAGGTATTCTGAATTGCAGTTTTT............................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................TAGGTATTCTGAATTGCAGTTTTTAG........................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................GTATTCTGAATTGCAGTTTTTAGC.......................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................TTCTGAATTGCAGTTTTTAGCGTAA...................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TAGCGTCCAGGAGAGCAGCTGCCGTC.... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................TATATAAGTTAAAGACTCAGATG................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................GATAGGTAATGTGAATTGCA................................... 20 3 10 0.10 1 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................ATATTCTGAATTGCA................................... 15 1 20 0.10 2 0 0 2 0 0 0 0 0
......................................................................................................................................................................................................................AGTTTGTAGAGTCCAGG................... 17 2 11 0.09 1 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................TAGGTAATGTGAATTGCA................................... 18 2 13 0.08 1 0 0 1 0 0 0 0 0
.......................................................................................................TTTGAATGTCTTTATATAA................................................................................................................................ 19 2 17 0.06 1 0 0 0 0 0 0 0 1
.................................................................................................................................CCTCAGATGTGGAAATA........................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................................................AGCAGCTGCCGTCCC.. 15 1 20 0.05 1 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................GCATTCTGAATTGCA................................... 15 1 20 0.05 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

AAAGAAAGAGGGATTCATTATTAATACTGGTGTTTTTACATATGGATTTATGCTATAAAAATCCACTAATCTCTGCTAAATAAAGTAAACTATAAACTATTATAAATTCACAGAAATATATTCAATTTCTGAGTCTACAACTTTATTATGAATATCTACTATTTTTATTAAATTGTTTATTACATAAAATAAAAGATATCCATAAGACTTAACGTCAAAAATCGCAGGTCCTCTCGTCGACGGCAGCGAC
**********************************************************************************************************..((((.............................(((((((((............(((((((.......))))))))))))))))))))****************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
...................................................................AATCTCTGCTAAATAAAGTAAACTAT............................................................................................................................................................. 26 0 1 144.00 144 6 127 6 5 0 0
......AGAGGGATTCATTATTAATACTGGTGTT........................................................................................................................................................................................................................ 28 0 1 110.00 110 110 0 0 0 0 0
........AGGGATTCATTATTAATACTGGTGTT........................................................................................................................................................................................................................ 26 0 1 78.00 78 76 0 2 0 0 0
......AGAGGGATTCATTATTAATACTGGTGT......................................................................................................................................................................................................................... 27 0 1 66.00 66 62 0 4 0 0 0
..................................................................................................................................................................................................................AACGTCAAAAATCGCAGGTCCTCTCGT............. 27 0 1 60.00 60 1 57 0 2 0 0
.......................................................................................................................ATTCAATTTCTGAGTCTACAACTT........................................................................................................... 24 0 1 49.00 49 34 0 15 0 0 0
......AGAGGGATTCATTATTAATACTGGTGTTT....................................................................................................................................................................................................................... 29 0 1 40.00 40 38 0 2 0 0 0
........AGGGATTCATTATTAATACTGGTGTTT....................................................................................................................................................................................................................... 27 0 1 36.00 36 34 0 2 0 0 0
..................................................................TAATCTCTGCTAAATAAAGTAAACTAT............................................................................................................................................................. 27 0 1 36.00 36 5 28 2 1 0 0
....................................................................ATCTCTGCTAAATAAAGTAAACTAT............................................................................................................................................................. 25 0 1 27.00 27 0 26 1 0 0 0
.....................................................................TCTCTGCTAAATAAAGTAAACTAT............................................................................................................................................................. 24 0 1 25.00 25 1 23 0 1 0 0
.................................................................CTAATCTCTGCTAAATAAAGTAAACTAT............................................................................................................................................................. 28 0 1 24.00 24 1 21 2 0 0 0
........AGGGATTCATTATTAATACTGGTGT......................................................................................................................................................................................................................... 25 0 1 22.00 22 22 0 0 0 0 0
...........................................................................................................................................................................................................AAGACTTAACGTCAAAAATCGCAGGT..................... 26 0 1 21.00 21 1 20 0 0 0 0
........AGGGATTCATTATTAATACTGGTGTTTT...................................................................................................................................................................................................................... 28 0 1 20.00 20 17 0 3 0 0 0
......AGAGGGATTCATTATTAATACTGGTG.......................................................................................................................................................................................................................... 26 0 1 20.00 20 20 0 0 0 0 0
......AGAGGGATTCATTATTAATACTGGT........................................................................................................................................................................................................................... 25 0 1 18.00 18 18 0 0 0 0 0
.................................................................................................................................................................................................................TAACGTCAAAAATCGCAGGTCCTCTCGT............. 28 0 1 14.00 14 0 14 0 0 0 0
.........GGGATTCATTATTAATACTGGTGTT........................................................................................................................................................................................................................ 25 0 1 12.00 12 12 0 0 0 0 0
.........................................................................................................................................................................................AAAATAAAAGATATCCATAAGACTT........................................ 25 0 1 12.00 12 11 1 0 0 0 0
........AGGGATTCATTATTAATACTGGTG.......................................................................................................................................................................................................................... 24 0 1 11.00 11 11 0 0 0 0 0
........................................................................CTGCTAAATAAAGTAAACTATAAACTAT...................................................................................................................................................... 28 0 1 11.00 11 0 11 0 0 0 0
.....AAGAGGGATTCATTATTAATACTGGTGTT........................................................................................................................................................................................................................ 29 0 1 10.00 10 10 0 0 0 0 0
......................................................................CTCTGCTAAATAAAGTAAACTAT............................................................................................................................................................. 23 0 1 10.00 10 0 10 0 0 0 0
..AGAAAGAGGGATTCATTATTAATACTGGT........................................................................................................................................................................................................................... 29 0 1 9.00 9 8 0 1 0 0 0
...................................................................................................................................................................................................................ACGTCAAAAATCGCAGGTCCTCTCGT............. 26 0 1 9.00 9 0 8 0 1 0 0
.........................................................................................................................TCAATTTCTGAGTCTACAACTTTAT........................................................................................................ 25 0 1 8.00 8 6 0 2 0 0 0
.....AAGAGGGATTCATTATTAATACTGGTGTTT....................................................................................................................................................................................................................... 30 0 1 7.00 7 7 0 0 0 0 0
....AAAGAGGGATTCATTATTAATACTGGTGT......................................................................................................................................................................................................................... 29 0 1 6.00 6 3 0 3 0 0 0
......AGAGGGATTCATTATTAATACTGGTGTTTT...................................................................................................................................................................................................................... 30 0 1 6.00 6 6 0 0 0 0 0
.........GGGATTCATTATTAATACTGGTGTTT....................................................................................................................................................................................................................... 26 0 1 5.00 5 5 0 0 0 0 0
....AAAGAGGGATTCATTATTAATACTGGTGTT........................................................................................................................................................................................................................ 30 0 1 5.00 5 5 0 0 0 0 0
...................................................................TATCTCTGCTAAATAAAGTAAACTAT............................................................................................................................................................. 26 1 1 5.00 5 0 5 0 0 0 0
.....................................................................................................................ATATTCAATTTCTGAGTCTACAACTT........................................................................................................... 26 0 1 4.00 4 4 0 0 0 0 0
.......GAGGGATTCATTATTAATACTGGTGTT........................................................................................................................................................................................................................ 27 0 1 4.00 4 4 0 0 0 0 0
.........................................................................................................................................................................................AAAATAAAAGATATCCATAAGACTTAAC..................................... 28 0 1 4.00 4 0 4 0 0 0 0
