ID:

dsi_20730

 Coordinate:

2r:1637794-1637943 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.0 -18.7 -18.7

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
DMCR1ALINECR1-
mature
  1. 2l:23201675-23201697 +
  2. 2r:286720-286742 -
  3. 2r:508826-508848 +
  4. 2r:873007-873029 +
  5. 2r:1588684-1588706 -
  6. dsi_20730  2r:1637856-1637878 -
  7. 2r:2479554-2479576 +
  8. 2r:10201034-10201056 +
  9. 3l:24181433-24181455 +
  10. x:20773821-20773843 -
  11. node_80147:2111-2133 +
  12. node_73440:2019-2041 +
  13. node_59504:2936-2958 -
  14. node_492:910-932 +
  15. node_63646:896-918 +
  16. node_86281:376-398 +
  17. node_4799:7080-7102 -
star

Sense Strand Reads

TTAGTCCTGACTCTCTGGCGCTCTTAAAGCAATCAATTCTTACTTTTTAACGCATAATTAGATCTTTCTAATATTTATATAGTTCCTCGTTGCCGTATTTTTTTATTAATCGCCTCTATCTTCTCGCGAATCGAGCCGTACAATACACGTCAGCGGTGCGCTAATAATATATTACAAAATATTATTTAATTACATTTCAGATTTTTCGCAAGGAAAGATACGATAAAATAAGAAACAGTATCTTAGGCGA
**************************************************(((((.((((((....))))))...............(((((.(((.......((((...((.(((....(((....)))..))).))...)))).))).))))))))))..((((((((........))))))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
...................................................................................................................CTATCTTCTCGCGAATCGAGCCG................................................................................................................ 23 0 17 0.88 15 0 15 0 0 0 0 0
........................................................................................................................................................................................................................GATACGATAAAATAAGAAACAGTATA........ 26 1 2 0.50 1 0 0 0 0 1 0 0
.........................................................................................................................................................................................................TTTTTCGCAAGGAAAGATACGATAAAAA..................... 28 1 2 0.50 1 0 0 0 1 0 0 0
.......................................TTACTTTTTAACGCATAATTAGATCT......................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0
..............................................................................ATAGTACCTCGTTGC............................................................................................................................................................. 15 1 3 0.33 1 0 0 1 0 0 0 0
...................................................................................................................CTATCTTCTCGCGAATCGAGCCGT............................................................................................................... 24 0 17 0.24 4 4 0 0 0 0 0 0
............................................................................ATATAGTTCCTCCTT............................................................................................................................................................... 15 1 13 0.23 3 3 0 0 0 0 0 0
.............................................................................TATAGTACCTCGTTGCCA........................................................................................................................................................... 18 2 5 0.20 1 0 0 1 0 0 0 0
...........................................................................................................................TCGCGAATCGAGCCGGATAATAT........................................................................................................ 23 3 6 0.17 1 0 0 1 0 0 0 0
.................................................................................................................................................................................................ATTTCAGATTTTTCGCGAAAAAA.................................. 23 3 6 0.17 1 0 0 0 0 0 1 0
..................................................................................................................TCTATCTTCTCGCGAATCGAGCCGTA.............................................................................................................. 26 0 15 0.13 2 0 0 0 0 0 1 1
....................................................................................................................TATCTTCTCGCGAATCGAGCCG................................................................................................................ 22 0 20 0.10 2 2 0 0 0 0 0 0
....................................................................................................................TATCTTCTCGCGAATCGAGCCGTA.............................................................................................................. 24 0 20 0.10 2 1 0 0 0 0 0 1
...................................................................................................................CTATCTTCTCGCGAATCGAGCCGTA.............................................................................................................. 25 0 15 0.07 1 1 0 0 0 0 0 0
...................................................................................................................CTATCTTCTCGCGAATCGAGCC................................................................................................................. 22 0 17 0.06 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AAGAAACAGTAGCTT...... 15 1 17 0.06 1 0 0 0 0 0 1 0
..................................................................................................................TCTATCTTCTCGCGAATCGAGCCGT............................................................................................................... 25 0 17 0.06 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................GAAAGATACGGTAAAAAA.................... 18 2 18 0.06 1 1 0 0 0 0 0 0
...................................................................................................................CTATCTTCTCGCGAATCGAGC.................................................................................................................. 21 0 19 0.05 1 0 0 0 0 0 0 1
.....................................................................................................................ATCTTCTCGCGAATCGA.................................................................................................................... 17 0 20 0.05 1 1 0 0 0 0 0 0
