ID:

dsi_20751

 Coordinate:

2l:600555-600704 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [2l_599341_601692_+]; CDS [2l_599341_601692_+]

Repeatable elements

NameClassFamilyStrand
GA-richLow_complexityLow_complexity+
GA-richLow_complexityLow_complexity+

Sense Strand Reads

##########################################################################################################################################################################################################################################################
AAAAGAAAGGAAGAGGAAAGAAGAAGAGAAGAGAAAAGAAGAAGAGAAGAGCAGAGAAGAAGAGAAGAGGAAGAGGAAAGAAGAAAGGAAGAGAAAAGAAGAAGAGAAGAGCAAAGAAGAAGAGAAGAGGAAGAGGAAGAGGAGAGAAGAAAGGAAGAGGAGAGGAAAGAAGAGGAAAGAAGAAAAGAGAAAAGAAGAAGAGAAGAGAAAAGAAGAAGAGAAGAGGAAAGAAGAAGAGAAGAGGAACGAA
**************************************************......................................................................................................................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 O002
Head
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
.......AGGAAGTGGACAGAAGAAGCGA............................................................................................................................................................................................................................. 22 3 2 3.00 6 6 0 0 0 0 0 0 0 0 0
....................................................................................AAGGAAGAGAAAAAGTGAAGAGAA.............................................................................................................................................. 24 3 2 1.50 3 0 0 3 0 0 0 0 0 0 0
........GGAAGTGGACAGAAGAAGCGA............................................................................................................................................................................................................................. 21 3 7 1.29 9 9 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................AAGAGAAAAGACGAATAGAAGAAA.......................................... 24 3 2 1.00 2 0 2 0 0 0 0 0 0 0 0
................................................................................................................................................................................................AGAAGAAGAGAAGAGAAAAG...................................... 20 0 2 1.00 2 0 0 0 2 0 0 0 0 0 0
........GGAAGTGGACAGAAGAAGCGAA............................................................................................................................................................................................................................ 22 3 3 1.00 3 3 0 0 0 0 0 0 0 0 0
..................AGAAGAAGAGAAGAGAAAAG.................................................................................................................................................................................................................... 20 0 2 1.00 2 0 0 0 2 0 0 0 0 0 0
....................................................................................AAGGAAGAGAAAAAGTGAAGAGA............................................................................................................................................... 23 3 2 1.00 2 0 0 2 0 0 0 0 0 0 0
..................................................GCAGAGAAGAAGAGAAGA...................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................................AAGAGCAAAGAATAAGAGAACAGG........................................................................................................................ 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......AGGAAGTGGACAGAAGAAGCGAA............................................................................................................................................................................................................................ 23 3 2 1.00 2 2 0 0 0 0 0 0 0 0 0
.......AGGAAGTGGACAGAAGAAGCG.............................................................................................................................................................................................................................. 21 3 8 0.63 5 5 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................GGAAAGATGAAAAGA.............................................................. 15 1 20 0.60 12 3 0 8 0 0 0 0 0 1 0
.......................................................................................................................................................................TGAAGTGGAAAGTAGAAAAGAG............................................................. 22 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................AAGAGACAAGAAAAGAAGAAAAGAAG........................... 26 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0
.......................AAGAGACAAGAAAAGAAGAAAAGAAG......................................................................................................................................................................................................... 26 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AGAAGAGGCAAGAAGTAGATAA.......... 22 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................CCAGGAAAGGAAGAGGAGAGG..................................................................................... 21 3 13 0.15 2 0 2 0 0 0 0 0 0 0 0
..................................................................................................................................AAGAGGGACAGGAGAGGAGAA................................................................................................... 21 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0
....................................................................................AAGGAAGAGAAAAAGTGAAGAG................................................................................................................................................ 22 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................TAGAACAGGAAGAGCAAGAGGA........................................................................................................... 22 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................TATGGAAGAGGAGAGGCAAGA................................................................................ 21 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................AGGATGGGGAAGAGAAGAGAA...................................................................................................... 21 3 9 0.11 1 0 0 0 0 0 0 0 1 0 0
..........................................................................................................AAAAGCAAAGAAGAAGA............................................................................................................................... 17 1 20 0.10 2 0 0 0 0 0 0 1 0 0 1
............CAGGAAAGAACAAGAGACG........................................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AGGAGAGAAGAAGAGA........... 16 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................GGACAGAAGAAAAGA.............................................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................................CAGGAAAGAACAAGAGACG......... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................TGAGGAAGTGGAGAGAAAAA................................................................................................... 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.................................................AGGAGAGAAGAAGAGA......................................................................................................................................................................................... 16 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.............AGGAGAGAAGAAGAGA............................................................................................................................................................................................................................. 16 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0
..AATAAAGGAAGAGGA......................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................AATAAAGGAAGAGGA......................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................................AAAGCAAAGAAGAAGA............................................................................................................................... 16 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

TTTTCTTTCCTTCTCCTTTCTTCTTCTCTTCTCTTTTCTTCTTCTCTTCTCGTCTCTTCTTCTCTTCTCCTTCTCCTTTCTTCTTTCCTTCTCTTTTCTTCTTCTCTTCTCGTTTCTTCTTCTCTTCTCCTTCTCCTTCTCCTCTCTTCTTTCCTTCTCCTCTCCTTTCTTCTCCTTTCTTCTTTTCTCTTTTCTTCTTCTCTTCTCTTTTCTTCTTCTCTTCTCCTTTCTTCTTCTCTTCTCCTTGCTT
**************************************************......................................................................................................................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
.......TCCTTCACCTGTCTTCTTCGC.............................................................................................................................................................................................................................. 21 3 8 0.25 2 2 0 0
........CCTTCACCTGTCTTCTTCGCT............................................................................................................................................................................................................................. 21 3 7 0.14 1 1 0 0
......................................................................................CCTTCTCTATTCTTCTT................................................................................................................................................... 17 1 8 0.13 1 0 1 0
...............CTTTCCTCCTCTCTTCTC......................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 1
.................................................................................................................................................................................................................................CTTTCCTCCTCTCTTCTC....... 18 2 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:600505-600754 + dsi_20751 AAAA--GAAAGGAA-GAGGAAAGAAGAAGAGA---AGAG------------------------AA--AA---GAAGAA--GAGA--A---GAGC-AGAGAAGAAGAGAAGAGGAAG------AGGAAAGAAGAA---AGGAAGA-----GAAAA------------GAAGAAGAGAAGAGCAA---AGA-------AGAA---G---------AGAAGAG----------GAAG-------AG-----------------GAAGAGGAGAGAA--G----------------AAAGGAAGAGGAGAGGA---AAGAAG---------------AGGAAAGA---------AGAAAAGAGAAAAGAAGAAG-------AGAAGAGA-----------------AAAGAAGAAGA------------------GAAGAGGAAAGAAGAAG---------AGAAGAG----GAACGAA
droSec2 scaffold_14:609136-609373 + AGGA--AAAAAGAA-GTGGAAAGAAAAAGAGA---AGAG------------------------GA--AA---GAAGAA--AAG--------AGA-AAAGAAGAAGAGAAGAGGAAG------AGGAAAGAAGAA---AGGAAGA-----GGAAA------------GAAGAAAGGAAGAAGAA---AGA-------AGAA---A---------AGAAGAA----------GA------------------------------------AAAAA--G----------------AAAGGAAGAGGAAA---------------------------------------GAAGAAGAGAAGAGAAAAGAAGAAG-------AGAAGAGA-----------------AAAGAAGAAGAGAAGAGGAAAGAAGAACAGAAGAGG---AACGAAG---------AGAAGAC----GAAAGAA
dm3 chr2L:627433-627670 + AGAA--GAAGAGAA-GAGGAAAGAAAAAGAGA---AGAG------------------------GA--AA---GAAGAA--GAGA--A---GAGG-AAAGAAGAAGAGAAGAGGA------------AAGAAGAA---GAGAAGA-----GGAAA------------GAAGAAGAGAAGAGGAA---AAA-------AGAA---A---------GGAAGAG----------GAAC-GAAGAAAA-----------------GAAGAGGAGAGAA--A----------------AA------------------GAGAAG---------------AG------GAAAAAAGAAAAGAAGAGGAGAGAAAAAG-------AGAAGAGG-----------------AAAGAAGAAGA------------------GAAGAGGAAAAAAGAAA---------GGAAGAG----GAACGAA
droEre2 scaffold_4929:685326-685578 + AGGA--GAAAAGAA-GAGGCAAGAAGAAAAGA---AGAG------------------------GA--AA---GGAGAA--AAGA--A---GAGG-AAAAAAGAAAGGAAGAGG------------AAAAAAGAA---AGGAAGA-----GGAAA------------GAAAAAGGGAAGAAGAA---AGG-------AAAA---A---------GGAGGAG----------GAAC-GAAGAAAG-----------------GAAGAAGAAAGAA--G----------------AAAAGAAGAGGAAAGGAGAAAAGAAG---------------AGGAAAGG---------AGAAAAGAGGCAAGAAGAAA-------AGAAGAGG-----------------AAAGGAGAAAA------------------GAAGAGGAAAAAAGAAA---------GGAAGAG----GAAAGAA
droYak3 2L:616841-617089 + AGAA--GAAAAGAA-GAGCAAAGGAGAAGGGA---AGAA------------------------GA--AA---GAAGAG--AAGA--A---GAAG-AAAGAAGGAGAGAAGAAG------------AAAGAAGAG---AAGAAGA-----AGAAA------------GAAGAAGGAAAGAGGAA---------------------GAAGAAGAAAGAAGAA--GGAAAGAGGA----------A-----------------GAAGAAGAAAGAA-----GGAA----------------AGAAAAAAGGA---GACAAG---------------AG------GCAAGAAGAAAAGAAGCGGAAAGAAGAAA-------AGAACAGG-----------------AAAGAAGAAGG------------------GAAGAGGAAAGAAAAAG---------AAAAGA-----GGAAGAA
droEug1 scf7180000409554:1352043-1352291 + AAGA--GGAAAGAA-GAGGAGAAAAGGAGAGA---AGAG------------------------GA--AA---AAAGAA--GAAAGAA---GAGG-AGAAGAGGAGAGAAGAGGAAA---------AAAAGAGAA---AAGAAGA-----GGAAA------------AGAGGAGAGAAGAGGAAAAAAGA---------GA---G---------AGAAGAG----------GAAA--------A-----------------AAAGAGGAGAGAA-----GAGG----------------AAAAAAGAGGA---AAGAAG---------------AG------GAAAAGAGGAGGGAAGACGAAAGAAGGAG-------AGAGGAGG-----------------AAAGGAGGAGG------------------GAAGAGGAAAGGAGGAG---------GGAAGAG----GAAAGGA
droBia1 scf7180000302411:90970-91225 + AAGA--GGAGAGAA-GAGGAAAGAATAAGACA---GGAG------------------------GA--GGCAAGGAGGA--GAGA--A---GAGG-AAAGAATAAGACAAGAGGAGG---------CAAAGAGGA---GAGAAGA-----GGAAA------------GGAGGAGGCAAGAAGAGGAAATA-------AGAA---G---------ACAAGAG----------GAGG--------C-----------------GAAGAGGAGAGAA-----GAGGAAAGAATAAGA-----------CAGGA----CGAAG---------------C---------AAAGAGGAGAGAAGAGGAAAGAATAAGACA----GGAGGAGG-----------------CAAAGAGGAGA------------------GAAGAGGAAAGAATAAG---------ACAGGAG----GAGGCAA