...............................................TTATGCTATAAAAATCCACTAATCT.................................................................................................................................................................................. 25 0 1 4.00 4 3 1 0 0 0 0
...........................................................................................ATAAACTATTATAAATTCACAGAAAT..................................................................................................................................... 26 0 1 4.00 4 4 0 0 0 0 0
........................................................................CTGCTAAATAAAGTAAACTATAAACT........................................................................................................................................................ 26 0 1 4.00 4 0 3 0 1 0 0
.................................................................................................................................................................................................................AAACGTCAAAAATCGCAGGTCCTCTCGT............. 28 1 1 4.00 4 0 3 0 1 0 0
..............................................................................................................................................................................................................................CGCAGGTCCTCTCGTCGACGGCAGCGA. 27 0 1 4.00 4 0 4 0 0 0 0
........AGGGATTCATTATTAATACTGGTGTTTTT..................................................................................................................................................................................................................... 29 0 1 3.00 3 2 0 1 0 0 0
..............................................................................................................................................................................................AAAAGATATCCATAAGACTTAACGT................................... 25 0 1 3.00 3 2 1 0 0 0 0
.......................................................................................................................................................................................ATAAAATAAAAGATATCCATAAGACT......................................... 26 0 1 3.00 3 2 0 1 0 0 0
......................................................................CTCTGCTAAATAAAGTAAACTATAAA.......................................................................................................................................................... 26 0 1 3.00 3 0 1 0 2 0 0
..............................................................CCACTAATCTCTGCTAAATAAAGTAAACT............................................................................................................................................................... 29 0 1 3.00 3 2 0 1 0 0 0
.................................................................................................................................................................................................................TAACGTCAAAAATCGCAGGTCCTCT................ 25 0 1 3.00 3 0 3 0 0 0 0
.........................................................................................................................................................................................AAAATAAAAGATATCCATAAGACT......................................... 24 0 1 3.00 3 3 0 0 0 0 0
.........GGGATTCATTATTAATACTGGTGT......................................................................................................................................................................................................................... 24 0 1 3.00 3 3 0 0 0 0 0
.......................................................................................................................ATTCAATTTCTGAGTCTACAACTTTAT........................................................................................................ 27 0 1 3.00 3 3 0 0 0 0 0
......................................................ATAAAAATCCACTAATCTCTGCTAAAT......................................................................................................................................................................... 27 0 1 3.00 3 3 0 0 0 0 0
...........................................................................................................................................................................................AATAAAAGATATCCATAAGACTTAAC..................................... 26 0 1 3.00 3 0 3 0 0 0 0
..........................................................................................................................................................................................................AAAGACTTAACGTCAAAAATCGCAGGT..................... 27 1 1 3.00 3 0 3 0 0 0 0
...............................................................................................................................................................................................................CTTAACGTCAAAAATCGCAGGTCCTCT................ 27 0 1 3.00 3 0 3 0 0 0 0
..........GGATTCATTATTAATACTGGTGTTT....................................................................................................................................................................................................................... 25 0 1 3.00 3 3 0 0 0 0 0
........................................................................................................................................................................................TAAAATAAAAGATATCCATAAGACT......................................... 25 0 1 3.00 3 1 2 0 0 0 0
................................................................................................................................................................................................................................CAGGTCCTCTCGTCGACGGCAGCGA. 25 0 1 2.00 2 0 2 0 0 0 0
.......GAGGGATTCATTATTAATACTGGTGTTT....................................................................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0
.....................................................................................................................................................................................ACATAAAATAAAAGATATCCATAAGACT......................................... 28 0 1 2.00 2 1 1 0 0 0 0
.....................................................................TCTCTGCTAAATAAAGTAAACTATAAA.......................................................................................................................................................... 27 0 1 2.00 2 0 2 0 0 0 0
........................................................................CTGCTAAATAAAGTAAACTATAAACTATT..................................................................................................................................................... 29 0 1 2.00 2 0 2 0 0 0 0
...................................................................AATCTCTGCTAAATAAAGTAAACTATA............................................................................................................................................................ 27 0 1 2.00 2 1 1 0 0 0 0
..............................................................................................................................................................................................AAAAGATATCCATAAGACTTAAC..................................... 23 0 1 2.00 2 0 2 0 0 0 0
.........................................................................................................................TCAATTTCTGAGTCTACAACTTTATT....................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0
........................................................................CTGCTAAATAAAGTAAACTATAAAC......................................................................................................................................................... 25 0 1 2.00 2 0 1 0 1 0 0
..................................................................AAATCTCTGCTAAATAAAGTAAACTAT............................................................................................................................................................. 27 1 1 2.00 2 0 2 0 0 0 0
........AGGGATTCATTATTAATACTGGTGTG........................................................................................................................................................................................................................ 26 1 1 2.00 2 2 0 0 0 0 0
......................................................................................................................................................................................................................TCAAAAATCGCAGGTCCTCT................ 20 0 1 2.00 2 1 0 1 0 0 0
.............................................................................................................................................................................................TAAAAGATATCCATAAGACTTAACGT................................... 26 0 1 2.00 2 2 0 0 0 0 0
.....AAGAGGGATTCATTATTAATACTGGTGT......................................................................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0
.................................................................CTAATCTCTGCTAAATAAAGTAAACT............................................................................................................................................................... 26 0 1 2.00 2 0 1 0 1 0 0
..............................................TTTATGCTATAAAAATCCACTAATCT.................................................................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0
................................................................................................................................................................................................AAGATATCCATAAGACTTAACGTCAA................................ 26 0 1 2.00 2 0 2 0 0 0 0
...............................................................................................................................................................................................AAAGATATCCATAAGACTTAACGTCAA................................ 27 0 1 2.00 2 0 2 0 0 0 0
...................................................................................................................................................................................................................ACGTCAAAAATCGCAGGTCCTCTCGTCG........... 28 0 1 2.00 2 0 1 0 1 0 0
.......................................................TAAAAATCCACTAATCTCTGCTAAAT......................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0
............................................................................................................................................................................................ATAAAAGATATCCATAAGACTTAAC..................................... 25 0 1 2.00 2 0 2 0 0 0 0
....AAAGAGGGATTCATTATTAATACTGGT........................................................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0
............................................................................................................................................................................................ATAAAAGATATCCATAAGACTTAACGT................................... 27 0 1 2.00 2 2 0 0 0 0 0
................................................................................................................................................................................................................TTAACGTCAAAAATCGCAGGTCCTCT................ 26 0 1 2.00 2 0 2 0 0 0 0
.................................................................CTAATCTCTGCTAAATAAAGTAAATTAT............................................................................................................................................................. 28 1 1 2.00 2 0 2 0 0 0 0
...............................................................................................................................................................................................................CTTAACGTCAAAAATCGCAGGTCCT.................. 25 0 1 2.00 2 0 2 0 0 0 0
..................................................................................................................................................................................................................AACGTCAAAAATCGCAGGTCCTCT................ 24 0 1 2.00 2 0 2 0 0 0 0
................................................................................................................................................................................................AAGATATCCATAAGACTTAACGA................................... 23 1 1 1.00 1 1 0 0 0 0 0