...................................................................................................................CTATATCTTCGCGAATCGAGCCGTA.............................................................................................................. 25 3 20 0.05 1 0 0 0 1 0 0 0
......CTGACTCTCTGCCGCTCTTAAAGAAA.......................................................................................................................................................................................................................... 26 2 20 0.05 1 0 0 0 1 0 0 0
......................................................................................................................TATTCTCGCGAATCGAGCCGT............................................................................................................... 21 1 20 0.05 1 0 0 0 0 1 0 0
.................................................................................................................CTGTATCTTCTCGCGAATCGAGCCGT............................................................................................................... 26 1 20 0.05 1 1 0 0 0 0 0 0
.........................................................................................................................TCTCGCGAATCGAGC.................................................................................................................. 15 0 20 0.05 1 1 0 0 0 0 0 0
......................................................................................................................TCTTCTCGCGAATCGAGCC................................................................................................................. 19 0 20 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

AATCAGGACTGAGAGACCGCGAGAATTTCGTTAGTTAAGAATGAAAAATTGCGTATTAATCTAGAAAGATTATAAATATATCAAGGAGCAACGGCATAAAAAAATAATTAGCGGAGATAGAAGAGCGCTTAGCTCGGCATGTTATGTGCAGTCGCCACGCGATTATTATATAATGTTTTATAATAAATTAATGTAAAGTCTAAAAAGCGTTCCTTTCTATGCTATTTTATTCTTTGTCATAGAATCCGCT
**************************************************(((((.((((((....))))))...............(((((.(((.......((((...((.(((....(((....)))..))).))...)))).))).))))))))))..((((((((........))))))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 M024
male body
.........................................................................................................................AGAGCGCTTAGCTCGGCATGTTATG........................................................................................................ 25 0 3 1.00 3 3 0 0 0 0 0 0
...........................................................................................................................AGCGCTTAGCTCGGCATGT............................................................................................................ 19 0 3 0.67 2 2 0 0 0 0 0 0
.........................................................................................................................AGAGCGCTTAGCTCGGCATGTTAT......................................................................................................... 24 0 3 0.67 2 1 1 0 0 0 0 0
......................................................................................................................AGAAGAGCGCTTAGCTCGGCATGTT........................................................................................................... 25 0 3 0.67 2 1 0 0 1 0 0 0
.............................................................................................................................CGCTTAGCTCGGCATGTTAT......................................................................................................... 20 0 3 0.67 2 0 1 0 0 0 1 0
............................................................................................................................................................................................................AAGCCTTCCTTTCGATGCTCT......................... 21 3 2 0.50 1 0 0 0 0 1 0 0
...........................................................................................................................AGCGCTTAGCTCGGCAT.............................................................................................................. 17 0 20 0.50 10 1 9 0 0 0 0 0
..........................................................................................................................AAGCGCTTAGCTCGGCATGTTATGTGC..................................................................................................... 27 1 5 0.40 2 0 0 2 0 0 0 0
...........................................................................................................................AAAGCTTAGCTCGGCATGTTAT......................................................................................................... 22 2 3 0.33 1 0 0 1 0 0 0 0
.........................................................................................................................AGAGCGCTTAGCTCGGCATGTTATGT....................................................................................................... 26 0 3 0.33 1 1 0 0 0 0 0 0
...........................................................................................................................AGCGCTTAGCTCGGCATGTTATGTGC..................................................................................................... 26 0 3 0.33 1 0 0 1 0 0 0 0
........................................................................................................................AAGAGCGCTTAGCTCGGCATGTTATG........................................................................................................ 26 0 3 0.33 1 1 0 0 0 0 0 0
...........................................................................................................................AGCGCTTAGCTCGGCATGTTATGT....................................................................................................... 24 0 3 0.33 1 1 0 0 0 0 0 0
..........................................................................................................................GAGCGCTTAGCTCGGCATGTTATG........................................................................................................ 24 0 3 0.33 1 1 0 0 0 0 0 0