droTak1 scf7180000415261:254363-254602 - GAAC--GAACGGAA-GAGAAAGGAAGAAGAAA---AAAG------------------------AA--A----GAAGAA--GAAA--G---AAGA----AAAAGAAGGAAGAAGAAA------AAGAAAAAAGAA---GAAAAAG------GAAAGAAGAGGAA--CGGAAGAGAAAGGAAGAA--------------GAA---A---------GAAAGAA----------GA------------------------------------AGAAA--G----------------AAAGAAAGAAGAA--GA---AAAAAG---------------AAAAAAGA---------AGAAAAAAGGAAAGAAGAGGAAC----GGAAGAGA-----------------AAGGAAGAAGA------------------AAGAAAGAAAGAAGAAG---------AAAGAAA----GAAAAAA
droEle1 scf7180000491026:174024-174265 - GAAA--GAAGAGGA-AGAAA--AAAGAAGGAA---AGAA------------------GAA---GA--AG---AAAAAG--AAGG--A---AAGAAGAAG-AAGAAAGAAAAGGAAA-----GAA-------GA--------AGA-----AGAAA------------AGAAAAGGAAAGAAGAA----GAAGAAAAGAAAA---G---------GAAAGAA----------GA----------A-----------------GAAGAAAAGAAAA----------------------------G-----GA---AAGAAGAA-GAAGAAAAGAAGAGGAAAG------AA---G---------AAGAAGAAA-------AGAAAAGGAAAGAAGAAGA------AGA---AAAGA-------------AAAG-GAAACAGAA---AGAAA---------AAGAAAA----AAAGAAA
droRho1 scf7180000779917:370-604 - AAGA--AAAAGGAA-AAGAAAAGAGGAACAAG---AAAA------------------------CA--GG---AAAAGA--AAAC-------AGA------AAGAGAAAAACAG------------GAACAAGAG---AAAAAGG-----AAATA------------GAAAAATAGGAAAAGAA---------------------AAAGAGGA-AAAAGAA----------AAAC-AAGGAAAA-----------------AGAAAAGACAGGA-----AAAA----------------GAAAAAGAGGA---AAAGAA---------------AA------A---------CAGGAAAGAGAAAAACTAG----------AAAAA---------GAAAA---ACA---GGAAA-------------GA---GAAAAACAAGAAAAAGA---------AAAACAA----GAAGGAA
droFic1 scf7180000453904:906866-907101 + AAAT--GAACGGAA-AAAGGAAGAGGAAGAGA---AAAT------------------------GA--AA---AAGGAA--GAGG-AA---GAGA-AGAGGAGAAAGGAAGAGGAAG------AG-------GAA---GAGAAAA-----GGAAA---AGGAAG--CGGAAGAGAAA-----------AG-------AAAA---A---------GGAAGAG----------GAAG-------------AGAAAAGAAAAAGGA------------------------------------AGAGAAAAGGA---AAAAGGAAG------------AGA------AA-------AAGAAAAAGGAAGAGGAAG-------AGAAAAGG-----------------AAAAAGGAAGA--------------G---GAAGAGAAAAGAAAAAG---------AAAAGGA----AGAGGAA
droKik1 scf7180000302469:1379401-1379650 - AAAG--GTAGAAAA-GAGGAAGGTAGAGAAGA---GAGG------------------------TA--AA---GAAGAA--AGGT--A---GAGA----GAAGAAAGGTAGAGAGAAGAAAGGTAGAGAGAAGAA---AGGTAGA-----GA---------------GAAGAAAGGTAGAGA------GA-------AGAA---A---------GGTAGAGATAAG-----------------A-----------------AAGGTAGAGGGAA--G----------------AAAGGTAGAGGGAAGAA---AGGTAG---------------AGGGAAGA---------AGAAAAGAGAAAAGAAAGGT-AG----AGAGAAGA-----------------AAGGTAAAAGA------------------GAAACGTAA---AGAAG---------AATCGTGGAAAGAAACCA
droAna3 scaffold_13027:10063-10301 - GAAA--AGGAGGGA-GGAAAGGGAAGGGGAGA---AGAG------------------------AA--AG---GAAAAA--AGGA--A----AGAGAAAG-AAAAGAAAAGAGAAAAAGG---AAGAAAAAAGGA---GGGGAGA-----AGAGA------------GG-GGAGAG---AAGAG----GA-------GGGA---G---------AGAAGGG----------GA------------------------------------GGGAG--------GGGAGGAGAAGA-----------GAGGAGAGGGGAAG----------------------------AAGAAGAGAAGAGAGGAGAAAGAG----------AGGAG---------GGAGAAGAGAGAA-AAAGG-------------AAA--AGAGAGG-AAAGAAAGG---------AGGGAAA----GAAGAAA
droBip1 scf7180000396006:26437-26690 + AAAA--GCTTAAGGAGAAGGAAAAAGAAGAAA---AGCT------------------------CA--AG---GAGAAA--GAAA------GATT--AGA-ACGAATTAAAGAGAAG-----GAA-------CG--------GGA-----GGAAAG----------GATCAAGGAGAAGGAGAA---AGA---GGAAAGAATTAA---------AGAAGAG----------A----------------------------------AATTAAAA--G----AA------------AAGGAAAAGGAGGAA---AAG------CAAAAGGAGAAGGAGAAAG------AA---A--AGGCGGAAAAGCTCAA-------AGAATTGG-------AAAGG-----GAAAAGGAAGC------------------GAAGCTTAA---AGAGAAAGAACGCGAGGAAAG----AGAGGCT
dp5 4_group4:1966099-1966356 + AAAA--GAAAGGAA-AAAGAGAGACAAAAGAG---AGAC------------------------AAAAGA---GACTAA--AAAG--A---GAGA-AAAAAAGGGAAAAAGAGAAAA------AA---AAGAGAAAAAAGAAAGA-----AGAAA------------GAGAGAAAA---AAGAGAGAATA-------AAGA---G---------AGAAAAA----------TAAGTGAAAAAAGAAAGAAAAAAGAAAGAAAA------------------------------------AAAAAGAAAGA---AAAAAAAGG------------AAA------AA-------AAGGAAAAAGAGAGATAAA-------AGAGAGAC-----A-----------AAAGAGAGAAA------------------AAAGAGAGAATAAAGAG---------AGAAAAA----AATAGAA
droPer2 scaffold_661:3075-3309 + AAAA--GAAAGGCT-TCGAAAAGAATAGGGAA---G-AG------------------------AG--CG---GAAGAG--GAGA--G---GAGA----GAGAGAGAGCGAGAGAGA------------AAGGAG---AAAGAGA-----GT---------------GAAGAGTGAG-----------AG-------AAAA---AGGAGGAGAGAGAAAGA----------GAGT-GAGAGAAA-----------------AAGGAGGAG-AGA--G----AA------------AGGAGAAAGAGAGTG---AAGAGT---------------GA----------------GAGAAAAAGGAGGAGAGAG-------AAAGGAGA-----------------AAG---AGAGT-------------GAGAGA---AAAAGGAGAAAGG---------AGAACGG----GAGTGAA
droWil2 scf2_1100000004515:983403-983667 - ATCG--AAAGAAAG-GAAAATGAAAGGAGAGAACAGGAGCGAAAAGAAAGGAAAGAACAGGAGCG--AAAA-GAAAGG--AA-----------------------AGAACAGGA-----GC-GAATAGAAAGGA---AAGAACA-----GGAG------------CGTCAAAGAGAAGAGGAA---AGA-------AAAA---T---------TCGCGAA----------AA----------A-----------------CAAGAAATCGAAA--G----AA------------AGGAAAATGAAAGGA---AAGAAC---------------AGGAGCGA---------AAA-GAAAGGAAAGAACAGGAGCGAATA-GAAAGG-----------------AAA---GAACA--------------GGAGCGAAAAGAAAGGAAAGA---------ACAGGAG----CGTCAAA
droVir3 scaffold_12723:2050319-2050572 + AGAAGAGAAGAGAA-GAGAAGA---GAAGAGA---AGAG------------------------AA--GA---GAAGAGAAGAGAAGAGAAGAGA-AG---AGAAGAGAAGAGAAGAGAAG----------AGAA---GAGAAGAGAAGAGAAGA---------GA-AGAGAAGAGAAGAGAAG-------------AGAA---G---------AGAAGAGAAGAG------------------------------------AAGAGAAGAGAAGAGAAG-----A-----------GAAGAGAAGAGAA---GAGAAG---------------AGAAGAGA---------AGAGAAGAGAAGAGAAGAGA-----AGAGAAGAGA-----------------AGA---GAAGA-------------GAAGAG---AAGAGAAGAGAAG---------AGAAGAG----AAGAGAA
droMoj3 scaffold_3138:352-603 + AAGA--GAAGAGAA-GAGAAGAGAAGAGAAGA---GAAG------------------------AG--A----AGAGAA--GAGAAGAGAAGAGA-AG---AGAAGAGAAGAGAAGAGAAG----------AGAA---GAGAAGAGAAGAGAAGA---------GA-AGAGAAGAGAAGAGAAG-------------AGAA---G---------AGAAGAGAAGAG------------------------------------AAGAGAAGAGAAGAGAAG-----A-----------GAAGAGAAGAGAA---GAGAAG---------------AGAAGAGA---------AGAGAAGAGAAGAGAAGAGA-----AGAGAAGAGA-----------------AGA---GAAGA-------------GAAGAG---AAGAGAAGAGAAG---------AGAAGAG----AAGAGAA
droGri2 scaffold_14822:552384-552621 + AGAA--GAAAAGCT-GAAACAAGAAGAAGAAA---AGTT------------------------AA--AG---GAAGAG--GAAA--C---GATA-CGAGAAGAAAAAAAGAAG------------GAAGAAGAA---AAGAAAA-----AACAA------------GACGAAAATAAGAAGAA---GGA-------AGAA---G---------CCAAGAA----------AAAG-GAAGAAAA-----------------GAAAATGGAAGAA--G----------------TA------------------AAGATC---------------CA------GAAGGATGAAGCAAAGAAGAATGAAGAAG-------AAAAGAAA-----------------CAAGAAGAAAA------------------GAAGAAGGAAGAAGCAA---------AGAAGAA----GGAAGAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AAAA--GAAAGGAA-GAGGAAAGAAGAAGAGA---AGAG------------------------AA--AA---GAAGAA--GAGA--A---GAGC-AGAGAAGAAGAGAAGAGGAAG------AGGAAAGAAGAA---AGGAAGA-----GAAAA------------GAAGAAGAGAAGAGCAA---AGA-------AGAA---G---------AGAAGAG----------GAAG-------AG-----------------GAAGAGGAGAGAA--G----------------AAAGGAAGAGGAGAGGA---AAGAAG---------------AGGAAAGA---------AGAAAAGAGAAAAGAAGAAG-------AGAAGAGA-----------------AAAGAAGAAGA------------------GAAGAGGAAAGAAGAAG---------AGAAGAG----GAACGAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................AGAAGAAG-------AGAAGAGA-----------------AAAG.....................................................................2021.00200002000000000000
.....................AGAAGAAGAGA---AGAG------------------------AA--AA---G..................................................................................................................................................................................................................................................................................................................................................................................................................2021.00200002000000000000
............................................................................................GC-AGAGAAGAAGAGAAGA............................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
droSec2
AGGA--AAAAAGAA-GTGGAAAGAAAAAGAGA---AGAG------------------------GA--AA---GAAGAA--AAG--------AGA-AAAGAAGAAGAGAAGAGGAAG------AGGAAAGAAGAA---AGGAAGA-----GGAAA------------GAAGAAAGGAAGAAGAA---AGA-------AGAA---A---------AGAAGAA----------GA------------------------------------AAAAA--G----------------AAAGGAAGAGGAAA---------------------------------------GAAGAAGAGAAGAGAAAAGAAGAAG-------AGAAGAGA-----------------AAAGAAGAAGAGAAGAGGAAAGAAGAACAGAAGAGG---AACGAAG---------AGAAGAC----GAAAGAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................GAAGAAAGGAAGAAGAA---AA...............................................................................................................................................................................................................................................................................................1930.3310001
.......................................................................................................................................................................................................A---A---------AGAAGAA----------GA------------------------------------AAAAA--G----------------AAAA...................................................................................................................................................................................2140.2510001
dm3
AGAA--GAAGAGAA-GAGGAAAGAAAAAGAGA---AGAG------------------------GA--AA---GAAGAA--GAGA--A---GAGG-AAAGAAGAAGAGAAGAGGA------------AAGAAGAA---GAGAAGA-----GGAAA------------GAAGAAGAGAAGAGGAA---AAA-------AGAA---A---------GGAAGAG----------GAAC-GAAGAAAA-----------------GAAGAGGAGAGAA--A----------------AA------------------GAGAAG---------------AG------GAAAAAAGAAAAGAAGAGGAGAGAAAAAG-------AGAAGAGG-----------------AAAGAAGAAGA------------------GAAGAGGAAAAAAGAAA---------GGAAGAG----GAACGAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................AAAAGAAAAGAAGAGGAGA................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................A--AA---GAAGAA--GAGA--A---GAGG-A...........................................................................................................................................................................................................................................................................................................................................................................................19130.6990000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100112000000000000000
...............................................................................................AAAGAAGAAGAGAAGAGGA------------.............................................................................................................................................................................................................................................................................................................................................................19130.6990000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100112000000000000000
.......................................................................................................................................................AAA------------GAAGAAGAGAAGAGGA.....................................................................................................................................................................................................................................................................................................19130.6990000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100112000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGA------------------GAAGAGGA....................................19130.6990000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100112000000000000000
.................................................................................................................A------------AAGAAGAA---GAGAAGA-----GGA...................................................................................................................................................................................................................................................................................................................................19130.6990000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100112000000000000000
.......................................................................................................................................................AAA------------GAAGAAGAGAAGAGG......................................................................................................................................................................................................................................................................................................18140.4360000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000100000000000000000000100011000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGA------------------GAAGAGG.....................................18140.4360000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000100000000000000000000100011000000000000000
...............................................................................................AAAGAAGAAGAGAAGAGG..........................................................................................................................................................................................................................................................................................................................................................................18140.4360000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000100000000000000000000100011000000000000000