......AGAGGGATTCATTATTAATACTGGTGC......................................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0
.....TAGAGGGATTCATTATTAATACTGGTGTT........................................................................................................................................................................................................................ 29 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................ACTATTTTTATTAAATTGTTTATTACAT................................................................. 28 0 1 1.00 1 1 0 0 0 0 0
......AGAGGGATTCATTATTAATACTGGTATT........................................................................................................................................................................................................................ 28 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................ATAAAATAAAAGATATCCATAAGACTT........................................ 27 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................AAAATAAAAGATATCCATAAGACTTAACGT................................... 30 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................AATCGCAGGTCCTCTCGTCGACGGCAG.... 27 0 1 1.00 1 0 1 0 0 0 0
..........GGATTCATTATTAATACTGGTGTTTT...................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................................AAAAATCGCAGGTCCTCTCGTCGACGG....... 27 0 1 1.00 1 0 1 0 0 0 0
......AGAGGGATTCATTATTAGTACTGGTG.......................................................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
........................................................................CTGCTAAATAAAGTAAACTATAAACTA....................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
...................ATTAATACTGGTGTTTTTACATAT............................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0
..AGAAAGAGGGATTCATTATTAATACTGTT........................................................................................................................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................TCAATTTCTGAGTCTACAACTTTATTAT..................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0
................................................................................................................................................................................AAATTACATAAAATAAAAGATATCCAT............................................... 27 2 1 1.00 1 0 1 0 0 0 0
.......AAGGGATTCATTATTAATACTGGTGTTT....................................................................................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................TTCTGAGTCTACAACTTTATTATGAATAT............................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................TAACGTCAAAAATCGTAGGTCCTCT................ 25 1 1 1.00 1 0 1 0 0 0 0
......AGAGTGATTCATTATTAATACTGGTGTT........................................................................................................................................................................................................................ 28 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................AGGTCCTCTCGTCGACGGCAGCGA. 24 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................................................................AAAAGATATCCATAAGACTTAACGTCAAA............................... 29 0 1 1.00 1 1 0 0 0 0 0
.....................................................................ACTCTGCTAAATAAAGTAAACT............................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
......TTAGGGATTCATTATTAATACTGGTGTTTT...................................................................................................................................................................................................................... 30 2 1 1.00 1 1 0 0 0 0 0
......................................................................ATCTGCTAAATAAAGTAAACTAT............................................................................................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0
..........GGATTCATTATTAATACTGCTGTTT....................................................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
.........GGGATTCATTATTAATACTGGCGTTT....................................................................................................................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0
.....CAGAGGGATTCATTATTAATACTGGTGT......................................................................................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0
.................................................................CTTATTTCTGCTAAATAAAGTAAACTAT............................................................................................................................................................. 28 2 1 1.00 1 0 1 0 0 0 0
........AGGGATTCATTATTAATACTGATGTTT....................................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0
...............................................................................................................................................................................................................AATAACGTCAAAAATCGCAGGTCCTCT................ 27 2 1 1.00 1 0 1 0 0 0 0
........AGGGATTCGTTATTAATACTGGTGTT........................................................................................................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0
........AGGTATTCATTATTAATACTGGTGTTT....................................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................TACATAAAATAAAAGATATCCATAAGACT......................................... 29 0 1 1.00 1 0 1 0 0 0 0
...................................................................AATCTCTGCTAAATAAAGTAAACTA.............................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0
...................................................................AATCTCTGCTAAATAAAGTAAACTATAAA.......................................................................................................................................................... 29 0 1 1.00 1 0 0 0 1 0 0
.............................................................................................................................................................................................................GACTTAACGTCAAAAATCGCAGGT..................... 24 0 1 1.00 1 0 1 0 0 0 0
........AGGGATTCATTATTAATACTGGTGGGT....................................................................................................................................................................................................................... 27 2 1 1.00 1 1 0 0 0 0 0
...........................CTTTGTTTTTACATATGGATTTATGCTA................................................................................................................................................................................................... 28 3 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................AAATAAAAGATATCCATAAGACTTAAC..................................... 27 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................................................................................................................AATAAAAGATATCCATAAGACTTAACGT................................... 28 0 1 1.00 1 1 0 0 0 0 0
........GGGGATTCATTATTAATACTGGTGT......................................................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
........AGGGATTCATTATTAATACTG............................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................AACAGAAATATATTCAATTTCTGAGT.................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
............................................................ATCCACTAATCTCTGCTAAATAAAGTAAACT............................................................................................................................................................... 31 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................TTAACGTCAAAAATCGCAGGTCCTC................. 25 0 1 1.00 1 0 1 0 0 0 0
........................................................AAAAATCCACTAATCTCTGCTAAATAAAGT.................................................................................................................................................................... 30 0 1 1.00 1 0 0 1 0 0 0
........AGAGATTCATTATTAATACTGGTGTTT....................................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................ATTAACGTCAAAAATCGCAGGTCCTC................. 26 1 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................TTATTCAATTTCTGAGTCTACAACTT........................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................................AATATATTCAATTTCTGAGTCTACAAC............................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0
......GGAGGGATTCATTATTAATACTGGTGTT........................................................................................................................................................................................................................ 28 1 1 1.00 1 1 0 0 0 0 0
......AGAGGGATTCATTATT.................................................................................................................................................................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0
........AGGGATTCATTATTAATACTGGTTTT........................................................................................................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0
......GGAGGGATTCATTATTAATACTGGTGTTT....................................................................................................................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................GGTCCTCTCGTCGACGGCAGCGA. 23 0 1 1.00 1 0 1 0 0 0 0
........AGGGATTCATTATTAATACTGGTGTTA....................................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................TTAACGTCAAAAATCGCAGGT..................... 21 0 1 1.00 1 0 0 0 1 0 0
......AGAGGGATTCATTATTAGTACTGGTGTT........................................................................................................................................................................................................................ 28 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................TACAACTTTATTATGAATATCTACTAT........................................................................................ 27 0 1 1.00 1 0 0 0 1 0 0
........................................................................CTGCTAAATAAAGTAAACTATAAA.......................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0
..AGAAAGAGGGATTCATTATTAATACGGGT........................................................................................................................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0
........AGGGATTTATTATTAATACTGGTGTT........................................................................................................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................AAAAGATATCCATAAGACTTAACGTCAA................................ 28 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................................AACGTCAAAAATCGCAGGTCCTCTGGT............. 27 1 1 1.00 1 0 1 0 0 0 0
.......TAGGGATTCATTATTAATACTGGTGTT........................................................................................................................................................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................................ATAAGACTTAACGTCAAAAATCGCAGGT..................... 28 0 1 1.00 1 0 1 0 0 0 0
......AGAGGGATTCATTATTAATACTTGTGTTT....................................................................................................................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0
........AGGGATTCATTATTAAGACTGGTGTT........................................................................................................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................AAAAAGATATCCATAAGACTTAAC..................................... 24 1 1 1.00 1 0 1 0 0 0 0
.................................................................CTAATCTCTGCTAAATAAAGTAAACTATA............................................................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................................AACGTCAAAAATCGCAGGTCCTCTCGTCG........... 29 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................CACAGAAATATATTCAATTTCTGAGT.................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