....................................................................................................................ATAGAAGAGCGCTTAGCTCGGCATGTT........................................................................................................... 27 0 3 0.33 1 0 0 0 1 0 0 0
.............................................................................................................................CGCTTAGCTCGGCATGTTATG........................................................................................................ 21 0 3 0.33 1 1 0 0 0 0 0 0
..........................................................................................................................AAGCGCTTAGCTCGGCATGTTATGT....................................................................................................... 25 1 5 0.20 1 0 0 1 0 0 0 0
..................................................................................................................AGATAGAAGAGCGCTTAGCTCGGCAT.............................................................................................................. 26 0 15 0.13 2 1 1 0 0 0 0 0
.........................................................................AAATATATCAAGGAGGAAAGT............................................................................................................................................................ 21 3 8 0.13 1 0 1 0 0 0 0 0
.................CGCGAGGATTTCGTTAGT....................................................................................................................................................................................................................... 18 1 9 0.11 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................TTCTTTGTCATAGGAT..... 16 1 9 0.11 1 0 1 0 0 0 0 0
.....................................................TATTAAGCTAGATAGATT................................................................................................................................................................................... 18 2 14 0.07 1 0 0 0 0 0 1 0
...........................................................................GTATATCAAGGAGGAAAGGC........................................................................................................................................................... 20 3 14 0.07 1 0 1 0 0 0 0 0
..................................................................................................AAAAAGTAATTAGCGG........................................................................................................................................ 16 1 15 0.07 1 0 0 0 1 0 0 0
..................................................................................................................AGATAGAAGAGCTCTTAGCTCGGCAT.............................................................................................................. 26 1 17 0.06 1 1 0 0 0 0 0 0
..................................................................................................................AGATAGAAGAGCGCTTAGCTCGGC................................................................................................................ 24 0 17 0.06 1 1 0 0 0 0 0 0
.........................................................................................................................AGAGCGCTTAGCTCG.................................................................................................................. 15 0 20 0.05 1 0 0 0 1 0 0 0
..................GCGAGAATTTCGTTAG........................................................................................................................................................................................................................ 16 0 20 0.05 1 0 1 0 0 0 0 0
.......................................................................................................................GAAGAGCGCTTAGCTCG.................................................................................................................. 17 0 20 0.05 1 0 1 0 0 0 0 0
......................................................................................................................AGAAGAGCGCTTAGCTCG.................................................................................................................. 18 0 20 0.05 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................CAAGTGTTCCTTTCTGTGC............................ 19 3 20 0.05 1 0 0 0 0 0 0 1
..................GCGAGAATTTCGTTAGT....................................................................................................................................................................................................................... 17 0 20 0.05 1 0 1 0 0 0 0 0
................CTGCGAGAATTTCGTTAGTTA..................................................................................................................................................................................................................... 21 1 20 0.05 1 0 1 0 0 0 0 0
.................TGCGAGAATTTCGTTAGTTA..................................................................................................................................................................................................................... 20 1 20 0.05 1 0 1 0 0 0 0 0
.................TGCGAGAATTTCGTTAG........................................................................................................................................................................................................................ 17 1 20 0.05 1 0 1 0 0 0 0 0
...................CGAGAATTTCGTTAG........................................................................................................................................................................................................................ 15 0 20 0.05 1 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:1637744-1637993 - dsi_20730 TTA--------------G-----------------TC-----CT--GACTCTCTG--GCG---------------------------CTCT------------TAAAGCAATCAATT-CTTA-CTTT-TTA-AC-----------------------------GCATAATTAGATCTTTCTAATATT-------------------------TATA--TAGTTC-------CT-CGT-TGCCGTATTT----TTTTATT--AATCGCCTCTATCT-TCTCGCGAATCGAGCCGTACAATACAC--GTCAGCGGTGCGC--------------------------------------------------------------------------TAATAATATATTACAAAATATTATTTAATT---ACATTTCAGATTT-----------TTCGCAAG----------GAAAGAT-----------------------------------------ACGATAAAATAAGAAACAGT----AT--CTTAGGCGA
