ID:

dsi_20735

 Coordinate:

3r:2380929-2381078 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.9 -6.6 -6.3

Flybase annnotation

CDS [3r_2381079_2381256_+]; exon [3r_2381079_2381256_+]; intron [3r_2380426_2381078_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTTAAGCTAGTATTTCATTGTTTTAAATAATTGGTTTATATAGTCACGGGGCAAGATTCCTTTTAATTGTATTCTGTATGATTTCTTGTTGGTTTGAATAACATATAATCTGAAATGTTAATTAGAGTCCTGGGTATTTTAAAAAGTGGGCCGCTTGCGAGAGTACATACTAAAATCAAGTCAATCAATCTTTTCTACAGAGAGGATGGATCCGTCAAGTTCCTGACCAAGGGCGACAATAACAACGTGG
*******************************************************************...((((((....(((((((((..(((.....)))..))))...)))))......))))))......******************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M024
male body		 M025
embryo
 O001
Testis
 O002
Head
 GSM343915
embryo
..............................................................................................................................................................................................................TGGATCCGTCAAGTTCCTGACCAAGGGC................ 28 0 1 14.00 14 12 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................TGTATTCTGTATGATTTCTTGTTGGTT............................................................................................................................................................ 27 0 1 10.00 10 5 5 0 0 0 0 0 0 0 0 0 0 0
..................................................................TTGTATTCTGTATGATTTCTTGTTGGTT............................................................................................................................................................ 28 0 1 7.00 7 6 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................TGTATTCTGTATGATTTCTTGTTGGT............................................................................................................................................................. 26 0 1 7.00 7 3 4 0 0 0 0 0 0 0 0 0 0 0
.........................................................TCCTTTTAATTGTATTCTGTATGATT....................................................................................................................................................................... 26 0 1 5.00 5 2 3 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TTCTACAGAGAGGATGGATCCGTCAAG............................... 27 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TATTCTGTATGATTTCTTGTTGGTT............................................................................................................................................................ 25 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0 0 0
....................................TATATAGTCACGGGGCAAGATTCCTTT........................................................................................................................................................................................... 27 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TCTACAGAGAGGATGGATCCGTCAAG............................... 26 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TCTGAAATGTTAATTAGAGTCCTGGG.................................................................................................................... 26 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TCAATCAATCTTTTCTACAGAGAGGA............................................ 26 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0 0
..............TCATTGTTTTAAATAATTGGTTTATA.................................................................................................................................................................................................................. 26 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TCAATCTTTTCTACAGAGAGGATGGA........................................ 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................ATCAAGTCAATCAATCTTTTCTACAGA................................................. 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................TATAGTCACGGGGCAAGATTCCTTT........................................................................................................................................................................................... 25 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................TTCTGTATGATTTCTTGTTGGTTTGAATA...................................................................................................................................................... 29 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TACAGAGAGGATGGATCCGTCAAGT.............................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TGGTTTGAATAACATATAATCTGAAA....................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TGATTTCTTGTTGGTTTGAATAACA................................................................................................................................................... 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GTCAATCAATCTTTTCTACAGAGAGGA............................................ 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................TATTTTAAAAAGTGGGCCGCTTGCGAGA........................................................................................ 28 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................TTCCTTTTAATTGTATTCTGTATGATT....................................................................................................................................................................... 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................TCTGTATGATTTCTTGTTGGT............................................................................................................................................................. 21 0 1 2.00 2 0 0 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................TTTCTACAGAGAGGATGGATCCGTCAAG............................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TGATTTCTTGTTGGTTTGAATAACATA................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TCTACAGAGAGGATGGATCCGTCAAGT.............................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TTCTGTATGATTTCTTGTTGG.............................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................GTATGATTTCTTGTTGGTTTG.......................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................GCGAGAGTACATACTAAAATCAAG...................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................TTCTGTATGATTTCTTGTTGGTTTGAA........................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTTTCTACAGAGAGGATG.......................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................GATCCGTCAAGTTCCTGACCAAGGGC................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................TGGTTTATATAGTCACGGGGCAAGA.................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................AGTCCTGAGTATTGTAAGAAG........................................................................................................ 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TGGTTTGAATAACATATAATCTGAAATGT.................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TGAAATGTTAATTAGAGTCCTGGGTAT................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TGTATGATTTCTTGTTGGTT............................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TAATCTGAAATGTTAATTAGAGTCCTGGG.................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TCAAGTCAATCAATCTTTTCTACAGA................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TACAGAGAGGATGGATC...................................... 17 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CTGACCAAGGGCGACAATAACAACGT.. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
GTTAAGCTAGTATTTCATTGTTTTAAAT.............................................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................TTGGTTTATATAGTCACGGGGCAAGA.................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................AATAATTGGTTTATATAGTCA............................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................TAATTGGTTTATATAGTCACGGGGCAA.................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ACAGAGAGGATGGATCCGTCAAGT.............................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................TCAAGTCAATCAATCTTTTCTACAGAGA............................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TGTTAATTAGAGTCCTGGGTATTTTA............................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............CATTGTTTTAAATAATTGGTTTATA.................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................ATCAATCTTTTCTACAGAGAGGATGGA........................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................AATGTTAATTAGAGTCCTGGGTATT................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................TTCCTTTTAATTGTATTCTGTATGAT........................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................CTGTATGATTTCTTGTTGGTT............................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................CAATCAATCTTTTCTACAGAGAGGA............................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................TGTTGGTTTGAATAACATATAATCTG.......................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................GTTGGTTTGAATAACATATAATCTGAA........................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TCTGAAATGTTAATTAGAGTCCTGGGTA.................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................TTGGTTTATATAGTCACGGGGCAAGATT................................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................TTAAATAATTGGTTTATATAGTCACGGG........................................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TGTCAATCAATCTTTTCTACAGAGAGGA............................................ 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TGTATGATTTCTTGTTGGTTTGAATAACA................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TTAATTAGAGTCCTGGGTATTTTAAAA.......................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TGAAATGTTAATTAGAGTCCTGGGAATTT............................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TGGATCCGTCAAGTTCCTGACCAAGG.................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ATGGATCCGTCAAGTTCCTGACCAAGGGCGA.............. 31 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TGGATCCGTCAAGTTCCTGACCAAGGGCGA.............. 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AAAGAGGATGGATCCGTCAAGTTCCT.......................... 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................TGTTGGTTTGAATAACATATAATCTGA......................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TCAATCTTTTCTACAGAGAGGA............................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................TATTTTAAAAAGTGGGCCGCTTGCGA.......................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TGTATGATTTCTTGTTGGTTT........................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TGAAATGTTAATTAGAGTCCTGGGTA.................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TTTTAAAAAGTGGGCCGCTTGCGAGA........................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TAAAAAGTGGGCCGCTTGCGAG......................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1