......................................................................AACTGCTAAATAAAGTAAACTATAAACT........................................................................................................................................................ 28 2 1 1.00 1 0 1 0 0 0 0
..........GGATTCATTATTAATACTGGTGTT........................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
.....CAGAGGGATTCATTATTAATACTGGTGTT........................................................................................................................................................................................................................ 29 1 1 1.00 1 1 0 0 0 0 0
..............................................................CCACTAATCTCTGCTAAATAAAGTAAAC................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................................................TTAACGTCAAAAATCGCAGGTCCT.................. 24 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................................................................AAAAATAAAAGATATCCATAAGACTT........................................ 26 1 1 1.00 1 1 0 0 0 0 0
.....................................ACATATGGATTTATGCTATAAAAAT............................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
.....................................................................TCTCTGCTAAGTAAAGTAAACTAT............................................................................................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0
.............................................................................................AAACTATTATAAATTCACAGAAATAT................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................TTTCAATTTCTGAGTCTACAACTT........................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..................................................................TAATCTCTGCTAAATAAAGTAAACT............................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0
..............................................................................................................................TTCTGAGTCTACAACTTTATTATGAAT................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
....................................................................CTCTCTGCTAAATAAAGTAAACTAT............................................................................................................................................................. 25 1 1 1.00 1 0 1 0 0 0 0
.............................................................................AAATAAAGTAAACTATAAACTATTAT................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................................................................................AACGCAGGTCCTCTCGTCGACGGCAGCGA. 29 1 1 1.00 1 0 1 0 0 0 0
...........................................GGATTTATGCTATAAAAATCCACTAAT.................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................TCAATTTCTGAGTCTACAACTT........................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
.........................................................AAAATCCACTAATCTCTGCTAAAT......................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
..AGAAAGAGGGATTCATTATTAATACTGGTGT......................................................................................................................................................................................................................... 31 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................ATATCCATAAGACTTAACGTCAAAAAT............................ 27 0 1 1.00 1 0 1 0 0 0 0
.............................................................TCCACTAATCTCTGCTAAATAAAGTAAACT............................................................................................................................................................... 30 0 1 1.00 1 1 0 0 0 0 0
...........................................GGATTTATGCTATAAAAATCCACT....................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................CGCCGGTCCTCTCGTCGACGGCAGCGA. 27 1 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................................................................................TTAACGTCAAAAATCGCAGGTCCTCTC............... 27 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................ATTCAATTTCTGAGTCTACAAC............................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
..AGAAAGAGGGATTCATTATTAATACTGG............................................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0
..............................................................................................................................................................................................................ACTTAACGTCAAAAATCGCAGGTCCTCT................ 28 0 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................................................................................ATAACGTCAAAAATCGCAGGTCCTCTCGT............. 29 1 1 1.00 1 0 1 0 0 0 0
..........GGATTCATTATTAATACTGGTGTTA....................................................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
...................................................................AATCTCTGCTAAATAAAGTACTAT............................................................................................................................................................... 24 3 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................................................TTATTACATAAAATAAAAGATATCCAT............................................... 27 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................................TATCTACTATCTTTTTTAAACT............................................................................ 22 3 2 0.50 1 0 0 0 0 1 0
......................................................................................................................................................................................................TCCATAAGACTTGAC..................................... 15 1 7 0.14 1 0 0 0 0 0 1
.................................................................................................................................................................................................................................AGGCCCTCTCGTCGA.......... 15 1 10 0.10 1 0 0 0 0 0 1
..................................................................TAATCTCTGCTGAATA........................................................................................................................................................................ 16 1 14 0.07 1 0 0 0 0 0 1
.................................................................................................................................................................................TATTAAATAAAATAACAGGTAT................................................... 22 3 15 0.07 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:29078-29327 - dsi_20761 TTTCTTTCTCCC---TAAGTAATAATT------------ATGACC-------ACAAAA-------------------------------------ATGTATACCTAAATACG-----ATATTTTTAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--TAGAG-------------------------ACGATTTATT---TCATTTG-ATATTTGATAATATTTAAGTGTCTTTATATAAGTTAAAGACTCAGATGTTGAAAT-------------------AAT---------ACTTATAGATGA----------------------------------------TAAAAATAA-----------------------------------------------------------------------------TTTAACAAATAATGTATTTTATTTTCTATAGGTATTCTGAATTGCAGTTTTTAGCGTCCAGGAGAGCAGCTGCCGTCGCTG
droSec2 scaffold_52:19154-19403 - TTTCTTTCTCCC---TAAGTAATAATT------------ATGACC-------ACAAAA-------------------------------------ATGTATACCTAAATACG-----ATATTTTTAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--TAGAG-------------------------ACGATTTATT---TCATTTG-ATATTTGATAATATTTAAGTGTCTTTAAATAAGTTAAAGACTCAGATGTTGAAAT-------------------AAT---------ACTTATAGATGA----------------------------------------TAAAAATAA-----------------------------------------------------------------------------TTTAACAAAAAATGTATTTTATTTTCTATAGGTATTCTGAATTGCAGTTTTTAGCGTCCAGGAGAGCAGCTGCCGTCGCTG
dm3 chr4:72961-73155 - TTTCTTTCTCCC---TAAGTAAAAATG------------ATGATT-------ACAAAA-------------------------------------ATGTAAACCCAAATACG-----AGATTTTTGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--GATAG-------------------------ACGATTTATA---GTACT--------------------------------------------------------TA-------------------CGC---------ACTTATAGATGA----------------------------------------TAAACAAAA-----------------------------------------------------------------------------TTTAACAAAAAATTTATTTTATTTCCTATAGGTATTCTGAATTGCAGTTTTTAGCGTCCAGGAGAGCAGCTGCCGTCGCTG
droEre2 scaffold_4512:1247282-1247546 + TCCCTCCGTAAA---CGGGCGGAGATG------------GGTATA-------CG-CGG-------------------------------------GTA------TAAACACG-----ATATTTTTACCTGATTTTCTTTTTCGTAGAGACGTTCATCTGATCACATAATTT-----------------------------TTAAT------------------------TAAAAT--ATGCTGCGACCAAAATGCACTCGTATTGATTAAGCTTAAGTCGTATCTGTTTAAATAATACTAACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAA---AA------------------------------------------------------------------------TT-TA---CCCAAAAAATGTATTTATTTTTCTATAGGTATTCTGAATTGCAGTTTTTAGCATCCAGACGAGCAGCTGCAGTCGCTG
droYak3 v2_chrUn_1355:27778-27976 - GTCTGTAATAAC---TGAACAAAAAAT------------TTTATC-------AACAAA-------------------------------------ATTTAAACG-CAACAAA-----TTTCTTGTATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTC--AAGAT-------------------------ATTATTTACTAACTTTTTTT-ATTTTTAATTATTTTGTAGTATTTTTTTATGAATTAATAATGAAAATGC-----------------------------------------------------------------------------------------ACCTCAAAA------------------------CAATGCCA---------------------------CAGCTTATTACAACCA--GT--------------------TTGTTACTAATGTTAT----ATTTTC--------------------------------T
droEug1 scf7180000406964:19747-19843 - TGTAGATATCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATAATTAT--------AAAAAATAT--------------------------------AAATTATTTTTCTGTAGATATTCTGAATTGCAGTATCTAGCATCCAGAAGAGCTGCAGCCGTTGCTG
droBia1 scf7180000302291:1792240-1792435 + TTTCCTTCACTG---CGTTGCAAACTTCTGACTGAAAACA----------------AA-------------------------------------GTTAATACCATAATA------------------------------------------------------------------------------------------ATAAT------------------------TAAAAC--ATGT----------------TT-CGT----------------------------------------TTGT--TTTAA-------------------------ACCATTTTTA---TTTCT----------AAAAAATTAACATGCCTTTTTGTTTGT----------------------------------------------------AGCTATA-A------------------------------------------------------------------------------------TTATAATCACTAATTAAGTAAATGTTTTGTTTCTGT--------------------------TCTTAATCCATTTGGTGTTCTTAATT-------------------------------------G
droTak1 scf7180000414630:4947-5116 + CTTCCTTCTACC---TGTTACATACTTTTGCACGAA--------------------TC-------------------------------------TAGTATACCCTTTTACT-----CTA----C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAG-----TAAC----------------------------------GGGTATAA---AAATGTG-TTATTTAAAAATGTTTAAATGT-------------TAAGTGTTAAATGTTTTAAA-------------------TGT---------AATTAAATATAA----------------------------------------TATGCAAAA----------GAAAA------------------------------------------------------------------AACCAAGTTACATTTTATTT--------------------------------------------------------T
droEle1 scf7180000490971:444436-444625 + ATTTTTTGATGG---ACTTA----------------------------------------------------------------------------------------------------TC------------------------------------------------T-----------------------------TATTT------------------------AAAA--TTACACCACAAAGAAAATTCAATT-CATTAGTTTTGCACAACTTA--ATCCTTAAATTAAAAATAACT-------------------------------TTGTGAT-----------------------ATTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA-AATTGA--------AAAATGTTT--------------------------------ATTTTCTTTTTCTGTAGATACTCTGAATTGCAGTTCCTAGCATCCAGACGAGCTGCTGCCGTGGCTG
droRho1 scf7180000767752:132717-133002 + TCTCCTTTACTG---CTTTGCAAACTTTTGACTGAAATTATAATACCCTCTTCA-AGGGTATAATGATGACTTCTTTAATTATGACATGGCATCAATATGTTTTCAATAACA-----AAATTATTATA-----------------------------------------------------------------------------TAATTAAACTGAAAAAATATTTAT-----------------------------------------------------------------------------T--ATTCC-------------------------ATCATTTTTA---TGAACAT-AAT-------------------ATTTTTATAAGTATAAGT--------GTAGTGCGTTGATGCGATTTTGAAATAAA---------ATTTCTATTTCA----------------------------------------AATTTACAA-----------------------------------------------------------------------------GATACAAAATATTATCTTTATTTTGTTAAAATCGTTTTCAATAGTTGT--------------------------------T