droSec2 scaffold_60:66326-66576 + dse_1498 TTA--------------G-----------------TC-----CT--GACTCTCTG--GCG---------------------------CTCT------------TAAAGCAATCAATT-CTTA-CTTT-TTA-AC-----------------------------GCATAATTAGATCTTTCTAATATT-------------------------TATA--TAGTTC-------CT-CGT-TGCCGTATTTT---TTTTATT--AATCGCCTCTATCT-TCTCGCGAATCGAGCCGTACAATACAC--GTCAGCGGTGCTC--------------------------------------------------------------------------TAATAATATATTACAAAATATTATTTAATT---ACATTTCAGATTT-----------TTCGCAAG----------GAAAGAT-----------------------------------------ACGATAAAATAAGAAACAGT----AT--CTTAGGCGA
dm3 chr2R:600231-600473 - GTA--------------A-----------------TC-----TT--GGCTCTCTG--CCG---------------------------CTCT------------TAAAGCAATCAATT-CTTA-CTTT-TTA-AC-----------------------------ACATAATTAGATCTTTCTAATATT-------------------------GATA--TATTTC----------------------------------------CGCGTCTATCT-TCTCGCGAATCGAGCCGTACAATACAC--GGCAGCGCACCTAGCTTC--------------------------------------------------------AATATATTGCTTATAATAATATATTATAAGATATCATTTAATT---TTATTTCAGATTT-----------TTCGCAAG----------GAAAGAT-----------------------------------------ATGATAAAATAAGAAACAGT----AT--CTTAGGCGA
droEre2 scaffold_4784:24441703-24441858 - ATA--------------A-----------------TG-----CT--GACTCTCTG--CCG---------------------------CTCC------------TAAAGCGATCAATA-CTTACT-TTTT-GTAC-----------------------------ACATAATTAGATCTTACTAATATT-------------------------TACA--TATTTC-------CT-TCT-TGCTTTACTT----TTTTCTA--TGTCGCGTCTATCT-TCACGCTAATCGAGCCATACGATACAC--GGCAGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 v2_chr2h_random_004:1116651-1116882 + CTT--------------A-----------------TT-----CT--GACCTTCTG--CCG---------------------------CTCT------------TAAAGCTATAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTAAAGCGGACGATACGC--GTTAGCGGCCCTAGGTCGGTAGTTATAAAACCCAAAATATTACAAATTCACTTTTACCAATGTAATCACTCCACAGTATTTTGCTTAATATAATATATTT--AAATATAATTTGATT---ACATTTCAGATTT-----------TTCGCAAG----------GAAAGAT-----------------------------------------ACGATAAAATAAGAAACAGC----AT--CTTGGGGGA
droEug1 scf7180000407415:27832-27992 + GTG--------------T-TACAATACCCTCTACC--------------------AC---ATTACAT--------------------------------------------CCAATATTTCT-CCTA-CTA-ACGTAAAAATTGTCTTACTAAACCAATTAGCTCATATTT--------------------------------------------------------------------AATTTATTTTTT-TTTAATTTTCCACTCGGTACTAT-CCCCGTGTTCCGAGCCGTACGATAGAC--GGCAGCGCCCCGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301558:10095-10234 - CAA--------------A-----------------AT-----CT--CCCTCTCTG--CTT---------------------------TTCT------------TGAAACTATTAATA-TTGAACT-TTC-TAGC-----------------------------ACAGATTTAGATCCT-----------------------------------A--TTTAATTT-------CATA-G-TACCATATTTCTA---ACTTT--CTTCGCGTCTGTTA-TATTGCTCTTTGTGCGTTACGACACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000414133:3156-3304 - CAA--------------A-----------------TT-----CT--GACTCTCTG--CCT---------------------------CTCC------------TAAAACGATTAATA-TTAAATT-TCC-TAGC-----------------------------ACAGAATTAGATCCT-----------------------------------A--CTTTTTTT-------CCTC-G-AACTATATTTTTA-TTTTCTA--CATCGCGTCTATCA-TCTCGCGAATCGTGCCGTACGATACAC--GGCAGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000490213:48890-49094 - TTAAAT------ATCTAT-----------------TT-----CT--GACTCTTTG--CCG---------------------------CTCT------------TAAAACGTTTAATC-CTTGAGTCA-CTA-AC-----------------------------TCAA------ATGCT-----------------------------------A--CTT--TTT--C----CC-A-GGACTTTTATTCATAATTTGATA--TCTCACGTCTATCC-TCTCGCGAATCGTGCAGTACGACACGGTTGGTTGGGCTG-----------------------------------------------------------------------------------------------------------------------------------GTACTTAAAAA----------AAAATAA-----------------------------------------ACAATAAAATAAA--ACAAC----ATGCTATATTCTT
droRho1 scf7180000777163:6573-6848 - TTTTCCTGTAATATCAAA-----------------TC-----TT--GACTCTCTG--CCG---------------------------CTCC------------TAAAACGATTGATA-CTTGCT-TCAT-TGGC-----------------------------ACAAGATT-GATCTAACTATT-----------------------------A--CTTTTTTC-------CCCG-G-ACCTTTACCTTTATTTTCCTA--TCTCGCGTCTATCT-TATCGCGAAAAAAAAAGAAAA--AAAA--GGAAGCAAATTTCGG---------------------------------------------------------------------------------------------------------------------------------CAAGCCGACGTTTATATACTTGCAGTTATTACAAAACGACTACATTTCGATTTTTATGTCTGTATTACTAAAAACAATGAAGCAATGTCGAT--TTGGCGCTG
droFic1 scf7180000454069:67982-68198 + ATA--------------G-----------------TCAGAACGTAATACTCTGTA--AGGATCATGT--------------------------------------TAGCGATCACTT-CTAACC-TTCT-AAGC-----------------------------ACATAACTAGATCTAAT-----------------------TGTGTTCT-TC--CTCATTTT--C----CT-C-GGT-CTCTACTT--ATTTTCCTC--AATCGCGACTCTTT-TCTCGCGAACCGAGCCGTACGATACAC--GGCAGCGCCCCTTGGTCGG--------------------------------------------------------------------------CATATAAGCATATTTTTTTTA-GT---ATATTTTAGTATT-----------TT-----------------------------------------------------------------------------------------------------
droKik1 scf7180000298443:9239-9405 - TTACGG-----------ATTACAACCG--------------------CCTCTCTG--TT-ATTATTATTCGTAGTGATAACCCTTCTATAT------------TAAAAACTTTATTA-CTTGTA------------------------------------------GAGTTAGCTCGT------AGTGTAGCACCG----------------------------------------T-AGTCTAATTT-----TCATTC--TAACCCGTCTATCTAGTTCGCGATTCGTGCCGTACGTCACAC--GGCTGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_705:578-862 - GTTCGG-----------ACTAAAATGGTCTCTACC--------------------AC---ATCTTGTCACCT-----------TTCT----CTACTAACAATCTTAAATCGCTTATA-TTAACCG-CCT-TATC-----------------------------AGTGCA-----------------ATACTCTTTCTCGTGA------TATCTTTC------------------------------------TCCTACT--TTTCGCTTAACTAT-TTCCGCGATTCGAGCCGTACGTCACGC--GGCAGCGTCCCTCTGTGGGCTG----------------------------------------------------AACGTATGCCGTGGGAACCGCGCAAAAAAAATATTCTTCAAAC---CCATATTCCTCAG-----------TCCGCAAAAATCTGTATGGTTCTACCCATTAT--------------------------------------------------AAAA----CT--CATAGACCA