...........................................TCACGGGGCAAGATTCCTT............................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................TCTTTTCTACAGAGAGGATGGATCCGTC.................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AATTACAGTCCTGGGTATTTTAAAAA......................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................AGAGGATGGATCCGTCAAGT.............................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................TGGTTTATATAGTCACGGGGCAAGATT................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TGACCAAGGGCGACAATAACAACGTGG 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AGGATGGATCCGTCAAGTTCCT.......................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................GAGAGTACATACTAAAATCAAGTCAA.................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................ATTGTAAGAAGTGGGCCGCCT.............................................................................................. 21 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................GTATGATTCCTTGTTGG.............................................................................................................................................................. 17 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................GCATCTCAAATGTTAATTAGA............................................................................................................................ 21 3 12 0.25 3 0 3 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TCCTAGGTACTTTAAAAA......................................................................................................... 18 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TTCTAGAGAGGGGATG.......................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AAAATCACGTCAATCAAA............................................................. 18 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................GTGGACCGCTTGCTAG......................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................TCTGAAATGTTGATTAAA............................................................................................................................ 18 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

CAATTCGATCATAAAGTAACAAAATTTATTAACCAAATATATCAGTGCCCCGTTCTAAGGAAAATTAACATAAGACATACTAAAGAACAACCAAACTTATTGTATATTAGACTTTACAATTAATCTCAGGACCCATAAAATTTTTCACCCGGCGAACGCTCTCATGTATGATTTTAGTTCAGTTAGTTAGAAAAGATGTCTCTCCTACCTAGGCAGTTCAAGGACTGGTTCCCGCTGTTATTGTTGCACC
********************************************************************************************************************...((((((....(((((((((..(((.....)))..))))...)))))......))))))......******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 O002
Head
 SRR902009
testis
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 GSM343915
embryo
 M023
head
............ACAGTAACATAATTTATTA........................................................................................................................................................................................................................... 19 2 10 184.50 1845 1680 0 0 144 0 0 0 18 1 0 0 2 0 0
..........AAACAGTAACATAATTTATTA........................................................................................................................................................................................................................... 21 3 20 127.75 2555 2160 1 1 336 0 0 1 49 0 0 1 5 1 0
.............CAGTAACATAATTTATTA........................................................................................................................................................................................................................... 18 2 19 35.63 677 588 0 0 0 0 0 0 7 1 53 0 22 0 6
............ACAGTAACATAATTTATT............................................................................................................................................................................................................................ 18 2 20 14.70 294 288 0 0 0 0 0 0 5 0 0 1 0 0 0
.................................................................................................................TTACAATTAATCTCAGGACTCATAACAT............................................................................................................. 28 2 1 8.00 8 0 5 3 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CACCCGGCGGACGCTCTCATGTATGATT............................................................................. 28 1 1 7.00 7 0 7 0 0 0 0 0 0 0 0 0 0 0 0
........................................................AAGGAAAATTAACATAAGACATACT......................................................................................................................................................................... 25 0 1 6.00 6 0 3 2 0 0 0 0 0 1 0 0 0 0 0
.....................................................TCTAAGGAAAATTAACATAAGACAT............................................................................................................................................................................ 25 0 1 5.00 5 0 1 0 0 0 0 4 0 0 0 0 0 0 0
.............................................................................................................................................................................TTAGTTCAGTTAGTTAGAAAAGATGT................................................... 26 0 1 4.00 4 0 0 1 0 0 2 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AGGCAGTTCAAGGACTGGTTCCCGCT.............. 26 0 1 4.00 4 0 0 0 0 2 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AGGCAGTTCAAGGACTGGTTCCCGC............... 25 0 1 4.00 4 0 2 0 0 1 0 1 0 0 0 0 0 0 0
...................................................................................................................ACAATTAATCTCAGGACTCATAACAT............................................................................................................. 26 2 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................CTCATGTATGATTTTAGT........................................................................ 18 0 1 3.00 3 0 0 2 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................TTACAATTAATCTCAGGACTCATAAC............................................................................................................... 26 2 1 3.00 3 0 2 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CTCCTACCTAGGCAGTTCAAGGACTGGT..................... 28 0 1 3.00 3 0 0 0 0 2 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AGGCAGTTCAAGGACTGGTTC................... 21 0 1 3.00 3 0 0 2 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................CACCCGGCGGACGCTCTCATGTATGAT.............................................................................. 27 1 1 3.00 3 0 0 0 0 0 3 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TAGTTAGAAAAGATGTCTCTCCTACCT........................................ 27 0 1 3.00 3 0 1 0 0 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................CGGACGCTCTCATGTATGATTTTAGTT....................................................................... 27 1 1 3.00 3 0 2 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CGGACGCTCTCATGTATGATTTTAGT........................................................................ 26 1 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................TCATGTATGATTTTAGTTCAGTTAGTTA............................................................. 28 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................ACCCGGCGGACGCTCTCATGTATGAT.............................................................................. 26 1 1 2.00 2 0 0 0 0 0 1 0 0 0 0 1 0 0 0
.....................................................................................................................................................CGGCGGACGCTCTCATGTATGATTTTAGT........................................................................ 29 1 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................ATTAATCTCAGGACTCATAACATTCT.......................................................................................................... 26 3 1 2.00 2 0 1 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................CTACCTAGGCAGTTCAAGGACTGGTT.................... 26 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0
.................................................................................................................................................CACCCGGCGGACGCTCTCATGTATGATTT............................................................................ 29 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TCAGTTAGTTAGAAAAGATGTCTCT............................................... 25 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CTACCTAGGCAGTTCAAGGACTGGT..................... 25 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................CTCCTACCTAGGCAGTTCAAGGACT........................ 25 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CAGTTAGTTAGAAAAGATGTCTCTCCT............................................ 27 0 1 2.00 2 0 1 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................CAATTAATCTCAGGACTCATAACATT............................................................................................................ 26 2 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................CTTTACAATTAATCTCAGGACTCAT.................................................................................................................. 25 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TAGTTCAGTTAGTTAGAAAAGATGTCTCTC.............................................. 30 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AAGTTCAGTTAGTTAGAAAAGATGTCT................................................. 27 1 1 2.00 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0