droFic1 scf7180000453883:22793-22934 - TTTGATATTTGC---AATAACTTAATCTTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAACTAATCTAACTGTTAATA-------------------AAC---------TACAATAAGTG-----------------------------------------------------------------------------------------------------------------------------------AAATATATTGCATTTATTTTTCTGTAGATATTCTGAATTGCAGTTTTTAGCGTCCAGACGAGCTGCTGCTGTGGCTG
droKik1 scf7180000302234:14457-14674 - AAATCATAACTT---GGCCAAAAAGT---------------------------------------------------------------------GCATTAATTTCAATTCGGACAGCTGTTCTGAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAT--TTTTA-------------------------ATGAATTAAT---AAATTTGCATAGGTTATTTAATTGAAGTATTTATCCATAATTTAATAAAAAAATTATT------------------------------------------------------------------------------------------TGGAAAA----------GGTAAAACCTAAAA--ATAGCA---------------------------TAA----------CT-CGTCTAAAAAATTACTTATTTTAATTCGGAAAGCTGTTCTGAGTT--AGTTTTT----------------------------A
droAna3 scaffold_1117:31-176 - TTTATTTTTTTT---TTTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TTTTG-------------------------ATATTTTTTG---TCTTTA----------------------------ATATAATTTGACGTGTGATATTTTGACGT-------------------ACT---------GATTAGATTTAGTAAAAGTAA------------------------------------------------------------------------ATAAAATAAG--------TAAAAGTAA--------------------------------AAATCATTTTTATATAAATGTTGTAAATTATTGTT--------------------------------
droBip1 scf7180000396737:1088108-1088268 + TAAATCTTAATA---CC----------------------------------------------------------------------------------------------------CTCTCTAAGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGC--AAGAGCTTATTTCCATTTACTAACATTTTAACAATT--------------------TGT-------------------TAAATTT------------CT-----------------------------ATTTCTGTA---------------------GCTAAACACTAGAAGAGGA------------AATATGAAA------------------------TAATACTT---------------------------TGAATCTGTACAAATA-GGTTTATCAAAAATGCATTTCA-----------------------------------------------------------T
dp5 Unknown_group_417:17759-17846 + ACAAAAATAGTG---TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATGTTACATGTTACAGATACTCGGAACTACAATTCCTAGCATCTAGGCGAGCAGCAGCTGTAGCAG
droPer2 scaffold_64:97412-97613 + ATTCCTTCTGGA---CGTTACACACATCCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTACCACAAATCTAATATACCC-CAATACTCATTTT----------------------GAG-----TATCGGGTATAATTATCTGTACAAAACAACTGAATGATAATT--------------------TAA-------------------TATAAAT------------TG-----------------------------TTAGAAATA---------------------GTTAAATAGTAGAATAAGAATTTGATCATAATAAAAATTG-----------------------------------------------------------------------------TTTATCAAAAAATTTGTTTTAT------------------ATTTTTAT--------------------------------A
droWil2 scf2_1100000001019:3197-3386 - TACCATTCGGTTCACCATATAGTCTCA------------ATAAAT-------ATATAT-------------------------------------ATATATACTCTACTGCG-----AAACTTTGTTCTAGAATTATTTGGAGTGGGTAATTTCTCATTTCTTTATAATTTTTAATAATAGTAATAAGAAATAATAATCA-----TAAATTGAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAT-------------------AAT---------ATGTATAAATAA----------------------------------------AAAAAGAAA-----------------------------------------------------------------------------ATGAACAAATA---------------------------------------------------------------------A
droVir3 scaffold_12912:83753-83844 - TAGCTCGTTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTCTAACCATTCTCTACT--TTTTATTTCTATTAATGATGCAAATTTTGAATA-------------------GAT---------ATCAATGCAAGA----------------------------------------TAAAAATTG-----------------------------------------------------------------------------TTT-----------------------------------------------------------------------------A
droMoj3 scaffold_6496:17936319-17936525 + AATAATTATGAA---TCATATAAAATT------------AAGGTA-------AAATAA-------------------------------------TAATA---------------------------------------------------------------------------------------------------------TAAATTCAGATAAAATAAATTTAT-----------------------------------------------------------------------------T--TATTG-------------------------AATATAAATA---TGAATAA-TTAATTTATATAAATTCGTTTAAATTA--------------------------------------------------------------------------------G-----TAGTAAAATAAAATATT------------TTATGTTTATGTATTCATTAAAGCTAAAA--ATAA------------------------------AA----------TT-CA---TTTAAATGATTTATTTTATTTTATATAGATATTTT-------------------------------------------
droGri2 scaffold_15126:356475-356556 + TTTCTTTTGTTT---TGTTTAATAATT------------ATAAAA-------ATACAT-------------------------------------ATGTATATTGACATATA-----ATAATTTGTAA--------------------------------------------------------------------------------AA---------------------------------------------------------------------------------------------TGAC--TAGA------------------------TGATGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTTCTTTCTCCC---TAAGTAATAATT------------ATGACC-------ACAAAA-------------------------------------ATGTATACCTAAATACG-----ATATTTTTAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--TAGAG-------------------------ACGATTTATT---TCATTTG-ATATTTGATAATATTTAAGTGTCTTTATATAAGTTAAAGACTCAGATGTTGAAAT-------------------AAT---------ACTTATAGATGA----------------------------------------TAAAAATAA-----------------------------------------------------------------------------TTTAACAAATAATGTATTTTATTTTCTATAGGTATTCTGAATTGCAGTTTTTAGCGTCCAGGAGAGCAGCTGCCGTCGCTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................TATTTTTAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--TAGAG-------------------------ACGATT................................................................................................................................................................................................................................................................................................................................25116.0016000000101000131000
.....................................................................................................................................................................................................................................................................................................................................................................................................TAAGTTAAAGACTCAGATGTTGAAA...........................................................................................................................................................................................................................................................2516.00600000040100010000
...................................................................................................................................................................................................................................................................................................................................................................................................TATAAGTTAAAGACTCAGATGTTGAAA...........................................................................................................................................................................................................................................................2715.00500000040100000000
...............................................................................................................................................................................................................................................................................................................................................................................................TTTATATAAGTTAAAGACTCAGATGT................................................................................................................................................................................................................................................................2613.00300000020000010000
............................................................................................................TACG-----ATATTTTTAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--TAGAG-------------------------ACGA..................................................................................................................................................................................................................................................................................................................................2813.00300000000200010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATGA----------------------------------------TAAAAATAA-----------------------------------------------------------------------------TTTAACAA.........................................................................2513.00300000000000030000
.................................................................................................................................................................................................................................................................................................................................................................................................................TCAGATGTTGAAAT-------------------AAT---------ACTTATAGA..................................................................................................................................................................................................................2613.00300000030000000000
............................................................................................................TACG-----ATATTTTTAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--TAGAG-------------------------AC....................................................................................................................................................................................................................................................................................................................................2613.00300000030000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAATTGCAGTTTTTAGCGTC.......................2413.00300000000000030000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAATTGCAGTTTTTAGCGTCCA.....................2613.00300000000000030000
............................................................................................................TACG-----ATATTTTTAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--TAGAG-------------------------A.....................................................................................................................................................................................................................................................................................................................................2512.00200000020000000000
............................................................................................................................TAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--TAGAG-------------------------ACGATTTATT---.........................................................................................................................................................................................................................................................................................................................2312.00200000000000020000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAATTGCAGTTTTTAGCGT........................2312.00200000000000020000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTGAATTGCAGTTTTTAGCGTC.......................2612.00200000010000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGTTTTTAGCGTCCAGGAGA................2512.00200000020000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGTATTTTATTTTCTATAGGTA...............................................2512.00200000020000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATTGCAGTTTTTAGCGTCCAGGAGA................2812.00200000020000000000
........................................TGACC-------ACAAAA-------------------------------------ATGTATACCTAAATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000000000020000
............................................................................................................TACG-----ATATTTTTAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--TAGAG-------------------------ACGATT................................................................................................................................................................................................................................................................................................................................3012.00200000020000000000