................................................................A--AA---GAAGAA--GAGA--A---GAGG-............................................................................................................................................................................................................................................................................................................................................................................................18140.4360000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000100000000000000000000100011000000000000000
.................................................................................................................A------------AAGAAGAA---GAGAAGA-----GG....................................................................................................................................................................................................................................................................................................................................18140.4360000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000100000000000000000000100011000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................AAAAG-------AGAAGAGG-----------------AAAGAAGC.................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
........................AAAAGAGA---AGAG------------------------GA--AA---GAAGC..............................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................AAGAAAAGAAGAGGAGAG...............................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AAGAAAA-----------------GAAGAGGAGAG............................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................GAAGAGGAGAGAA--A----------------AA------------------GAGAA..............................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................GAAGAGGAGAGAAAAAG-------AGAA..............................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.............................................................................................................................................................................AGAAGAGGAA---AAA-------AGAA---A---------GGA...................................................................................................................................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................A------------------GAAGAGGAAAAAAGAAA---------GGA...............2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................AAAGAAGAGGAGAGAAAAG..........................................................................................................1960.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
droEre2
AGGA--GAAAAGAA-GAGGCAAGAAGAAAAGA---AGAG------------------------GA--AA---GGAGAA--AAGA--A---GAGG-AAAAAAGAAAGGAAGAGG------------AAAAAAGAA---AGGAAGA-----GGAAA------------GAAAAAGGGAAGAAGAA---AGG-------AAAA---A---------GGAGGAG----------GAAC-GAAGAAAG-----------------GAAGAAGAAAGAA--G----------------AAAAGAAGAGGAAAGGAGAAAAGAAG---------------AGGAAAGG---------AGAAAAGAGGCAAGAAGAAA-------AGAAGAGG-----------------AAAGGAGAAAA------------------GAAGAGGAAAAAAGAAA---------GGAAGAG----GAAAGAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
AGAA--GAAAAGAA-GAGCAAAGGAGAAGGGA---AGAA------------------------GA--AA---GAAGAG--AAGA--A---GAAG-AAAGAAGGAGAGAAGAAG------------AAAGAAGAG---AAGAAGA-----AGAAA------------GAAGAAGGAAAGAGGAA---------------------GAAGAAGAAAGAAGAA--GGAAAGAGGA----------A-----------------GAAGAAGAAAGAA-----GGAA----------------AGAAAAAAGGA---GACAAG---------------AG------GCAAGAAGAAAAGAAGCGGAAAGAAGAAA-------AGAACAGG-----------------AAAGAAGAAGG------------------GAAGAGGAAAGAAAAAG---------AAAAGA-----GGAAGAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
AAGA--GGAAAGAA-GAGGAGAAAAGGAGAGA---AGAG------------------------GA--AA---AAAGAA--GAAAGAA---GAGG-AGAAGAGGAGAGAAGAGGAAA---------AAAAGAGAA---AAGAAGA-----GGAAA------------AGAGGAGAGAAGAGGAAAAAAGA---------GA---G---------AGAAGAG----------GAAA--------A-----------------AAAGAGGAGAGAA-----GAGG----------------AAAAAAGAGGA---AAGAAG---------------AG------GAAAAGAGGAGGGAAGACGAAAGAAGGAG-------AGAGGAGG-----------------AAAGGAGGAGG------------------GAAGAGGAAAGGAGGAG---------GGAAGAG----GAAAGGASizeHit CountTotal NormTotal
No Reads
droBia1
AAGA--GGAGAGAA-GAGGAAAGAATAAGACA---GGAG------------------------GA--GGCAAGGAGGA--GAGA--A---GAGG-AAAGAATAAGACAAGAGGAGG---------CAAAGAGGA---GAGAAGA-----GGAAA------------GGAGGAGGCAAGAAGAGGAAATA-------AGAA---G---------ACAAGAG----------GAGG--------C-----------------GAAGAGGAGAGAA-----GAGGAAAGAATAAGA-----------CAGGA----CGAAG---------------C---------AAAGAGGAGAGAAGAGGAAAGAATAAGACA----GGAGGAGG-----------------CAAAGAGGAGA------------------GAAGAGGAAAGAATAAG---------ACAGGAG----GAGGCAASizeHit CountTotal NormTotal
No Reads
droTak1
GAAC--GAACGGAA-GAGAAAGGAAGAAGAAA---AAAG------------------------AA--A----GAAGAA--GAAA--G---AAGA----AAAAGAAGGAAGAAGAAA------AAGAAAAAAGAA---GAAAAAG------GAAAGAAGAGGAA--CGGAAGAGAAAGGAAGAA--------------GAA---A---------GAAAGAA----------GA------------------------------------AGAAA--G----------------AAAGAAAGAAGAA--GA---AAAAAG---------------AAAAAAGA---------AGAAAAAAGGAAAGAAGAGGAAC----GGAAGAGA-----------------AAGGAAGAAGA------------------AAGAAAGAAAGAAGAAG---------AAAGAAA----GAAAAAASizeHit CountTotal NormTotal
No Reads
droEle1
GAAA--GAAGAGGA-AGAAA--AAAGAAGGAA---AGAA------------------GAA---GA--AG---AAAAAG--AAGG--A---AAGAAGAAG-AAGAAAGAAAAGGAAA-----GAA-------GA--------AGA-----AGAAA------------AGAAAAGGAAAGAAGAA----GAAGAAAAGAAAA---G---------GAAAGAA----------GA----------A-----------------GAAGAAAAGAAAA----------------------------G-----GA---AAGAAGAA-GAAGAAAAGAAGAGGAAAG------AA---G---------AAGAAGAAA-------AGAAAAGGAAAGAAGAAGA------AGA---AAAGA-------------AAAG-GAAACAGAA---AGAAA---------AAGAAAA----AAAGAAASizeHit CountTotal NormTotal
No Reads
droRho1
AAGA--AAAAGGAA-AAGAAAAGAGGAACAAG---AAAA------------------------CA--GG---AAAAGA--AAAC-------AGA------AAGAGAAAAACAG------------GAACAAGAG---AAAAAGG-----AAATA------------GAAAAATAGGAAAAGAA---------------------AAAGAGGA-AAAAGAA----------AAAC-AAGGAAAA-----------------AGAAAAGACAGGA-----AAAA----------------GAAAAAGAGGA---AAAGAA---------------AA------A---------CAGGAAAGAGAAAAACTAG----------AAAAA---------GAAAA---ACA---GGAAA-------------GA---GAAAAACAAGAAAAAGA---------AAAACAA----GAAGGAASizeHit CountTotal NormTotal
No Reads
droFic1
AAAT--GAACGGAA-AAAGGAAGAGGAAGAGA---AAAT------------------------GA--AA---AAGGAA--GAGG-AA---GAGA-AGAGGAGAAAGGAAGAGGAAG------AG-------GAA---GAGAAAA-----GGAAA---AGGAAG--CGGAAGAGAAA-----------AG-------AAAA---A---------GGAAGAG----------GAAG-------------AGAAAAGAAAAAGGA------------------------------------AGAGAAAAGGA---AAAAGGAAG------------AGA------AA-------AAGAAAAAGGAAGAGGAAG-------AGAAAAGG-----------------AAAAAGGAAGA--------------G---GAAGAGAAAAGAAAAAG---------AAAAGGA----AGAGGAASizeHit CountTotal NormTotal
No Reads
droKik1
AAAG--GTAGAAAA-GAGGAAGGTAGAGAAGA---GAGG------------------------TA--AA---GAAGAA--AGGT--A---GAGA----GAAGAAAGGTAGAGAGAAGAAAGGTAGAGAGAAGAA---AGGTAGA-----GA---------------GAAGAAAGGTAGAGA------GA-------AGAA---A---------GGTAGAGATAAG-----------------A-----------------AAGGTAGAGGGAA--G----------------AAAGGTAGAGGGAAGAA---AGGTAG---------------AGGGAAGA---------AGAAAAGAGAAAAGAAAGGT-AG----AGAGAAGA-----------------AAGGTAAAAGA------------------GAAACGTAA---AGAAG---------AATCGTGGAAAGAAACCASizeHit CountTotal NormTotal
No Reads
droAna3
GAAA--AGGAGGGA-GGAAAGGGAAGGGGAGA---AGAG------------------------AA--AG---GAAAAA--AGGA--A----AGAGAAAG-AAAAGAAAAGAGAAAAAGG---AAGAAAAAAGGA---GGGGAGA-----AGAGA------------GG-GGAGAG---AAGAG----GA-------GGGA---G---------AGAAGGG----------GA------------------------------------GGGAG--------GGGAGGAGAAGA-----------GAGGAGAGGGGAAG----------------------------AAGAAGAGAAGAGAGGAGAAAGAG----------AGGAG---------GGAGAAGAGAGAA-AAAGG-------------AAA--AGAGAGG-AAAGAAAGG---------AGGGAAA----GAAGAAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................A-----------GAGGAGAGGGGAAG----------------------------AAGAAGAG.........................................................................................................................2311.001010000
...................................................................AG---GAAAAA--AGGA--A----AGAGAAA.........................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.........................................................................AAAAA--AGGA--A----AGAGAAAG-A......................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGG-AAAGAAAGG---------AGGGAAA----.......1911.001100000
......................................................................................................AAGAAAAGAGAAAAAGG---A................................................................................................................................................................................................................................................................................................................................................................1811.001001000
.........................................................................AAAAA--AGGA--A----AGAGAAAG-AAC....................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAA-AAAGG-------------AAA--AGAC........................................1820.501010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-AAAGAAAGG---------AGGGAAA----A......1930.331010000
....................................................................................................AAAAGAAAAGAGAAAAAG.....................................................................................................................................................................................................................................................................................................................................................................1830.331001000
..............................................................................................GAAAG-AAAAGAAAAGAGAA.........................................................................................................................................................................................................................................................................................................................................................................1930.331001000
.........................................................................................................AAAAGAGAAAAAGG---AAGG.............................................................................................................................................................................................................................................................................................................................................................1880.252020000
.................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAA-AAAGG-------------AAA--AGAGCA......................................2050.201010000
...............................................................................................AAAG-AAAAGAAAAGAGAC.........................................................................................................................................................................................................................................................................................................................................................................18200.102020000
droBip1
AAAA--GCTTAAGGAGAAGGAAAAAGAAGAAA---AGCT------------------------CA--AG---GAGAAA--GAAA------GATT--AGA-ACGAATTAAAGAGAAG-----GAA-------CG--------GGA-----GGAAAG----------GATCAAGGAGAAGGAGAA---AGA---GGAAAGAATTAA---------AGAAGAG----------A----------------------------------AATTAAAA--G----AA------------AAGGAAAAGGAGGAA---AAG------CAAAAGGAGAAGGAGAAAG------AA---A--AGGCGGAAAAGCTCAA-------AGAATTGG-------AAAGG-----GAAAAGGAAGC------------------GAAGCTTAA---AGAGAAAGAACGCGAGGAAAG----AGAGGCTSizeHit CountTotal NormTotal
No Reads
dp5
AAAA--GAAAGGAA-AAAGAGAGACAAAAGAG---AGAC------------------------AAAAGA---GACTAA--AAAG--A---GAGA-AAAAAAGGGAAAAAGAGAAAA------AA---AAGAGAAAAAAGAAAGA-----AGAAA------------GAGAGAAAA---AAGAGAGAATA-------AAGA---G---------AGAAAAA----------TAAGTGAAAAAAGAAAGAAAAAAGAAAGAAAA------------------------------------AAAAAGAAAGA---AAAAAAAGG------------AAA------AA-------AAGGAAAAAGAGAGATAAA-------AGAGAGAC-----A-----------AAAGAGAGAAA------------------AAAGAGAGAATAAAGAG---------AGAAAAA----AATAGAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................GAAAA------------------------------------AAAAAGAAAGA---AAA................................................................................................................................................................1940.2510010000000
..........................................................................................................................................................................................................................................................AAAGAAAGAAAA------------------------------------AAAAAGAA.........................................................................................................................................................................2060.1710000100000
droPer2