droBip1 scf7180000391380:12547-12681 + TTC-GA-----------ACTACAATGCTCTCTACT--------------------CT---ATTACAT-------------------------------------------CTCTTTC-CTGA-CCCT-CTA-AC-----------------------------TTAAAATA-----------------TAGAATTT---TA--AATTTCC--TTAC--TAACTC-------CT-CTT-AGCT-TAATT----GTTAATA--AATAAC-----------------------------------------------------------------------------------------------------------------------------------------------------TTA-AT---ATATTCTAACA---------------------------------------------------------------------------------------------------------------AATCG
dp5 Unknown_group_219:5217-5354 - CGG--------------ATTATAATTCCCTCTACT-----------------------CT---------------------------CTTA------------TTAAATAACTAATC-CTTACAC-ACC-T----------------------------------------------TTCTAGTAATTAGTAATTGTTGTGG------TATTTGTA--TTTTGA-------TT-GCA-TGCTTAGTTT----CTTAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTTAGCGCTAAT----TT--TTCTCGAAT
droPer2 scaffold_6:392758-392968 - CGG--------------ATTATAATTCCCTCTACC--------------------AT---ATCATATCCACCACTAATTGTCTTCCTCTTA------------TTAAATTACTAATC-CTTACAC-ACC-T----------------------------------------------TTCTAGTAATTAATAATTGTTGTGG------TATTTTTA--TTTTTA---------------------------------TG--CAGTAATTGCATCG-CCTCTTGAAAGATGC-GGTCATTGCAT--GTCAACGTCCACAAA---------------------------------------------------------------------------------------------------------------------------------------------------TATACAAATTCGGGAATTTG-------------------------------------------CTTAC----TT--TTTGGTTTT
droWil2 scf2_1100000004936:194678-194922 + GCTCTG-----------ATTACAATCTTCTATCCC-----------------CTGTA---ATCGGCTCAGAG-----------TTTT----CTATTAATATGCTTAAAACATCTATC-CTATCCC-TTT-TAGT-----------------------------TAATAGCTAGCTATAGT------------------ATAA------TGTGTTTG------------------------TCT----G----TCTTTTC--TATTGTGTATTTTGTCCACGCGATTCGTGCCGTGCGTTATAC--GGCTTTTTTA-------------------------------------------------------------------TTATTTTTTAAA----------------------TTA-AA---ATCTCCCAGAATAACGAGCAAGTCTTTGTC-A----------GAGAGAT-----------------------------------------ATGAGGAAATAAG------------------------
droVir3 scaffold_12958:1965983-1966173 + GTGATG-----------ACTATAACAAGCATTA---C-----AG--AGCATTCTG--CCC---------------------------TTCCTTGTT-------TAAAGTCTTTTATT-CTAAACT-ATT-TAAC-----------------------------AAGTAGATATTTTTATT-----------------TGTAATTG---TATTTTTA--CACATACTTGTAGCTTG-T-A-TCGATTTT----TTTTACTATTTTTTTGATTTTTA-CTTTGCATTTCGTGTCGAACGTTACAT--GACTGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:31034598-31034681 + TAT--------------A-----------------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAACATATCCTT--ATTTTTTTTTTATAGATAT-----------TTAGAAAG----------GAAAGAT-----------------------------------------ATGATAAAATACGGAATAGT----AT--TTTGAGCGA
droGri2 scaffold_15126:1606802-1606893 + ATATAA-----------TATAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAC--TCATATACTTCCGTT---GCATTTTAGATTT-----------TTCGCAAG----------GAACGAT-----------------------------------------ATGATAAAATACGCAACAGT----AT--TTTGGGCGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTA--------------G-----------------TC-----CT--GACTCTCTG--GCG---------------------------CTCT------------TAAAGCAATCAATT-CTTA-CTTT-TTA-AC-----------------------------GCATAATTAGATCTTTCTAATATT-------------------------TATA--TAGTTC-------CT-CGT-TGCCGTATTT----TTTTATT--AATCGCCTCTATCT-TCTCGCGAATCGAGCCGTACAATACAC--GTCAGCGGTGCGC--------------------------------------------------------------------------TAATAATATATTACAAAATATTATTTAATT---ACATTTCAGATTT-----------TTCGCAAG----------GAAAGAT-----------------------------------------ACGATAAAATAAGAAACAGT----AT--CTTAGGCGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................CTATCT-TCTCGCGAATCGAGCCG...................................................................................................................................................................................................................................................................23170.8815000001500000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT-----------------------------------------ACGATAAAATAAGAAACAGT----AT--A........2620.50100000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-----------TTCGCAAG----------GAAAGAT-----------------------------------------ACGATAAAAA...........................2820.50100000010000000000
.......................................................................................................................TTA-CTTT-TTA-AC-----------------------------GCATAATTAGATCT.......................................................................................................................................................................................................................................................................................................................................................................................2620.50100000000001000000
.............................................................................................................................................................................................................................................................................CTATCT-TCTCGCGAATCGAGCCGT..................................................................................................................................................................................................................................................................24170.24400000000004000000
............................................................................................................................................................................................................................................................................TCTATCT-TCTCGCGAATCGAGCCGTA.................................................................................................................................................................................................................................................................26150.13200010001000000000
..............................................................................................................................................................................................................................................................................TATCT-TCTCGCGAATCGAGCCG...................................................................................................................................................................................................................................................................22200.10200000000002000000