........................................................AAGGAAAATTAACATAAGACATACTA........................................................................................................................................................................ 26 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CAATTAATCTCAGGACTCATAACATTCT.......................................................................................................... 28 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ACCTAGGCAGTTCAAGGACTGAT..................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................AAGGAAAATTAACATAAGACATACA......................................................................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AGGCAGTTCAAGGACTGGTTCC.................. 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................TTAATCTCAGGACTCATAACATTCTT......................................................................................................... 26 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AGGCAGTTCAAGGACTGGTTCCCGCTGT............ 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................CGCTCTCATGTATGATTTTAGTTCAGT................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CAAGGACTGGTTCCCGCTGTTATTGTT..... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AGACTTTACAATTAATCTCAGGACTC.................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ACCTAGGCAGTTCAAGGAC......................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................CTCTCATGTATGATTTTAGTT....................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TCTCCTACCTAGGCAGTTCAAGGAC......................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................TTTACAATTAATCTCAGGACCCAT.................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AGGCAGTTCAAGGACTGGTTCCCGCTGTTAT......... 31 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TAGTTCAGTTAGTTAGAAAAGATGT................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................AGTTCAGTTAGTTAGAAAAGATGTCT................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CTAGGCAGTTCAAGGACTGGTTCCC................. 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................AAATTTACAATTAATCTCAGGACTCAT.................................................................................................................. 27 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................TTATTAACCAAATATATCAGTGCCCCGT..................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................GGACGCTCTCATGTATGATTTTAGTT....................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................CTCATGTATGATTTTAGTTCAGTTAGTTAG............................................................ 30 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TCAAGGACTGGTTCCC................. 16 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................TCATGTATGATTTTAGTTCAGTTAGTT.............................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CAGTTAGTTAGAAAAGATGTCTCTCCTAC.......................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TCAAGGACTGGTTCCCGCTGTTAT......... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AAAGATGTCTCTCCTACCTAGGCAGTT................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AGGCAGTTCAAGGACTGGTTCCCGCTG............. 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................CGCTCTCATGTATGATTTTAGTTCAGTT.................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................AGGAAAATTAACATAAGACATACTA........................................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................CTCAGGACTCATAACATTCTT......................................................................................................... 21 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................TTACAATTAATCTCAGGACTCATT................................................................................................................. 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TTTTAGTTCAGTTAGTTAGAAAAGATGT................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CAGTTAGTTAGAAAAGATGTCTCT............................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................AGAACAACCAAACTTATTGTATATTAGACT......................................................................................................................................... 30 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GCAGTTCAAGGACTGGTTCCCGCTGTT........... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TTACAATTAATCTCAGGACTCATAACATT............................................................................................................ 29 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CTCTCCTACCTAGGCAGTTCAAGGAC......................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................TTTAAGGAAAATTAACATGAGACAT............................................................................................................................................................................ 25 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................CAGTGCCCCGTTCTAAGGAAAATT........................................................................................................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CTACCTAGGCAGTTCAAGGAC......................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............AGTAACAAAATTTATTAACGAAATAT.................................................................................................................................................................................................................. 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................ACTCCTACCTAGGCAGTTCAAGGACTGGT..................... 29 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................AGATGTCTCTCCTACCTAGGCAGTTC............................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CACCCGGCGGACGCTCTCATGTATGATTTT........................................................................... 30 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GTTAGTTAGAAAAGATGTCT................................................. 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................AATTAATCTCAGGACTCATAACAT............................................................................................................. 24 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................AGTGCCCCGTTCTAAGGAAAATTAACAT................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CTACCTAGGCAGTTCAAGGACTGG...................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................AAGACATACTAAAGAACAACCAAACT......................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TTACAATTAATCTCAGGACCCATAAAATTT........................................................................................................... 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AGGCAGTTCAAGGACTGGTTCCC................. 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................TTACAATTAATCTCAGGACCCATAAAATT............................................................................................................ 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CCTAGGCAGTTCAAGGACTG....................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................TTTACAATTAATCTCAGGACTCATAA................................................................................................................ 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TAGTTCAGTTAGTTAGAAAAG....................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................AAAGTTAGAAAAGATGTCTCTCCTACCT........................................ 28 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................AGACTTTACAATTAATCTCAGGACCCAT.................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTAGTTCAGTTAGTTAGAAAAGATGTCT................................................. 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................AAGGAAAATTAACATAAGACATACTAA....................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGTTCAAGGACTGGTTCCCGCTGTTAT......... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GGTTCCCGCTGTTATTGTTGCA.. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................CCCGGCGAACGCTCTCATGTATGATT............................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................TAGGCAGTTCAAGGACTGGTT.................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................GGAAAATTAACATAAGACATA........................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CAGTTCAAGGACTGGTTCCCGCTGTT........... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................CGGCGAACGCTCTCATGTATGATTTTAG......................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................CGGCGGACGCTCTCATGTATGATTTTAGTT....................................................................... 30 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................GTTCAGTTAGTTAGAAAAGATGTCTCTC.............................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TAATCTCAGGACCCATAAAATTTTT......................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................TTCAGTTAGTTAGAAAAGATGTCTCT............................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CTGGTTCCCGCTGTTATTGTT..... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................TAGAAAAGATGTCTCTCCTACCTAGGCAGTT................................ 31 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TACCTAGGCAGTTCAAGGACTG....................