AAAA--GAAAGGCT-TCGAAAAGAATAGGGAA---G-AG------------------------AG--CG---GAAGAG--GAGA--G---GAGA----GAGAGAGAGCGAGAGAGA------------AAGGAG---AAAGAGA-----GT---------------GAAGAGTGAG-----------AG-------AAAA---AGGAGGAGAGAGAAAGA----------GAGT-GAGAGAAA-----------------AAGGAGGAG-AGA--G----AA------------AGGAGAAAGAGAGTG---AAGAGT---------------GA----------------GAGAAAAAGGAGGAGAGAG-------AAAGGAGA-----------------AAG---AGAGT-------------GAGAGA---AAAAGGAGAAAGG---------AGAACGG----GAGTGAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................TAGGGAA---G-AG------------------------AG--CG---GAAGAG--G..........................................................................................................................................................................................................................................................................................................................................................................................................2113.003030000
...............................A---G-AG------------------------AG--CG---GAAGAG--GAGA--G---GAGA----GA.......................................................................................................................................................................................................................................................................................................................................................................................2512.002020000
....................AAGAATAGGGAA---G-AG------------------------AG--CG---GAAGAG--G..........................................................................................................................................................................................................................................................................................................................................................................................................2612.002020000
...................AAAGAATAGGGAA---G-AG------------------------AG--CG---GAAGAG--...........................................................................................................................................................................................................................................................................................................................................................................................................2612.002020000
.....................AGAATAGGGAA---G-AG------------------------AG--CG---GAAGAG--...........................................................................................................................................................................................................................................................................................................................................................................................................2412.002020000
...............................A---G-AG------------------------AG--CG---GAAGAG--GAGA--G---G................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
....................AAGAATAGGGAA---G-AG------------------------AG--CG---G..................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.............T-TCGAAAAGAATAGGGAA---G-AG------------------------AG--CG---GA.................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
..........................AGGGAA---G-AG------------------------AG--CG---GAAGAG--GAGA--G---G................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
...........GCT-TCGAAAAGAATAGGGAA---G-AG------------------------AG--C.......................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.....................................AG------------------------AG--CG---GAAGAG--GAGA--G---GAG..............................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
...................AAAGAATAGGGAA---G-AG------------------------AG--CG---GAAGAG--G..........................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
...................AAAGAATAGGGAA---G-AG------------------------AG--CG---GAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.......AAAGGCT-TCGAAAAGAATAGGGAA---A-......................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
............................................................................................................................................................................................................GGAGGAGAGAGAAAGA----------GAGT-GA..............................................................................................................................................................................................................................................2211.001010000
...............TCGAAAAGAATAGGGAA---G-AG------------------------AG--CG---GAA................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.............................GAA---G-AG------------------------AG--CG---GAAGAG--GAGA--G---GAG..............................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.....................AGAATAGGGAA---G-AG------------------------AG--CG---GAAGAG--G..........................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.........................TAGGGAA---G-AG------------------------AG--CG---GAAGAG--GAGA--G---.................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
................CGAAAAGAATAGGGAA---G-AG------------------------AG--C.......................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
...............TCGAAAAGAATAGGGAA---G-AG------------------------AG--C.......................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
...................AAAGAATAGGGAA---G-AG------------------------AG--CG---GAAG...............................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.........AGGCT-TCGAAAAGAATAGGGAA---G-AG------------------------A...........................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.........................TAGGGAA---G-AG------------------------AG--CG---GAAGAG--GAGA--.....................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGAAAGG---------AGAACGG----G......1911.001010000
...............TCGAAAAGAATAGGGAA---G-AG------------------------AG--CG---G..................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
............CT-TCGAAAAGAATAGGGAA---G-AG------------------------AG--........................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.......AAAGGCT-TCGAAAAGAATAGGGAA---G-AG------------------------............................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.........................TAGGGAA---G-AG------------------------AG--CG---GAAGAG--GA.........................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
...............................................................AG--CG---GAAGAG--GAGA--G---GAGA----GAG......................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.............T-TCGAAAAGAATAGGGAA---G-AG------------------------AG--........................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
...................AAAGAATAGGGAA---G-AG------------------------AG--CG---GAA................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
............................................................................................................................................GAGA-----GT---------------GAAGAGTGAG-----------AG-------AAAA---AGGA............................................................................................................................................................................................................................................................................2630.672020000
..............................................................................................................................................................................................................................................................................................................GAGAGTG---AAGAGT---------------GA----------------GAGAAAAAGGA.................................................................................................................2630.672020000
.............................................................................................................................................................................................................................................................................................................................T---------------GA----------------GAGAAAAAGGAGGAGAGAG-------AA................................................................................................2450.603030000
............................................................................................................................................................................TGAG-----------AG-------AAAA---AGGAGGAGAGAGAA..................................................................................................................................................................................................................................................................2450.603030000
.........................................................................................................................................................................................................................................T-GAGAGAAA-----------------AAGGAGGAG-AGA--G----AA------------.....................................................................................................................................................................................2450.603030000
............................................................................................................................................................................TGAG-----------AG-------AAAA---AGGAGGAGAGAGAAA.................................................................................................................................................................................................................................................................2550.402020000
.............................................................................................................................................................................................................................................................................................................................T---------------GA----------------GAGAAAAAGGAGGAGAGAG-------AAA...............................................................................................2550.402020000
.........................................................................................................................................................................................................................................T-GAGAGAAA-----------------AAGGAGGAG-AGA--G----AA------------A....................................................................................................................................................................................2550.402020000
.........................................................................AAGAG--GAGA--G---GAGA----GAGA.....................................................................................................................................................................................................................................................................................................................................................................................1830.331010000
.............................................................................................................AGAGAGA------------AAGGAG---AAAGAGA-----GT---------------G....................................................................................................................................................................................................................................................................................................................2340.251100000
........................................................................................................................................................................................................................................................................................AA------------AGGAGAAAGAGAGTG---AAGAGT---------------..............................................................................................................................................2340.251010000
...................................................................................................................A------------AAGGAG---AAAGAGA-----GT---------------GAAGAGT..............................................................................................................................................................................................................................................................................................................2340.251010000
............................................................................................................................................................................................................................................................................................................................................................................AGAGAG-------AAAGGAGA-----------------AAG---AGAGT-------------G................................................2340.251100000
...........................................................................................................................................................................................................................................................................AG-AGA--G----AA------------AGGAGAAAGAGAGTG---...................................................................................................................................................................2340.251100000