..........................................................................................................................TTTAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--TAGAG-------------------------ACGATTTATT---.........................................................................................................................................................................................................................................................................................................................2512.00200000000000002000
........................................................................................................................................................................................................................................................................................................................AG-------------------------ACGATTTATT---TCATTTG-ATATT............................................................................................................................................................................................................................................................................................................2411.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AGATGTTGAAAT-------------------AAT---------ACTTATAGATGA----------------------------------------.......................................................................................................................................................................2711.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGCGTCCAGGAGAGCAGCTGC........2411.00100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAGCGTCCAGGAGAGCAGCTGCC.......2711.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCGTCCAGGAGAGCAGCTGCCGT.....2511.00100000000000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGTTTTTAGCGTCCAGGAT.................2411.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGTATTCTGAATTGCAGTTTTTAGCGT........................2911.00100000010000000000
......................................................................................................................TATTTTTAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--TAGAG-------------------------ACGATTT...............................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCTGAATTGCAGTTTTTAGCGTC.......................2711.00100000000000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATTGCAGTTTTTAGCGTCCAGGA..................2611.00100000000100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCTATAGGTATTCTGAATTGCAGTT................................2711.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................ATATAAGTTAAAGACTCAGATGTTG..............................................................................................................................................................................................................................................................2511.00100000000000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCTATAGGTATTCTGAATTGCAG..................................2611.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TTAAAGACTCAGATGTTGAAA...........................................................................................................................................................................................................................................................2111.00100000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTCTGAATTGCAGTTTT..............................2111.00100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCGTCCAGGAGAGCAGCTGCCGTCA...2711.00100000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCTGAATTGCAGTTTTTAGCGA........................2611.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AGATGTTGAAAT-------------------AAT---------ACTTATAGA..................................................................................................................................................................................................................2411.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................AGTTAAAGACTCAGATGTTGAAAT-------------------AA.....................................................................................................................................................................................................................................2611.00100000000001000000
..........................................................................................................................TTTAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--TAGAG-------------------------ACGATTTAT.............................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------AAT---------ACTTATAGATGA----------------------------------------TA.....................................................................................................................................................................1811.00100000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGGTATTCTGAATTGCAGTTTT..............................2511.00100000010000000000
......................................................................................................................TATTTTTAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--TAGAG-------------------------ACGAT.................................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGGTATTCTGAATTGCAGTT................................2311.00100000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAATTGCAGTTTTTAGCGTCC......................2411.00100000000000010000
.................................................................................................................................................................................................................................................................................................................................................................................................TATATAAGTTAAAGACTCAGATGT................................................................................................................................................................................................................................................................2411.00100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAGCGTCCAGGAGAGCAGCT..........2311.00100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCGTCCAGGAGAGCAGCTGCCGTA....2611.00100000000000010000
.................................................................................................................................................................................................................................................................................................................................................................................................TATATAAGTTAAAGACTCAGATGTTGAAA...........................................................................................................................................................................................................................................................2911.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATAGGTATTCTGAATTGCAGTTT...............................2611.00100000000000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................TAAGTTAAAGACTCAGATGTTGAAAT-------------------A......................................................................................................................................................................................................................................2711.00100000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGATGA----------------------------------------TAAAAATAA-----------------------------------------------------------------------------TTTAACA..........................................................................2411.00100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCGTCCAGGAGAGCAGCTGCA.......2311.00100000000000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTTTTTAGCGTCCAGGAGAGCAGC...........2911.00100000001000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTCTGAATTGCAGTTTTTAGCGT........................2711.00100000000000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGGTATTCTGAATTGCAGTTT...............................2411.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAGAGCAGCTGCCGTCGT..2111.00100000000000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGTTTTTAGCGTCCAGGA..................2311.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATAGGTATTCTGAATTGCAGTTTTT.............................2811.00100000000000010000
................................................................................................................................................................................................................................................................................................................................................................TCATTTG-ATATTTGATAATATTTA................................................................................................................................................................................................................................................................................................2411.00100000000000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGGTATTCTGAATTGCAGTTTTT.............................2611.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGTATTCTGAATTGCAGTTTTTAG...........................2611.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCTGAATTGCAGTTTTTAGC..........................2411.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAATTGCAGTTTTTAGCGTAA......................2511.00100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCGTCCAGGAGAGCAGCTGCCGTC....2611.00100000000000010000
.................................................................................................................................................................................................................................................................................................................................................................................................TATATAAGTTAAAGACTCAGATG.................................................................................................................................................................................................................................................................2311.00100000000000010000
droSec2
TTTCTTTCTCCC---TAAGTAATAATT------------ATGACC-------ACAAAA-------------------------------------ATGTATACCTAAATACG-----ATATTTTTAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--TAGAG-------------------------ACGATTTATT---TCATTTG-ATATTTGATAATATTTAAGTGTCTTTAAATAAGTTAAAGACTCAGATGTTGAAAT-------------------AAT---------ACTTATAGATGA----------------------------------------TAAAAATAA-----------------------------------------------------------------------------TTTAACAAAAAATGTATTTTATTTTCTATAGGTATTCTGAATTGCAGTTTTTAGCGTCCAGGAGAGCAGCTGCCGTCGCTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