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CAGGCAGTTCAAGGACTGGTTCCCGC............... 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TTTAGTTCAGTTAGTTAGAAAAGAT..................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................AATCTCAGGACTCATAACATTCTTCAC...................................................................................................... 27 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TCAGTTAGTTAGAAAAGATGTCTCTCCT............................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................AGGAAAATTAACATAAGACATACTAA....................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................CCCATAAAATTTTTCACC..................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TAGTTCAGTTAGTTAGAAAAGATGTCT................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GTTAGTTAGAAAAGATGTCTCTCCT............................................ 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................CTCATGTATGATTTTAGTT....................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TCAGTTAGTTAGAAAAGATGTCTCTCCTA........................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................ATTAACCAAATATATCAGTGCCCCGT..................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TTCAGTTAGTTAGAAAAGATGTC.................................................. 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................TTATTAACGAAATATATCAGTGCCCC....................................................................................................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................TTATTAACCAAATATATCAGTGCCCCGTT.................................................................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................AGATGTCTCTCCTACCTAGGC.................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CTCCTACCTAGGCAGTTCAAGGACTGGTT.................... 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................TAACATAATTTATTACGCAAATAT.................................................................................................................................................................................................................. 24 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..............AGTAACATAATTTATTA........................................................................................................................................................................................................................... 17 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........CAAACAGTAACATAATTTATTA........................................................................................................................................................................................................................... 22 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................CCGGGTGTTATTGTGGCAC. 19 3 12 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............AGTAACATAATTTATT............................................................................................................................................................................................................................ 16 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:2380879-2381128 + dsi_20735 GTT-AAGCTAGTA-TTTCATTGTTTTAAATAATT---GGTTTA--TATAGTCACGGGGCAAGATTCCTTTTAATTGTATTCTGTATGATTTCTTGTTGGTTTGA----ATAACATATAATCTGAAATGTTAATTAGAGTCCTGG------------------------------G---------TATTTTAAAAAGTGGGC---CGCTT----GCGAGA-----GT----ACAT--------ACTAAAATCAAGTCAAT--------------CAATCT--TTTCTACAGAGAGGATGGATCCGTCAAGTTCCTGACCAAGGGCGACAATAACAACGTGG
droSec2 scaffold_6:2576388-2576623 + GTT-AAGCTAGTA-TTTCATTGTTTTAAATAATT-----------TATAGTCACTGGACAAGATTCCTTTAAATTGTATTCTGTATAATTT--------TTTGA----ATAACATATAATCTGAAATGTTAATTAGAGTCCTGA------------------------------G---------TATTGTAAGAAGTGGGC---CGCCT----GCGAGA-----GT----ACAT--------ACTAAAATCAAGTCAAT--------------CAATCT--TTTCTACAGAGAGGATGGATCCGTCAAGTTCCTGACCAAGGGCGACAATAACAACGTGG
dm3 chr3R:2484586-2484774 + GTT-AAGCTTGTG-TTTCGTTGTCTTAAAACATTGTTGTTTTATATTTAGTCACGGGCCAAGATTCCTTTTTATTGTATTCTGTATGATTTCCTTTTGGTTTGGTTTGGTCCCATATAATCC-------------------------------------------------------------------------------------------------------------------------------------CAAT--------------CAATCT--TTTCTGCAGAGAGGACGGATCCGTCAAGTTCCTGACCAAGGGCGACAATAACAACGTGG
droEre2 scaffold_4770:2726435-2726601 + ATT-G-------------------------------------------------------------------------------------T--------TTTGA----ATTCGATTAAAACTTAAATGGTAATTAGAGC-----------------------------------A-------AACAT--TAAGAAGTGGGC---TCCTT----GCGAAA-----GT----ACAT--------ATT--AACCAAGCTAATATTATACTCATCC-CAATC----TTTCACAGGGAGGATGGATCCGTCAAGTTCCTGACCAAGGGCGACAATAACAACGTGG
droYak3 3R:7932233-7932462 - ATT-AATGTTGCA-TTTCATTGCTTTAAAGCATTTT----------------------------------------------------TTT--------TTTTA----ATTTGATTTACGCTTAAACGGTACTTGAAGTCCGCTGCAATACCAATGATATTAGCTAATTTAGCGA-------TAGAA--AAAGTAGTGGGC---TCCTT----GCGAAT-----GT----ACATATTAACAATCTAAAACCAA----------------TTG-CAATCT--TTTTAACAGAGAGGATGGATCCGTCAAGTTCCTGACCAAGGGCGACAATAACAACGTGG
droEug1 scf7180000409791:321301-321358 + T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAGGGAGGATGGATCCGTCAAATTCCTGACCAAAGGCGACAACAACAACGTGG
droBia1 scf7180000302155:2195218-2195286 - TCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCT--TCCTGCGACAGGGAGGATGGTTCCGTCAAGTTCCTGACCAAGGGCGACAATAACAACGTGG
droTak1 scf7180000415261:94416-94506 - TAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------ACTGAATT--GGTCAAT-----AA---TCTTCATT--TCCTTCGACAGGGAGGATGGCTCCGTCAAGTTCCTGACCAAAGGCGACAACAACAACGTGG
droEle1 scf7180000491278:1255201-1255265 + C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT--GCTTTCTACAGGGAGGATGGCTCCGTCAAGTTCCTGACCAAAGGCGACAACAACAACGTTG
droRho1 scf7180000768980:21656-21832 + GGTTTGGCTAATAAATTCATTCTTTTAA---------------------------------------------------------------------------------AATG------------------ATTAAGGTTTTTC------------------------------GGATTTAAAAAAA--TAGAATGTTAGCTTTCGCACCTGTGCTGTAAATTTATCAGTTTT--------------TACTAA----------------TCCACACC--TCTCTTGACAGGGAGGACGGCTCCGTCAAGTTCCTGACCAAGGGTGACAACAACAACGTGG
droFic1 scf7180000453910:877419-877480 + TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCCTCAGGGAGGATGGCTCCGTCAAGTTCCTGACCAAGGGCGACAACAACAACGTCG
droKik1 scf7180000302619:200534-200642 + AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGAGT---TGCACCCAAGCTGGA-----GTTCGTACA--------------AACTAA----------------TCCCTACT--TCTTTTAACAGGGAGGACGGCACCGTCAAGTTCCTTACCAAGGGCGACAACAACAATGTGG
droAna3 scaffold_13340:5549679-5549740 - TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTCTAGGGAGGATGGCACCGTCAAATTCCTGACCAAGGGCGACAATAACAATGTGG
droBip1 scf7180000396708:3263970-3264054 + GAGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----ACAA--------ACAATAATTAA----------------AC---ACT----ACTTTTCAGGGAGGATGGCACCGTCAAATTCCTGACCAAGGGCGACAACAACAACGTGG
dp5 2:19889239-19889293 - T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGGAGGACGGCAGCGTCAAGTTCCTGACCAAGGGCGACAACAACAACGTGG
droPer2 scaffold_3:2637786-2637840 - T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGGAGGACGGCAGCGTCAAGTTCCTGACCAAGGGCGACAACAACAACGTGG
droWil2 scf2_1100000004902:11802029-11802088 + AAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCAGGGAAGATGGCACAGTCAAATTCCTGACCAAGGGTGACAATAATAATGTCG
droVir3 scaffold_13047:6285369-6285461 - GAGTGTGTGTGCAAAGTAATTCATTGAA---------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT--GTATCAAACAGGGAAGACGGCACGGTCAAGTTCCTGACCAAGGGCGACAACAACAATGTGG
droMoj3 scaffold_6540:1790111-1790164 + ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGGGAAGACGGCACAGTTAAGTTTCTGACCAAGGGCGACAACAACAATGTGG
droGri2 scaffold_14906:11606119-11606172 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGGGAAGACGGCACCGTCAAGTTTCTGACAAAGGGCGACAACAACAACGTCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GTT-AAGCTAGTA-TTTCATTGTTTTAAATAATT---GGTTTA--TATAGTCACGGGGCAAGATTCCTTTTAATTGTATTCTGTATGATTTCTTGTTGGTTTGA----ATAACATATAATCTGAAATGTTAATTAGAGTCCTGG------------------------------G---------TATTTTAAAAAGTGGGC---CGCTT----GCGAGA-----GT----ACAT--------ACTAAAATCAAGTCAAT--------------CAATCT--TTTCTACAGAGAGGATGGATCCGTCAAGTTCCTGACCAAGGGCGACAATAACAACGTGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................TGGATCCGTCAAGTTCCTGACCAAGGGC................28114.0014000000120200000000
..........................................................................TGTATTCTGTATGATTTCTTGTTGGTT...............................................................................................................................................................................................................................................27110.001000000050500000000
.........................................................................TTGTATTCTGTATGATTTCTTGTTGGTT...............................................................................................................................................................................................................................................2817.00700000060100000000
..........................................................................TGTATTCTGTATGATTTCTTGTTGGT................................................................................................................................................................................................................................................2617.00700000030400000000
................................................................TCCTTTTAATTGTATTCTGTATGATT..........................................................................................................................................................................................................................................................2615.00500000020300000000
..........................................................................................................................................................................................................................................................................................TTCTACAGAGAGGATGGATCCGTCAAG...............................2715.00500000050000000000