........................................................................................................................................................................AGAGTGAG-----------AG-------AAAA---AGGAGGAGAG......................................................................................................................................................................................................................................................................2450.201010000
.........................................................................................................................................................................................................................................................................................................................AGAGT---------------GA----------------GAGAAAAAGGAGGAGAG...........................................................................................................2450.201010000
......................................................................................................................................................................GAAGAGTGAG-----------AG-------AAAA---AGGAGG..........................................................................................................................................................................................................................................................................2250.201010000
...........................................................................................................................................................................................................................A----------GAGT-GAGAGAAA-----------------AAGGAGGAG-AG...........................................................................................................................................................................................................2450.201010000
...................................................................................................................................................................................................................................................................................................................TG---AAGAGT---------------GA----------------GAGAAAAAGGAGGA..............................................................................................................2450.201010000
......................................................................................................................................................................GAAGAGTGAG-----------AG-------AAAA---AGGAGGAG........................................................................................................................................................................................................................................................................2450.201010000
...................................................................................................................................................................................................................................................................................................................TG---AAGAGT---------------GA----------------GAGAAAAAGGAGGAG.............................................................................................................2550.201010000
............................................................................................................................................................................TGAG-----------AG-------AAAA---AGGAGGAGAGAGAAAA................................................................................................................................................................................................................................................................2650.201000001
.............................................................................................................................................................................................................................................................................................................................T---------------GA----------------GAGAAAAAGGAGGAGAGAG-------AAAA..............................................................................................2650.201000001
.........................................................................................................................................................................................................................................T-GAGAGAAA-----------------AAGGAGGAG-AGA--G----...................................................................................................................................................................................................2250.201010000
....................................................................................................................................................................................................................................................................................................................G---AAGAGT---------------GA----------------GAGAAAAAGGAGG...............................................................................................................2250.201010000
....................................................................................................................................................................................................................................................................................................................G---AAGAGT---------------GA----------------GAGAAAAAGG..................................................................................................................1950.201010000
......................................................................................................................................................T---------------GAAGAGTGAG-----------AG-------AAAA---AGGAGGA.........................................................................................................................................................................................................................................................................2450.201010000
.............................................................................................................................................................................................................................................................................................................................T---------------GA----------------GAGAAAAAGGAGGAGAGAG-------..................................................................................................2250.201010000
....................................................................................................................................................................................................................................................................................................................G---AAGAGT---------------GA----------------GAGAAAAAGGAGGAG.............................................................................................................2450.201010000
......................................................................................................................................................................GAAGAGTGAG-----------AG-------AAAA---AGG.............................................................................................................................................................................................................................................................................1950.201010000
............................................................................................................................................................................TGAG-----------AG-------AAAA---AGGAGGAGAGAG....................................................................................................................................................................................................................................................................2250.201010000
...................................................................................................................................................................................................................................................................................................................TG---AAGAGT---------------GA----------------GAGAAAAAGGAGG...............................................................................................................2350.201010000
..................................................................................................................................................................................................................................................................................................................................................................AAAAAGGAGGAGAGAG-------AAAG..............................................................................................2050.201010000
....................................................................................................................................................................................................AAAA---AGGAGGAGAGAGAAAG................................................................................................................................................................................................................................................................2050.201010000
......................................................................................................................................................T---------------GAAGAGTGAG-----------AG-------AAAA---AGGAGGAG........................................................................................................................................................................................................................................................................2550.201010000
................................................................................................................................................................................................................................................AAA-----------------AAGGAGGAG-AGA--G----AA------------AG...................................................................................................................................................................................2050.201010000
.........................................................................................................................................................................................................................................T-GAGAGAAA-----------------AAGGAGGAG-AGA--G----AA------------AA...................................................................................................................................................................................2650.201000001
......................................................................................................................................................T---------------GAAGAGTGAG-----------AG-------AAAA---AGGAGG..........................................................................................................................................................................................................................................................................2350.201010000
.................................................................................................................................AGGAG---AAAGAGA-----GT---------------GAAGAGTGAG-----------G...............................................................................................................................................................................................................................................................................................25160.132200000
......................................................................................................................................................................................................................................................................................................AGGAGAAAGAGAGTG---AAGAGT---------------GA----------------GG..........................................................................................................................25160.132200000
............................................................................................GA----GAGAGAGAGCGAGAGAGA------------...........................................................................................................................................................................................................................................................................................................................................................20200.051001000
droWil2
ATCG--AAAGAAAG-GAAAATGAAAGGAGAGAACAGGAGCGAAAAGAAAGGAAAGAACAGGAGCG--AAAA-GAAAGG--AA-----------------------AGAACAGGA-----GC-GAATAGAAAGGA---AAGAACA-----GGAG------------CGTCAAAGAGAAGAGGAA---AGA-------AAAA---T---------TCGCGAA----------AA----------A-----------------CAAGAAATCGAAA--G----AA------------AGGAAAATGAAAGGA---AAGAAC---------------AGGAGCGA---------AAA-GAAAGGAAAGAACAGGAGCGAATA-GAAAGG-----------------AAA---GAACA--------------GGAGCGAAAAGAAAGGAAAGA---------ACAGGAG----CGTCAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAAGA---------ACAGGAG----CGT....1870.14101000