TTTCTTTCTCCC---TAAGTAAAAATG------------ATGATT-------ACAAAA-------------------------------------ATGTAAACCCAAATACG-----AGATTTTTGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--GATAG-------------------------ACGATTTATA---GTACT--------------------------------------------------------TA-------------------CGC---------ACTTATAGATGA----------------------------------------TAAACAAAA-----------------------------------------------------------------------------TTTAACAAAAAATTTATTTTATTTCCTATAGGTATTCTGAATTGCAGTTTTTAGCGTCCAGGAGAGCAGCTGCCGTCGCTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCGTCCAGGAGAGCAGCTGCCGTC....27118.00180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000046000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021400000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCGTCCAGGAGAGCAGCTGCCGT.....25112.001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGGAGAGCAGCTGCCGTCGCT.24110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000001000000000012400000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCGTCCAGGAGAGCAGCTGCCGTC....2618.0080000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000010000000000110000000000000000010100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAGCGTCCAGGAGAGCAGCTGCC.......2718.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTTTTAGCGTCCAGGAGAGCAGC...........2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000021100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAGCGTCCAGGAGAGCAGCTGC........2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000002000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGCGTCCAGGAGAGCAGCTGC........2414.0040000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000200000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGGAGAGCAGCTGCCGTCGCTG2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGCGTCCAGGAGAGCAGCTGCCGTC....2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGCGTCCAGGAGAGCAGCTGCCG......2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTTTTAGCGTCCAGGAGAGCAGC...........2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCGTCCAGGAGAGCAGCTGCCG......2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTAGCGTCCAGGAGAGCAGC...........2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTTTTTAGCGTCCAGGAGAGCAGC...........2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAGCGTCCAGGAGAGCAGC...........2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAGCGTCCAGGAGAGCAGCTGCCGT.....2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATTGCAGTTTTTAGCGTCCAGGAGA................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAGCGTCCAGGAGAGCAGCTGCCGTC....2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGAGAGCAGCTGCCGTCGC..2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTTTTTAGCGTCCAGGAGAGCA.............2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCGTCCAGGAGAGCAGCTGCCGTCGC..2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTTTTTAGCGTCCAGGAGAGC..............2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAGAGCAGCTGCCGTCGCTG2312.0020000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................TTGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--GATAG-------------------------ACGATTTATA---GTAC.....................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCGTCCAGGAGAGCAGCTGCCG......2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTAGCGTCCAGGAGAGC..............2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTTTTTAGCGTCCAGGAGAGCA.............2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCGTCCAGGAGAGCAGCTGC........2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTTTAGCGTCCAGGAGAGCAGC...........2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000001000000000000000000000000
...........................................................................................................................TTGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--GATAG-------------------------ACGATTTATA---GTAA.....................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAGCGTCCAGGAGAGCAGCT..........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCGTCCAGGAGAGCAGCTGC........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGGTATTCTGAATTGCAGTT................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................TTTTTGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--GATAG-------------------------ACGATTTA..............................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCCAGGAGAGCAGCTGCCGTCGCTG2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
..............................................................................................................................GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--GATAG-------------------------ACGATTTAT.............................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTTTTTAGCGTCCAGGAGA................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGAATTGCAGTTTTTAGCGTC.......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TTTTGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--GATAG-------------------------ACGAT.................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGAGAGCAGCTGCCGTCGCTG2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCCAGGAGAGCAGCTGCCGTCGCT.2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTGAATTGCAGTTTTTA............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAGCGTCCAGGAGAGCAGCTGC........2511.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................ATACG-----AGATTTTTGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--GA..................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..........................................................................................................................TTTGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--GATAG-------------------------ACGATTTATA---G........................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................AGATTTTTGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--GATAG-------------------------AC....................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTAGCGTCCAGGAGAGCAG............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGTTTTTAGCGTCCAGGAGA................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAATTGCAGTTTTT.............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGTTTTTAGCGTCCAGGAGAGCA.............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTCCAGGAGAGCAGCTGCCGTC....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTATAGGTATTCTGAATTGCAGT.................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TTTCTTTCTCCC---TAAGTAAAAATG------------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TTTGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--GATAG-------------------------ACGATTTAT.............................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTCTGAATTGCAGTTT...............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..................GTAAAAATG------------ATGATT-------ACAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................G-----AGATTTTTGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--GATAG-------------------------......................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGCGTCCAGGAGAGCAGCTGCC.......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................T--GATAG-------------------------ACGATTTATA---GTACT--------------------------------------------------------............................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTTTTAGCGTCCAGGAGAGCA.............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--GATAG-------------------------ACGATTT...............................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAATTGCAGTTTTTAGCG.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGGAGAGCAGCTGCCGTC....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGAGAGCAGCTGCCGTC....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCAGTTTTTAGCGTCCAGGAGA................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTTTTTAGCGTCCAGGAGAGCAA............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTTTTTAGCGTCCAGGAGAGCAG............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAGTTTTTAGCGTCCAGGAG.................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAGCGTCCAGGAGAGCAGCTGCCGT.....2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAGCGTCCAGGAGAGCAGCTGCC.......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGAGAGCAGCTGCCGTCGCTG2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAATTGCAGTTTTTAGCGTC.......................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGAATTGCAGTTTTTAGCGTCCAGG...................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGCGTCCAGGAGAGCAGCTGCCGT.....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGAGAGCAGCTGCCGTCGCTA2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TACG-----AGATTTTTGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--G...................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCCTATAGGTATTCTGA.........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................................TTTTGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAT--GATAG-------------------------GA....................................................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
droEre2
TCCCTCCGTAAA---CGGGCGGAGATG------------GGTATA-------CG-CGG-------------------------------------GTA------TAAACACG-----ATATTTTTACCTGATTTTCTTTTTCGTAGAGACGTTCATCTGATCACATAATTT-----------------------------TTAAT------------------------TAAAAT--ATGCTGCGACCAAAATGCACTCGTATTGATTAAGCTTAAGTCGTATCTGTTTAAATAATACTAACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAA---AA------------------------------------------------------------------------TT-TA---CCCAAAAAATGTATTTATTTTTCTATAGGTATTCTGAATTGCAGTTTTTAGCATCCAGACGAGCAGCTGCAGTCGCTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCAGACGAGCAGCTGCAG......2115.0050000005
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCTGAATTGCAGTTTTTAGC..........................2411.0010100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTGAATTGCAGTTTTTAGCATCC......................2711.0011000000
droYak3
GTCTGTAATAAC---TGAACAAAAAAT------------TTTATC-------AACAAA-------------------------------------ATTTAAACG-CAACAAA-----TTTCTTGTATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTC--AAGAT-------------------------ATTATTTACTAACTTTTTTT-ATTTTTAATTATTTTGTAGTATTTTTTTATGAATTAATAATGAAAATGC-----------------------------------------------------------------------------------------ACCTCAAAA------------------------CAATGCCA---------------------------CAGCTTATTACAACCA--GT--------------------TTGTTACTAATGTTAT----ATTTTC--------------------------------TSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
TGTAGATATCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATAATTAT--------AAAAAATAT--------------------------------AAATTATTTTTCTGTAGATATTCTGAATTGCAGTATCTAGCATCCAGAAGAGCTGCAGCCGTTGCTGSizeHit CountTotal NormTotal
No Reads
droBia1
TTTCCTTCACTG---CGTTGCAAACTTCTGACTGAAAACA----------------AA-------------------------------------GTTAATACCATAATA------------------------------------------------------------------------------------------ATAAT------------------------TAAAAC--ATGT----------------TT-CGT----------------------------------------TTGT--TTTAA-------------------------ACCATTTTTA---TTTCT----------AAAAAATTAACATGCCTTTTTGTTTGT----------------------------------------------------AGCTATA-A------------------------------------------------------------------------------------TTATAATCACTAATTAAGTAAATGTTTTGTTTCTGT--------------------------TCTTAATCCATTTGGTGTTCTTAATT-------------------------------------GSizeHit CountTotal NormTotal
No Reads
droTak1
CTTCCTTCTACC---TGTTACATACTTTTGCACGAA--------------------TC-------------------------------------TAGTATACCCTTTTACT-----CTA----C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAG-----TAAC----------------------------------GGGTATAA---AAATGTG-TTATTTAAAAATGTTTAAATGT-------------TAAGTGTTAAATGTTTTAAA-------------------TGT---------AATTAAATATAA----------------------------------------TATGCAAAA----------GAAAA------------------------------------------------------------------AACCAAGTTACATTTTATTT--------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droEle1
ATTTTTTGATGG---ACTTA----------------------------------------------------------------------------------------------------TC------------------------------------------------T-----------------------------TATTT------------------------AAAA--TTACACCACAAAGAAAATTCAATT-CATTAGTTTTGCACAACTTA--ATCCTTAAATTAAAAATAACT-------------------------------TTGTGAT-----------------------ATTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA-AATTGA--------AAAATGTTT--------------------------------ATTTTCTTTTTCTGTAGATACTCTGAATTGCAGTTCCTAGCATCCAGACGAGCTGCTGCCGTGGCTGSizeHit CountTotal NormTotal
No Reads
droRho1
TCTCCTTTACTG---CTTTGCAAACTTTTGACTGAAATTATAATACCCTCTTCA-AGGGTATAATGATGACTTCTTTAATTATGACATGGCATCAATATGTTTTCAATAACA-----AAATTATTATA-----------------------------------------------------------------------------TAATTAAACTGAAAAAATATTTAT-----------------------------------------------------------------------------T--ATTCC-------------------------ATCATTTTTA---TGAACAT-AAT-------------------ATTTTTATAAGTATAAGT--------GTAGTGCGTTGATGCGATTTTGAAATAAA---------ATTTCTATTTCA----------------------------------------AATTTACAA-----------------------------------------------------------------------------GATACAAAATATTATCTTTATTTTGTTAAAATCGTTTTCAATAGTTGT--------------------------------TSizeHit CountTotal NormTotal
No Reads
droFic1
TTTGATATTTGC---AATAACTTAATCTTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAACTAATCTAACTGTTAATA-------------------AAC---------TACAATAAGTG-----------------------------------------------------------------------------------------------------------------------------------AAATATATTGCATTTATTTTTCTGTAGATATTCTGAATTGCAGTTTTTAGCGTCCAGACGAGCTGCTGCTGTGGCTGSizeHit CountTotal NormTotal