............................................................................TATTCTGTATGATTTCTTGTTGGTT...............................................................................................................................................................................................................................................2514.00400000030100000000
.........................................TA--TATAGTCACGGGGCAAGATTCCTTT..............................................................................................................................................................................................................................................................................2714.00400000030100000000
...........................................................................................................................................................................................................................................................................................TCTACAGAGAGGATGGATCCGTCAAG...............................2614.00400000040000000000
.......................................................................................................................TCTGAAATGTTAATTAGAGTCCTGG------------------------------G---------............................................................................................................................................................2613.00300000020100000000
..............................................................................................................................................................................................................................................................TCAAT--------------CAATCT--TTTCTACAGAGAGGA............................................2613.00300000010200000000
................TCATTGTTTTAAATAATT---GGTTTA--TA.....................................................................................................................................................................................................................................................................................................2613.00300000000300000000
..................................................................................................................................................................................................................................................................T--------------CAATCT--TTTCTACAGAGAGGATGGA........................................2612.00200000010100000000
........................................................................................................................................................................................................................................................ATCAAGTCAAT--------------CAATCT--TTTCTACAGA.................................................2712.00200000010100000000
.............................................TATAGTCACGGGGCAAGATTCCTTT..............................................................................................................................................................................................................................................................................2512.00200000010010000000
..............................................................................TTCTGTATGATTTCTTGTTGGTTTGA----ATA.....................................................................................................................................................................................................................................2912.00200000010100000000
.............................................................................................................................................................................................................................................................................................TACAGAGAGGATGGATCCGTCAAGT..............................2512.00200000020000000000
................................................................................................TGGTTTGA----ATAACATATAATCTGAAA......................................................................................................................................................................................................................2612.00200000020000000000
.....................................................................................TGATTTCTTGTTGGTTTGA----ATAACA..................................................................................................................................................................................................................................2512.00200000000200000000
.............................................................................................................................................................................................................................................................GTCAAT--------------CAATCT--TTTCTACAGAGAGGA............................................2712.00200000000200000000
........................................................................................................................................................................................TATTTTAAAAAGTGGGC---CGCTT----GCGAGA-----....................................................................................................................2812.00200000010100000000
...............................................................TTCCTTTTAATTGTATTCTGTATGATT..........................................................................................................................................................................................................................................................2712.00200000010100000000
...............................................................................TCTGTATGATTTCTTGTTGGT................................................................................................................................................................................................................................................2112.00200000000010001000
.........................................................................................................................................................................................................................................................................................TTTCTACAGAGAGGATGGATCCGTCAAG...............................2812.00200000020000000000
.....................................................................................TGATTTCTTGTTGGTTTGA----ATAACATA................................................................................................................................................................................................................................2711.00100000000010000000
...........................................................................................................................................................................................................................................................................................TCTACAGAGAGGATGGATCCGTCAAGT..............................2711.00100000010000000000
..............................................................................TTCTGTATGATTTCTTGTTGG.................................................................................................................................................................................................................................................2111.00100000001000000000
..................................................................................GTATGATTTCTTGTTGGTTTG.............................................................................................................................................................................................................................................2111.00100000000010000000
.....................................................................................................................................................................................................................GCGAGA-----GT----ACAT--------ACTAAAATCAAG......................................................................................2411.00100000000001000000
..............................................................................TTCTGTATGATTTCTTGTTGGTTTGA----A.......................................................................................................................................................................................................................................2711.00100000000100000000
......................................................................................................................................................................................................................................................................................T--TTTCTACAGAGAGGATG..........................................1811.00110000000000000000
..........................................................................................................................................................................................................................................................................................................GATCCGTCAAGTTCCTGACCAAGGGC................2611.00100010000000000000
.................................T---GGTTTA--TATAGTCACGGGGCAAGA.....................................................................................................................................................................................................................................................................................2511.00100000010000000000
................................................................................................TGGTTTGA----ATAACATATAATCTGAAATGT...................................................................................................................................................................................................................2911.00100000010000000000