..................................................................................................................................AGGA---AAGAACA-----GGAG------------CGT...................................................................................................................................................................................................................................................................................................................1870.14101000
droVir3
AGAAGAGAAGAGAA-GAGAAGA---GAAGAGA---AGAG------------------------AA--GA---GAAGAGAAGAGAAGAGAAGAGA-AG---AGAAGAGAAGAGAAGAGAAG----------AGAA---GAGAAGAGAAGAGAAGA---------GA-AGAGAAGAGAAGAGAAG-------------AGAA---G---------AGAAGAGAAGAG------------------------------------AAGAGAAGAGAAGAGAAG-----A-----------GAAGAGAAGAGAA---GAGAAG---------------AGAAGAGA---------AGAGAAGAGAAGAGAAGAGA-----AGAGAAGAGA-----------------AGA---GAAGA-------------GAAGAG---AAGAGAAGAGAAG---------AGAAGAG----AAGAGAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................G------------------------------------AAGAGAAGAGAAGAGAAG-----A-----------GA.................................................................................................................................................................................22200.102000000002000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................GAAG-----A-----------GAAGAGAAGAGAA---GAGA...............................................................................................................................................................22200.102000000002000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................GAAGAGAAGAG------------------------------------AAGAGAAGAGA...........................................................................................................................................................................................................22200.102000000002000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................GAAGAGAAGAGAA---GAGAAG---------------AGA...........................................................................................................................................22200.102000000002000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................GAAGAGAAG-----A-----------GAAGAGAAGAGA.......................................................................................................................................................................22200.102000000002000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................GAAGAGAA---GAGAAG---------------AGAAGAGA---------.............................................................................................................................22200.102000000002000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................GAA---G---------AGAAGAGAAGAG------------------------------------AAGAGA................................................................................................................................................................................................................22200.102000000002000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................GAAGAG------------------------------------AAGAGAAGAGAAGAGA......................................................................................................................................................................................................22200.102000000002000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................GAA---GAGAAG---------------AGAAGAGA---------AGAGA........................................................................................................................22200.102000000002000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................GAAGAGAAGAGAAG-----A-----------GAAGAGA............................................................................................................................................................................22200.102000000002000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................GAAGAGAAGAGAAG-------------AGAA---G---------AGAA..................................................................................................................................................................................................................................................................23200.051000001000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................AGAAGAGAAG-------------AGAA---G---------AGAAGA................................................................................................................................................................................................................................................................21200.051000001000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................AGAAGAGAAGAGAAG-------------AGAA---G---------A.....................................................................................................................................................................................................................................................................21200.051000001000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................GA-AGAGAAGAGAAGAGAAG-------------AGAA---................................................................................................................................................................................................................................................................................23200.051000001000000000000000000000000000000000000000000000000000000000
..................................................................................................................................AGAA---GAGAAGAGAAGAGAAGA---------........................................................................................................................................................................................................................................................................................................................21200.051000001000000000000000000000000000000000000000000000000000000000
....................................................................................................................GAAG----------AGAA---GAGAAGAGAAGAGAA...................................................................................................................................................................................................................................................................................................................................23200.051000001000000000000000000000000000000000000000000000000000000000
................................................................................................................................................GAAGAGAAGA---------GA-AGAGAAGAGAA..........................................................................................................................................................................................................................................................................................................23200.051000001000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................AGAAGA---------GA-AGAGAAGAGAAGA........................................................................................................................................................................................................................................................................................................21200.051000001000000000000000000000000000000000000000000000000000000000
...................................................................................................................................GAA---GAGAAGAGAAGAGAAGA---------GA-A....................................................................................................................................................................................................................................................................................................................23200.051000001000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................AGAAGAGAAGAGAAGA---------GA-AGA..................................................................................................................................................................................................................................................................................................................21200.051000001000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................GAAGAGAAGAGAAGA---------GA-AGAGAA...............................................................................................................................................................................................................................................................................................................23200.051000001000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................AGAAGAGAAGA---------GA-AGAGAAGA.............................................................................................................................................................................................................................................................................................................21200.051000001000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................GAAGA---------GA-AGAGAAGAGAAGAGAA.....................................................................................................................................................................................................................................................................................................23200.051000001000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................A---------GA-AGAGAAGAGAAGAGAAG-------------A......................................................................................................................................................................................................................................................................................21200.051000001000000000000000000000000000000000000000000000000000000000
droMoj3
AAGA--GAAGAGAA-GAGAAGAGAAGAGAAGA---GAAG------------------------AG--A----AGAGAA--GAGAAGAGAAGAGA-AG---AGAAGAGAAGAGAAGAGAAG----------AGAA---GAGAAGAGAAGAGAAGA---------GA-AGAGAAGAGAAGAGAAG-------------AGAA---G---------AGAAGAGAAGAG------------------------------------AAGAGAAGAGAAGAGAAG-----A-----------GAAGAGAAGAGAA---GAGAAG---------------AGAAGAGA---------AGAGAAGAGAAGAGAAGAGA-----AGAGAAGAGA-----------------AGA---GAAGA-------------GAAGAG---AAGAGAAGAGAAG---------AGAAGAG----AAGAGAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
AAGA--GAAGAGAA-GAGAAGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.408000008
....................................................................................................................................................................................................................................................................................................................................................................................................................A---GAAGA-------------GAAGAG---AAGAGAAGA...............................21200.102000002
..........................................................................................................................................................................................................................................................................................................................................................................AGAAGAGA-----AGAGAAGAGA-----------------AGA---...................................................................21200.102000002
.........................................................................................................................................................................................................................................................................................................................................................................................AGAAGAGA-----------------AGA---GAAGA-------------GAAGA............................................21200.102000002
..................................................................................................................................................................................................................................................................................................................................................AGA---------AGAGAAGAGAAGAGAAGA...........................................................................................................21200.102000002
.........................................................................................................................................................................................................................................................................................................................AGAAG---------------AGAAGAGA---------AGAGAAGA.....................................................................................................................21200.102000002
............................................................................................................................................................................................................................................................................................................AGAAGAGAA---GAGAAG---------------AGAAGA........................................................................................................................................21200.102000002