..............................................................................................................................................................................................................................................................................TATCT-TCTCGCGAATCGAGCCGTA.................................................................................................................................................................................................................................................................24200.10200010000001000000
.............................................................................................................................................................................................................................................................................CTATCT-TCTCGCGAATCGAGCCGTA.................................................................................................................................................................................................................................................................25150.07100000000001000000
.............................................................................................................................................................................................................................................................................CTATCT-TCTCGCGAATCGAGCC....................................................................................................................................................................................................................................................................22170.06100000000001000000
............................................................................................................................................................................................................................................................................TCTATCT-TCTCGCGAATCGAGCCGT..................................................................................................................................................................................................................................................................25170.06100000000001000000
.............................................................................................................................................................................................................................................................................CTATCT-TCTCGCGAATCGAGC.....................................................................................................................................................................................................................................................................21190.05100010000000000000
...............................................................................................................................................................................................................................................................................ATCT-TCTCGCGAATCGA.......................................................................................................................................................................................................................................................................17200.05100000000001000000
....................................................................................................................................................................................................................................................................................TCTCGCGAATCGAGC.....................................................................................................................................................................................................................................................................15200.05100000000001000000
................................................................................................................................................................................................................................................................................TCT-TCTCGCGAATCGAGCC....................................................................................................................................................................................................................................................................19200.05100000000001000000
droSec2
TTA--------------G-----------------TC-----CT--GACTCTCTG--GCG---------------------------CTCT------------TAAAGCAATCAATT-CTTA-CTTT-TTA-AC-----------------------------GCATAATTAGATCTTTCTAATATT-------------------------TATA--TAGTTC-------CT-CGT-TGCCGTATTTT---TTTTATT--AATCGCCTCTATCT-TCTCGCGAATCGAGCCGTACAATACAC--GTCAGCGGTGCTC--------------------------------------------------------------------------TAATAATATATTACAAAATATTATTTAATT---ACATTTCAGATTT-----------TTCGCAAG----------GAAAGAT-----------------------------------------ACGATAAAATAAGAAACAGT----AT--CTTAGGCGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................TATCT-TCTCGCGAATCGAGCCGTAC................................................................................................................................................................................................................................................................25200.1022000
............................................................................................................................................................................................................................................................................TCTATCT-TCTCGCGAATCGAGCCGTA.................................................................................................................................................................................................................................................................26200.1022000