.........................................................................................................................TGAAATGTTAATTAGAGTCCTGG------------------------------G---------TAT.........................................................................................................................................................2711.00100000000100000000
.................................................................................TGTATGATTTCTTGTTGGTT...............................................................................................................................................................................................................................................2011.00100000010000000000
....................................................................................................................TAATCTGAAATGTTAATTAGAGTCCTGG------------------------------G---------............................................................................................................................................................2911.00100000000100000000
.........................................................................................................................................................................................................................................................TCAAGTCAAT--------------CAATCT--TTTCTACAGA.................................................2611.00100000010000000000
.............................................................................................................................................................................................................................................................................................TACAGAGAGGATGGATC......................................1711.00100000000001000000
........................................................................................................................................................................................................................................................................................................................CTGACCAAGGGCGACAATAACAACGT..2611.00100000000000001000
GTT-AAGCTAGTA-TTTCATTGTTTTAAAT......................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
................................TT---GGTTTA--TATAGTCACGGGGCAAGA.....................................................................................................................................................................................................................................................................................2611.00100000010000000000
...........................AATAATT---GGTTTA--TATAGTCA...............................................................................................................................................................................................................................................................................................2111.00100000000100000000
.............................TAATT---GGTTTA--TATAGTCACGGGGCAA.......................................................................................................................................................................................................................................................................................2711.00100000000100000000
..............................................................................................................................................................................................................................................................................................ACAGAGAGGATGGATCCGTCAAGT..............................2411.00100100000000000000
.........................................................................................................................................................................................................................................................TCAAGTCAAT--------------CAATCT--TTTCTACAGAGA...............................................2811.00100000010000000000
..............................................................................................................................TGTTAATTAGAGTCCTGG------------------------------G---------TATTTTA.....................................................................................................................................................2611.00100000000100000000
.................CATTGTTTTAAATAATT---GGTTTA--TA.....................................................................................................................................................................................................................................................................................................2511.00100000010000000000
.................................................................................................................................................................................................................................................................AT--------------CAATCT--TTTCTACAGAGAGGATGGA........................................2711.00100000000100000000
............................................................................................................................AATGTTAATTAGAGTCCTGG------------------------------G---------TATT........................................................................................................................................................2511.00100000000100000000
...............................................................TTCCTTTTAATTGTATTCTGTATGAT...........................................................................................................................................................................................................................................................2611.00100000000100000000
................................................................................CTGTATGATTTCTTGTTGGTT...............................................................................................................................................................................................................................................2111.00100000000100000000
...............................................................................................................................................................................................................................................................CAAT--------------CAATCT--TTTCTACAGAGAGGA............................................2511.00100000000010000000
.............................................................................................TGTTGGTTTGA----ATAACATATAATCTG.........................................................................................................................................................................................................................2611.00100000000100000000
..............................................................................................GTTGGTTTGA----ATAACATATAATCTGAA.......................................................................................................................................................................................................................2711.00100000000100000000
.......................................................................................................................TCTGAAATGTTAATTAGAGTCCTGG------------------------------G---------TA..........................................................................................................................................................2811.00100000000100000000
................................TT---GGTTTA--TATAGTCACGGGGCAAGATT...................................................................................................................................................................................................................................................................................2811.00100000010000000000
........................TTAAATAATT---GGTTTA--TATAGTCACGGG...........................................................................................................................................................................................................................................................................................2811.00100000010000000000
.................................................................................TGTATGATTTCTTGTTGGTTTGA----ATAACA..................................................................................................................................................................................................................................2911.00100000000100000000
................................................................................................................................TTAATTAGAGTCCTGG------------------------------G---------TATTTTAAAA..................................................................................................................................................2711.00100000000100000000
........................................................................................................................................................................................................................................................................................................TGGATCCGTCAAGTTCCTGACCAAGG..................2611.00100000000100000000
.......................................................................................................................................................................................................................................................................................................ATGGATCCGTCAAGTTCCTGACCAAGGGCGA..............3111.00100000010000000000
........................................................................................................................................................................................................................................................................................................TGGATCCGTCAAGTTCCTGACCAAGGGCGA..............3011.00100000010000000000