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AG---AAGAGAAGAGAAG---------AGAAGA............21200.102000002
..............................................................................................................................................................................................................................................................................................................................................................................................AGA-----------------AGA---GAAGA-------------GAAGAG---AAGA....................................21200.102000002
............................................................................................................................................................................................................................................................................................................................................................................................................................A-------------GAAGAG---AAGAGAAGAGAAG---------A.................21200.102000002
.....................................................................................................................................................................................................................................................................................................................................................................AGAAGAGAAGAGA-----AGAGAAGA............................................................................................21200.102000002
................................................................................................................................................................................................................................................................................................................................................................AGAAGAGAAGAGAAGAGA-----AGA.................................................................................................21200.102000002
.................................................................................................................................................................................................................................................................................................................AGAA---GAGAAG---------------AGAAGAGA---------AGA..........................................................................................................................21200.102000002
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAGAAG---------AGAAGAG----AAGA...21200.102000002
...............................................................................................................................................................................................................................................................................................................................................................................AGA-----AGAGAAGAGA-----------------AGA---GAAGA-------------.................................................21200.102000002
.............................................................................................................................................................................................................................................................................................................................................AGAAGAGA---------AGAGAAGAGAAGA................................................................................................................21200.102000002
.................................................................................................................................................................................GAGAAG-------------AGAA---G---------AGAAGAGA..............................................................................................................................................................................................................................................................19200.051000001
...............................................................................................................................................................................................................................................................................................................................................................GAGAAGAGAAGAGAAGAGA-----....................................................................................................19200.051000001
..............................................................................................................AGAAGAGAAG----------AGAA---GAGAAGA...........................................................................................................................................................................................................................................................................................................................................21200.051001000
.........................................................................................................................................................................................................................................................................................................................................................................GAGAAGAGA-----AGAGAAGAGA-----------------.........................................................................19200.051000001
..........AGAA-GAGAAGAGAAGAGAAGA---........................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
................................................................................................................AAGAGAAG----------AGAA---GAGAAGAGA.........................................................................................................................................................................................................................................................................................................................................21200.051000100
.............................................................................................................................................................................................................................................................................................................................G---------------AGAAGAGA---------AGAGAAGAGA...................................................................................................................19200.051000001
.....................AGAAGAGAAGA---GAAG------------------------AG--A----AGA................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
.................................................................................AGAAGAGAAGAGA-AG---AGAAGA.................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
...................................................................................AAGAGAAGAGA-AG---AGAAGAGA...............................................................................................................................................................................................................................................................................................................................................................................21200.051000100
................................................................................................................................................................................................................................................................................................................GAGAA---GAGAAG---------------AGAAGAGA---------.............................................................................................................................19200.051000001
....................................................................................................AGAAGAGAAGAGAAGAGAAG----------A........................................................................................................................................................................................................................................................................................................................................................21200.051001000
........................................................................................................................................................................................................................................................................................................................................................................................GAGAAGAGA-----------------AGA---GAAGA-------------GA...............................................19200.051000001
...........................................................................................................................................................................................................G---------AGAAGAGAAGAG------------------------------------AAGAGA................................................................................................................................................................................................................19200.051000001
.................................................................................................................................................................................................................................................................................GAGAAG-----A-----------GAAGAGAAGAGA.......................................................................................................................................................................19200.051000001
......................................................................................AGAAGAGA-AG---AGAAGAGAAGA............................................................................................................................................................................................................................................................................................................................................................................21200.051001000
......................................................................................................AAGAGAAGAGAAGAGAAG----------AGA......................................................................................................................................................................................................................................................................................................................................................21200.051000100
..............................................................................................................................................................................................................................GAG------------------------------------AAGAGAAGAGAAGAGA......................................................................................................................................................................................................19200.051000001
.......................................................................................................................................................................................................................AAGAGAAGAG------------------------------------AAGAGAAGAGA...........................................................................................................................................................................................................21200.051000100
.......................................................................................................................................................................................................................................................................GAGAAGAGAAGAGAAG-----A-----------GA.................................................................................................................................................................................19200.051000001
......................................................................................................................................................................................................................................................................................G-----A-----------GAAGAGAAGAGAA---GAGA...............................................................................................................................................................19200.051000001
............................................................................................................................................................................................................................................................................GAGAAGAGAAG-----A-----------GAAGAGA............................................................................................................................................................................19200.051000001
....................................................................................................................................................................A-AGAGAAGAGAAGAGAAG-------------AGA....................................................................................................................................................................................................................................................................................21200.051000100