............................................................................................................................................................................................................................................................................TCTATCT-TCTCGCGAATCGAGCCGT..................................................................................................................................................................................................................................................................25200.0511000
............................................................................................................................................................................................................................................................................TCTATCT-TCTCGCGAATCGAGCC....................................................................................................................................................................................................................................................................23200.0511000
.............................................................................................................................................................................................................................................................................CTATCT-TCTCGCGAATCGAGC.....................................................................................................................................................................................................................................................................21200.0510100
............................................................................................................................................................................................................................................................................TCTATCT-TCTCGCGAATCGAGCCGC..................................................................................................................................................................................................................................................................25200.0511000
............................................................................................................................................................................................................................................................................TCTATCT-TCTCGCGAATCGAGCCG...................................................................................................................................................................................................................................................................24200.0511000
................................................................................................................................................................................................................................................................................TCT-TCTCGCGAATCGAGCCG...................................................................................................................................................................................................................................................................20200.0511000
dm3
GTA--------------A-----------------TC-----TT--GGCTCTCTG--CCG---------------------------CTCT------------TAAAGCAATCAATT-CTTA-CTTT-TTA-AC-----------------------------ACATAATTAGATCTTTCTAATATT-------------------------GATA--TATTTC----------------------------------------CGCGTCTATCT-TCTCGCGAATCGAGCCGTACAATACAC--GGCAGCGCACCTAGCTTC--------------------------------------------------------AATATATTGCTTATAATAATATATTATAAGATATCATTTAATT---TTATTTCAGATTT-----------TTCGCAAG----------GAAAGAT-----------------------------------------ATGATAAAATAAGAAACAGT----AT--CTTAGGCGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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..................................................................................................................................................................................................................................................................................T-TCTCGCGAATCGAGCCGTAC................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................................................................................................................................CGCGTCTATCT-TCTCGCGAATCGAGA.....................................................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................GTCTATCT-TCTCGCGAATCGAGCC....................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................CTATCT-TCTCGCGAATCGAGC.....................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TCT-TCTCGCGAATCGAGCCGT..................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
................................................CTCTCTG--CCG---------------------------CTCT------------TAAAGCAATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................GTCTATCT-TCTCGCGAATCGAGCCG...................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................CGCGTCTATCT-TCTCGCGAA...........................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................CGTCTATCT-TCTCGCGAATCGAGC.....................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........................................................CCG---------------------------CTCT------------TAAAGCAATCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................TCTCTG--CCG---------------------------CTCT------------TAAAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................CGCGTCTATCT-TCTCGCGAATC.........................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ATA--------------A-----------------TG-----CT--GACTCTCTG--CCG---------------------------CTCC------------TAAAGCGATCAATA-CTTACT-TTTT-GTAC-----------------------------ACATAATTAGATCTTACTAATATT-------------------------TACA--TATTTC-------CT-TCT-TGCTTTACTT----TTTTCTA--TGTCGCGTCTATCT-TCACGCTAATCGAGCCATACGATACAC--GGCAGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