.............................................................................................TGTTGGTTTGA----ATAACATATAATCTGA........................................................................................................................................................................................................................2711.00100000000100000000
..................................................................................................................................................................................................................................................................T--------------CAATCT--TTTCTACAGAGAGGA............................................2211.00100000000100000000
........................................................................................................................................................................................TATTTTAAAAAGTGGGC---CGCTT----GCGA...........................................................................................................................2611.00100000010000000000
.................................................................................TGTATGATTTCTTGTTGGTTT..............................................................................................................................................................................................................................................2111.00100000000010000000
.........................................................................................................................TGAAATGTTAATTAGAGTCCTGG------------------------------G---------TA..........................................................................................................................................................2611.00100000010000000000
..........................................................................................................................................................................................TTTTAAAAAGTGGGC---CGCTT----GCGAGA-----....................................................................................................................2611.00100000000100000000
.............................................................................................................................................................................................TAAAAAGTGGGC---CGCTT----GCGAG..........................................................................................................................2211.00100000000000100000
..................................................TCACGGGGCAAGATTCCTT...............................................................................................................................................................................................................................................................................1911.00100000100000000000
....................................................................................................................................................................................................................................................................................TCT--TTTCTACAGAGAGGATGGATCCGTC..................................2811.00100000010000000000
..................................................................................................................................................................................................................................................................................................AGAGGATGGATCCGTCAAGT..............................2011.00101000000000000000
.................................T---GGTTTA--TATAGTCACGGGGCAAGATT...................................................................................................................................................................................................................................................................................2711.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................TGACCAAGGGCGACAATAACAACGTGG2711.00100000010000000000
....................................................................................................................................................................................................................................................................................................AGGATGGATCCGTCAAGTTCCT..........................2211.00100001000000000000
.......................................................................................................................................................................................................................GAGA-----GT----ACAT--------ACTAAAATCAAGTCAA..................................................................................2611.00100000000100000000
droSec2
GTT-AAGCTAGTA-TTTCATTGTTTTAAATAATT-----------TATAGTCACTGGACAAGATTCCTTTAAATTGTATTCTGTATAATTT--------TTTGA----ATAACATATAATCTGAAATGTTAATTAGAGTCCTGA------------------------------G---------TATTGTAAGAAGTGGGC---CGCCT----GCGAGA-----GT----ACAT--------ACTAAAATCAAGTCAAT--------------CAATCT--TTTCTACAGAGAGGATGGATCCGTCAAGTTCCTGACCAAGGGCGACAATAACAACGTGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................................................ATCT--TTTCTACAGAGAGGATGGATCCG....................................2711.0010001
...................................................................................................................................................................................................................................................................................................................AGTTCCTGACCAAGGGCGACAC...........2211.0011000
..........................................................................................................................................................................................................................................................................................................GATCCGTCAAGTTCCTGACCAAGGGC................2611.0010010
............................................................................................................................................................................................................................................................................................CTACAGAGAGGATGGATCCGTT..................................2211.0010001
......................................................................................................................................................................................................................................................................................T--TTTCTACAGAGAGGATGGATT......................................2211.0010001
dm3
GTT-AAGCTTGTG-TTTCGTTGTCTTAAAACATTGTTGTTTTATATTTAGTCACGGGCCAAGATTCCTTTTTATTGTATTCTGTATGATTTCCTTTTGGTTTGGTTTGGTCCCATATAATCC-------------------------------------------------------------------------------------------------------------------------------------CAAT--------------CAATCT--TTTCTGCAGAGAGGACGGATCCGTCAAGTTCCTGACCAAGGGCGACAATAACAACGTGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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............................................................AGATTCCTTTTTATTGTATTC...................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................GGTTTGGTTTGGTCCCATATAATCC-------------------------------------------------------------------------------------------------------------------------------------.....................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TTCCTTTTGGTTTGGTTTGGT......................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................CTGCAGAGAGGACGGATCCGTT..................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
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...................................TTGTTTTATATTTAGTCACGG............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................CAAGTTCCTGACCAAGGG.................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
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................................................................................................................................................................................................................................................................................................................TCAAGTTCCTGACCAAGGGCGACA............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TTGGTTTGGTCCCATATAAT............................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................CAGAGAGGACGGATCCGTCAAG...............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
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...............................................................................................................................................................................................................................................................CAAT--------------CAATCT--TTTCTGCAGAG................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...............................................................................TCTGTATGATTTCCTTTTGGT................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................GCAGAGAGGACGGATCCGTCA.................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