AAGA--GAAGAGAA-GAGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000001
..................AAGAGAAGAGAAGA---GAAG------------------------AG--A----AGAGA..............................................................................................................................................................................................................................................................................................................................................................................................................26200.051000001
............AA-GAGAAGAGAAGAGAAGA---GAAG------------------------AG--A----...................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000001
.................................................................................................................................................AAGAGAAGA---------GA-AGAGAAGAGA...........................................................................................................................................................................................................................................................................................................21200.051000100
.............................................................................................A-AG---AGAAGAGAAGAGAAGAGA.....................................................................................................................................................................................................................................................................................................................................................................21200.051000100
...........................................................................................AGA-AG---AGAAGAGAAGAGAAGA.......................................................................................................................................................................................................................................................................................................................................................................21200.051001000
..............................................................................................................................................................................................................................................................................................................................................................................GAGA-----AGAGAAGAGA-----------------AGA---GA.................................................................19200.051000001
.........................................................................................................................................................................................................................GAGAAGAG------------------------------------AAGAGAAGAGA...........................................................................................................................................................................................................19200.051000001
.............................................................................................................................................................................................................................................................................................................................................................................................GAGA-----------------AGA---GAAGA-------------GAAGAG---A.......................................19200.051000001
....................................................................................................................................AA---GAGAAGAGAAGAGAAGA---------GA-.....................................................................................................................................................................................................................................................................................................................21200.051000100
.......AAGAGAA-GAGAAGAGAAGAGAAGA---GA......................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000001
.....................................................................................................................AAG----------AGAA---GAGAAGAGAAGAGA....................................................................................................................................................................................................................................................................................................................................21200.051000100
......................................................................................................................................................................................G-------------AGAA---G---------AGAAGAGAAGAG------------------------------------A.....................................................................................................................................................................................................................19200.051000001
...........................................................................................................AAGAGAAGAGAAG----------AGAA---GAGA..............................................................................................................................................................................................................................................................................................................................................21200.051000100
............................................................................................................................................AAGAGAAGAGAAGA---------GA-AGAGA................................................................................................................................................................................................................................................................................................................21200.051000100
....................................................................................................................................................................................................................................................................................................................................................................GAGAAGAGAAGAGA-----AGAGA...............................................................................................19200.051000001
........................................................................................................................................................................................................................................................................................................................GAGAAG---------------AGAAGAGA---------AGAGA........................................................................................................................19200.051000001
............................................................................AA--GAGAAGAGAAGAGA-AG---AGA....................................................................................................................................................................................................................................................................................................................................................................................21200.051000100
.........................................................................................................AGAAGAGAAGAGAAG----------AGAA---GA................................................................................................................................................................................................................................................................................................................................................21200.051001000
AAGA--GAAGAGAA-GAGAAGAGAAGAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000001
...............................A---GAAG------------------------AG--A----AGAGAA--GAGAAGA....................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
.................................................................................................................................................................................................................................................................................................................................................GAGA---------AGAGAAGAGAAGAGA..............................................................................................................19200.051000001
...............................................................................................................................................................................AAGAGAAG-------------AGAA---G---------AGAAGAGA..............................................................................................................................................................................................................................................................21200.051000100
..........................................................................................................................................................................AAGAGAAGAGAAG-------------AGAA---G---------AGA...................................................................................................................................................................................................................................................................21200.051000100
...............................................................AG--A----AGAGAA--GAGAAGAGAAGA...............................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
........................................................................................AAGAGA-AG---AGAAGAGAAGAGA..........................................................................................................................................................................................................................................................................................................................................................................21200.051000100
....................................................................................................................................................................................AAG-------------AGAA---G---------AGAAGAGAAGAG------------------------------------A.....................................................................................................................................................................................................................21200.051000100
..........................AGAAGA---GAAG------------------------AG--A----AGAGAA--GA.........................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
..........................................................................AGAA--GAGAAGAGAAGAGA-AG---A......................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
......................................................................................................................................................................................................AA---G---------AGAAGAGAAGAG------------------------------------AAGAGA................................................................................................................................................................................................................21200.051000100
......................................................................................................................................................AAGA---------GA-AGAGAAGAGAAGAGA......................................................................................................................................................................................................................................................................................................21200.051000100
...........................................................................................................................................................................................................................................................................................................GAGAAGAGAA---GAGAAG---------------AGA...........................................................................................................................................19200.051000001
................AGAAGAGAAGAGAAGA---GAAG------------------------A...........................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
droGri2
AGAA--GAAAAGCT-GAAACAAGAAGAAGAAA---AGTT------------------------AA--AG---GAAGAG--GAAA--C---GATA-CGAGAAGAAAAAAAGAAG------------GAAGAAGAA---AAGAAAA-----AACAA------------GACGAAAATAAGAAGAA---GGA-------AGAA---G---------CCAAGAA----------AAAG-GAAGAAAA-----------------GAAAATGGAAGAA--G----------------TA------------------AAGATC---------------CA------GAAGGATGAAGCAAAGAAGAATGAAGAAG-------AAAAGAAA-----------------CAAGAAGAAAA------------------GAAGAAGGAAGAAGCAA---------AGAAGAA----GGAAGAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:27 AM