No Reads
droKik1
AAATCATAACTT---GGCCAAAAAGT---------------------------------------------------------------------GCATTAATTTCAATTCGGACAGCTGTTCTGAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAT--TTTTA-------------------------ATGAATTAAT---AAATTTGCATAGGTTATTTAATTGAAGTATTTATCCATAATTTAATAAAAAAATTATT------------------------------------------------------------------------------------------TGGAAAA----------GGTAAAACCTAAAA--ATAGCA---------------------------TAA----------CT-CGTCTAAAAAATTACTTATTTTAATTCGGAAAGCTGTTCTGAGTT--AGTTTTT----------------------------ASizeHit CountTotal NormTotal
No Reads
droAna3
TTTATTTTTTTT---TTTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--TTTTG-------------------------ATATTTTTTG---TCTTTA----------------------------ATATAATTTGACGTGTGATATTTTGACGT-------------------ACT---------GATTAGATTTAGTAAAAGTAA------------------------------------------------------------------------ATAAAATAAG--------TAAAAGTAA--------------------------------AAATCATTTTTATATAAATGTTGTAAATTATTGTT--------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TAAATCTTAATA---CC----------------------------------------------------------------------------------------------------CTCTCTAAGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGC--AAGAGCTTATTTCCATTTACTAACATTTTAACAATT--------------------TGT-------------------TAAATTT------------CT-----------------------------ATTTCTGTA---------------------GCTAAACACTAGAAGAGGA------------AATATGAAA------------------------TAATACTT---------------------------TGAATCTGTACAAATA-GGTTTATCAAAAATGCATTTCA-----------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
dp5
ACAAAAATAGTG---TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATGTTACATGTTACAGATACTCGGAACTACAATTCCTAGCATCTAGGCGAGCAGCAGCTGTAGCAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATTCCTAGCATCTAGGC..................2011.0010010000000
droPer2
ATTCCTTCTGGA---CGTTACACACATCCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTACCACAAATCTAATATACCC-CAATACTCATTTT----------------------GAG-----TATCGGGTATAATTATCTGTACAAAACAACTGAATGATAATT--------------------TAA-------------------TATAAAT------------TG-----------------------------TTAGAAATA---------------------GTTAAATAGTAGAATAAGAATTTGATCATAATAAAAATTG-----------------------------------------------------------------------------TTTATCAAAAAATTTGTTTTAT------------------ATTTTTAT--------------------------------ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................GTTACACACATCCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTACCACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
.............................................................................................................................................................................................................................................TTACCACAAATCTAATATACCC-CA...................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
..TCCTTCTGGA---CGTTACACACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
droWil2
TACCATTCGGTTCACCATATAGTCTCA------------ATAAAT-------ATATAT-------------------------------------ATATATACTCTACTGCG-----AAACTTTGTTCTAGAATTATTTGGAGTGGGTAATTTCTCATTTCTTTATAATTTTTAATAATAGTAATAAGAAATAATAATCA-----TAAATTGAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAT-------------------AAT---------ATGTATAAATAA----------------------------------------AAAAAGAAA-----------------------------------------------------------------------------ATGAACAAATA---------------------------------------------------------------------ASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------AAT---------ATGTATAAATAA----------------------------------------AAAAAGAAA-----------------------------------------------------------------------------A................................................................................2680.13100010
.................................................................................................ATATACTCTACTGCG-----AAACTTTGTTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27160.06101000
..........................................................................................................ACTGCG-----AAACTTTGTTCTAGAATTATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27170.06101000
.....................................................................................................ACTCTACTGCG-----AAACTTTGTTCTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24170.06101000
.........................................................................................................................TTTGTTCTAGAATTATTTGGAGTGGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27180.06101000
...........................................................................................................................TGTTCTAGAATTATTTGGAGTGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24190.05101000
TACCATTCGGTTCACCATAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
.........................................................................................................................TTTGTTCTAGAATTATTTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
droVir3
TAGCTCGTTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTCTAACCATTCTCTACT--TTTTATTTCTATTAATGATGCAAATTTTGAATA-------------------GAT---------ATCAATGCAAGA----------------------------------------TAAAAATTG-----------------------------------------------------------------------------TTT-----------------------------------------------------------------------------ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................TTAATGATGCAAATTTTGAATA-------------------GAT---------...........................................................................................................................................................................................................................25202.95590257000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TTAATGATGCAAATTTTGAATA-------------------GAT---------A..........................................................................................................................................................................................................................26200.60120000000000000000000000000000000000000012000000000000000000000000
TAGCTCGTTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTCTAACCATTCTC.................................................................................................................................................................................................................................................................................................2740.502000000000000000000000001000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATGCAAGA----------------------------------------TAAAAATTG-----------------------------------------------------------------------------T................................................................................21200.255000000000000000000000000000000005000000000000000000000000000000
TAGCTCGTTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTCTAACCATT....................................................................................................................................................................................................................................................................................................2440.251000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TAATGATGCAAATTTTGAA............................................................................................................................................................................................................................................................19200.102002000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TTAATGATGCAAATTTTGA.............................................................................................................................................................................................................................................................19200.102000000000000000000000000000000000000200000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................TCTCTACT--TTTTATTTCTATTAATGATGC......................................................................................................................................................................................................................................................................29200.051000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATGCAAGA----------------------------------------TAAAAAT................................................................................................................................................................18200.051000000000000000000000000000000000001000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TTAATGATGCAAATTTTGAATA-------------------GAT---------TAA........................................................................................................................................................................................................................28200.051000000000000000000000000010000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------ATCAATGCAAGA----------------------------------------TAAAAATTG-----------------------------------------------------------------------------TT...............................................................................24200.051000010000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TAATGATGCAAATTTTGAATA-------------------GAT---------T..........................................................................................................................................................................................................................25200.051000000000000000000000000100000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAATTTTGAATA-------------------GAT---------ATCAATGC...................................................................................................................................................................................................................27200.051000000000000000000000000010000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TATTAATGATGCAAATTTTGAATA-------------------GAT---------...........................................................................................................................................................................................................................27200.051000000000000000000000000000000000000010000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TTAATGATGCAAATTTTGAATA-------------------GAT---------T..........................................................................................................................................................................................................................26200.051000000000000000000000000000000001000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TTAATGATGCAAATTTTGAATA-------------------GA.....................................................................................................................................................................................................................................24200.051000000000000000000000001000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATGCAAGA----------------------------------------TAAAAATTG-----------------------------------------------------------------------------.................................................................................20200.051000000000000000000000000001000000000000000000000000000000000000
droMoj3
AATAATTATGAA---TCATATAAAATT------------AAGGTA-------AAATAA-------------------------------------TAATA---------------------------------------------------------------------------------------------------------TAAATTCAGATAAAATAAATTTAT-----------------------------------------------------------------------------T--TATTG-------------------------AATATAAATA---TGAATAA-TTAATTTATATAAATTCGTTTAAATTA--------------------------------------------------------------------------------G-----TAGTAAAATAAAATATT------------TTATGTTTATGTATTCATTAAAGCTAAAA--ATAA------------------------------AA----------TT-CA---TTTAAATGATTTATTTTATTTTATATAGATATTTT-------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TTTCTTTTGTTT---TGTTTAATAATT------------ATAAAA-------ATACAT-------------------------------------ATGTATATTGACATATA-----ATAATTTGTAA--------------------------------------------------------------------------------AA---------------------------------------------------------------------------------------------TGAC--TAGA------------------------TGATGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 03:49 PM