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.........................................................................................................................................................................................................................................................................................TTTCTGCAGAGAGGACGGATCCGTCA.................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.......................................................................................................................................................................................................................................................................................................ACGGATCCGTCAAGTTCCTGAC.......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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....................................................................................................................................................................................................................................................................................................AGGACGGATCCGTCAAGTTCCT..........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................ATGATTTCCTTTTGGTTTGGT...........................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................CCGTCAAGTTCCTGACCAAGGGCGA..............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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................................TTGTTGTTTTATATTTAGTCACG.............................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................TTTAGTCACGGGCCAAGATTC..................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.....................................GTTTTATATTTAGTCACGGGC..........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................ACGGATCCGTCAAGTTCCTG.........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................AAGGGCGACAATAACAACGT..2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TAGTCACGGGCCAAGATTCCT................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droEre2
ATT-G-------------------------------------------------------------------------------------T--------TTTGA----ATTCGATTAAAACTTAAATGGTAATTAGAGC-----------------------------------A-------AACAT--TAAGAAGTGGGC---TCCTT----GCGAAA-----GT----ACAT--------ATT--AACCAAGCTAATATTATACTCATCC-CAATC----TTTCACAGGGAGGATGGATCCGTCAAGTTCCTGACCAAGGGCGACAATAACAACGTGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................CGTCAAGTTCCTGACCAAGGGC................2211.0011000000
droYak3
ATT-AATGTTGCA-TTTCATTGCTTTAAAGCATTTT----------------------------------------------------TTT--------TTTTA----ATTTGATTTACGCTTAAACGGTACTTGAAGTCCGCTGCAATACCAATGATATTAGCTAATTTAGCGA-------TAGAA--AAAGTAGTGGGC---TCCTT----GCGAAT-----GT----ACATATTAACAATCTAAAACCAA----------------TTG-CAATCT--TTTTAACAGAGAGGATGGATCCGTCAAGTTCCTGACCAAGGGCGACAATAACAACGTGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................AAGGGCGACAATAACAACGT..2013.00300010020000
.............................................................................................................................................................................................................................................................................................................................CAAGGGCGACAATAACAACGT..2112.00200000020000
............................................................................................................................................................................................................................................................................................................TCCGTCAAGTTCCTGACCAAGGGC................2411.00100100000000
..........................................................................................................................................................................................................................................................................................................GATCCGTCAAGTTCCTGAC.......................1911.00100100000000
..........................................................................................................................................................................................................................................................................................................................GACCAAGGGCGACAATAACAAC....2211.00100000010000
droEug1
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAGGGAGGATGGATCCGTCAAATTCCTGACCAAAGGCGACAACAACAACGTGGSizeHit CountTotal NormTotal
No Reads
droBia1
TCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCT--TCCTGCGACAGGGAGGATGGTTCCGTCAAGTTCCTGACCAAGGGCGACAATAACAACGTGGSizeHit CountTotal NormTotal
No Reads
droTak1
TAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--------ACTGAATT--GGTCAAT-----AA---TCTTCATT--TCCTTCGACAGGGAGGATGGCTCCGTCAAGTTCCTGACCAAAGGCGACAACAACAACGTGGSizeHit CountTotal NormTotal
No Reads
droEle1
C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT--GCTTTCTACAGGGAGGATGGCTCCGTCAAGTTCCTGACCAAAGGCGACAACAACAACGTTGSizeHit CountTotal NormTotal
No Reads
droRho1
GGTTTGGCTAATAAATTCATTCTTTTAA---------------------------------------------------------------------------------AATG------------------ATTAAGGTTTTTC------------------------------GGATTTAAAAAAA--TAGAATGTTAGCTTTCGCACCTGTGCTGTAAATTTATCAGTTTT--------------TACTAA----------------TCCACACC--TCTCTTGACAGGGAGGACGGCTCCGTCAAGTTCCTGACCAAGGGTGACAACAACAACGTGGSizeHit CountTotal NormTotal
No Reads
droFic1
TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCCTCAGGGAGGATGGCTCCGTCAAGTTCCTGACCAAGGGCGACAACAACAACGTCGSizeHit CountTotal NormTotal
No Reads
droKik1
AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGAGT---TGCACCCAAGCTGGA-----GTTCGTACA--------------AACTAA----------------TCCCTACT--TCTTTTAACAGGGAGGACGGCACCGTCAAGTTCCTTACCAAGGGCGACAACAACAATGTGGSizeHit CountTotal NormTotal
No Reads
droAna3
TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTCTAGGGAGGATGGCACCGTCAAATTCCTGACCAAGGGCGACAATAACAATGTGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................CTAGGGAGGATGGCACCGTCA.................................2111.001100000
....................................................................................................................................................................................................................................................................................................................ATTCCTGACCAAGGGCGACA............2011.001100000
droBip1
GAGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----ACAA--------ACAATAATTAA----------------AC---ACT----ACTTTTCAGGGAGGATGGCACCGTCAAATTCCTGACCAAGGGCGACAACAACAACGTGGSizeHit CountTotal NormTotal
No Reads
dp5
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGGAGGACGGCAGCGTCAAGTTCCTGACCAAGGGCGACAACAACAACGTGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................GAGGACGGCAGCGTCAAGTTCCTGACC......................2711.0010001000000
.............................................................................................................................................................................................................................................................................................................GCGTCAAGTTCCTGACCAAGGGC................2311.0010100000000
.......................................................................................................................................................................................................................................................................................................ACGGCAGCGTCAAGTTCCTGACCAAGGGC................2911.0010000001000
droPer2
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGGAGGACGGCAGCGTCAAGTTCCTGACCAAGGGCGACAACAACAACGTGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCAGGGAAGATGGCACAGTCAAATTCCTGACCAAGGGTGACAATAATAATGTCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................GCACAGTCAAATTCCTGACCAAGGGT................2611.00100100
..................................................................................................................................................................................................................................................................................................GGAAGATGGCACAGTCAAATT.............................2111.00100100
..........................................................................................................................................................................................................................................................................................................GCACAGTCAAATTCCTGACCAAGGGTGAC.............2911.00100100
.........................................................................................................................................................................................................................................................................................................................TGACCAAGGGTGACAATAATAATGT..2511.00100010
.......................................................................................................................................................................................................................................................................................................ATGGCACAGTCAAATTCCT..........................1911.00100010
droVir3
GAGTGTGTGTGCAAAGTAATTCATTGAA---------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT--GTATCAAACAGGGAAGACGGCACGGTCAAGTTCCTGACCAAGGGCGACAACAACAATGTGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................AAGTTCCTGACCAAGGGC................1813.003001000020000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................GACGGCACGGTCAAGTTCCT..........................2011.001000000000000000000000000000010000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................CAAGGGCGACAACAACAAT....1911.001000000000000000000000000000000000100000000000000000000000000000
...........................A---------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT--GTATCAAACAGGGAAG.............................................2111.001000000000000000000000000000000000000001000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................GACCAAGGGCGACAACAACAAT....2211.001000000000100000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................GACCAAGGGCGACAACAACA......2011.001000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................GAAGACGGCACGGTCAAGT..............................1911.001000000000000000000000000000000000001000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................CAAGTTCCTGACCAAGGGCGACAAC..........2511.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGGGAAGACGGCACAGTTAAGTTTCTGACCAAGGGCGACAACAACAATGTGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGGGAAGACGGCACCGTCAAGTTTCTGACAAAGGGCGACAACAACAACGTCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 05:37 PM