CTT--------------A-----------------TT-----CT--GACCTTCTG--CCG---------------------------CTCT------------TAAAGCTATAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTAAAGCGGACGATACGC--GTTAGCGGCCCTAGGTCGGTAGTTATAAAACCCAAAATATTACAAATTCACTTTTACCAATGTAATCACTCCACAGTATTTTGCTTAATATAATATATTT--AAATATAATTTGATT---ACATTTCAGATTT-----------TTCGCAAG----------GAAAGAT-----------------------------------------ACGATAAAATAAGAAACAGC----AT--CTTGGGGGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
GTG--------------T-TACAATACCCTCTACC--------------------AC---ATTACAT--------------------------------------------CCAATATTTCT-CCTA-CTA-ACGTAAAAATTGTCTTACTAAACCAATTAGCTCATATTT--------------------------------------------------------------------AATTTATTTTTT-TTTAATTTTCCACTCGGTACTAT-CCCCGTGTTCCGAGCCGTACGATAGAC--GGCAGCGCCCCGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CAA--------------A-----------------AT-----CT--CCCTCTCTG--CTT---------------------------TTCT------------TGAAACTATTAATA-TTGAACT-TTC-TAGC-----------------------------ACAGATTTAGATCCT-----------------------------------A--TTTAATTT-------CATA-G-TACCATATTTCTA---ACTTT--CTTCGCGTCTGTTA-TATTGCTCTTTGTGCGTTACGACACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CAA--------------A-----------------TT-----CT--GACTCTCTG--CCT---------------------------CTCC------------TAAAACGATTAATA-TTAAATT-TCC-TAGC-----------------------------ACAGAATTAGATCCT-----------------------------------A--CTTTTTTT-------CCTC-G-AACTATATTTTTA-TTTTCTA--CATCGCGTCTATCA-TCTCGCGAATCGTGCCGTACGATACAC--GGCAGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TTAAAT------ATCTAT-----------------TT-----CT--GACTCTTTG--CCG---------------------------CTCT------------TAAAACGTTTAATC-CTTGAGTCA-CTA-AC-----------------------------TCAA------ATGCT-----------------------------------A--CTT--TTT--C----CC-A-GGACTTTTATTCATAATTTGATA--TCTCACGTCTATCC-TCTCGCGAATCGTGCAGTACGACACGGTTGGTTGGGCTG-----------------------------------------------------------------------------------------------------------------------------------GTACTTAAAAA----------AAAATAA-----------------------------------------ACAATAAAATAAA--ACAAC----ATGCTATATTCTTSizeHit CountTotal NormTotal
No Reads
droRho1
TTTTCCTGTAATATCAAA-----------------TC-----TT--GACTCTCTG--CCG---------------------------CTCC------------TAAAACGATTGATA-CTTGCT-TCAT-TGGC-----------------------------ACAAGATT-GATCTAACTATT-----------------------------A--CTTTTTTC-------CCCG-G-ACCTTTACCTTTATTTTCCTA--TCTCGCGTCTATCT-TATCGCGAAAAAAAAAGAAAA--AAAA--GGAAGCAAATTTCGG---------------------------------------------------------------------------------------------------------------------------------CAAGCCGACGTTTATATACTTGCAGTTATTACAAAACGACTACATTTCGATTTTTATGTCTGTATTACTAAAAACAATGAAGCAATGTCGAT--TTGGCGCTGSizeHit CountTotal NormTotal
No Reads
droFic1
ATA--------------G-----------------TCAGAACGTAATACTCTGTA--AGGATCATGT--------------------------------------TAGCGATCACTT-CTAACC-TTCT-AAGC-----------------------------ACATAACTAGATCTAAT-----------------------TGTGTTCT-TC--CTCATTTT--C----CT-C-GGT-CTCTACTT--ATTTTCCTC--AATCGCGACTCTTT-TCTCGCGAACCGAGCCGTACGATACAC--GGCAGCGCCCCTTGGTCGG--------------------------------------------------------------------------CATATAAGCATATTTTTTTTA-GT---ATATTTTAGTATT-----------TT-----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TTACGG-----------ATTACAACCG--------------------CCTCTCTG--TT-ATTATTATTCGTAGTGATAACCCTTCTATAT------------TAAAAACTTTATTA-CTTGTA------------------------------------------GAGTTAGCTCGT------AGTGTAGCACCG----------------------------------------T-AGTCTAATTT-----TCATTC--TAACCCGTCTATCTAGTTCGCGATTCGTGCCGTACGTCACAC--GGCTGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
GTTCGG-----------ACTAAAATGGTCTCTACC--------------------AC---ATCTTGTCACCT-----------TTCT----CTACTAACAATCTTAAATCGCTTATA-TTAACCG-CCT-TATC-----------------------------AGTGCA-----------------ATACTCTTTCTCGTGA------TATCTTTC------------------------------------TCCTACT--TTTCGCTTAACTAT-TTCCGCGATTCGAGCCGTACGTCACGC--GGCAGCGTCCCTCTGTGGGCTG----------------------------------------------------AACGTATGCCGTGGGAACCGCGCAAAAAAAATATTCTTCAAAC---CCATATTCCTCAG-----------TCCGCAAAAATCTGTATGGTTCTACCCATTAT--------------------------------------------------AAAA----CT--CATAGACCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................CTTTCTCGTGA------TATCTTTC------------------------------------TCC.........................................................................................................................................................................................................................................................................................................22120.081010000
.................................................................................................................................................................................................................................................................................AT-TTCCGCGATTCGAGCCGTACGT..............................................................................................................................................................................................................................................................24130.081010000
...........................................................................................................................................................................................................................................................................................ATTCGAGCCGTACGTCACGC--GGCAGC.................................................................................................................................................................................................................................................26200.051000001
.........................................................................................................AAATCGCTTATA-TTAACCG-CC........................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
droBip1
TTC-GA-----------ACTACAATGCTCTCTACT--------------------CT---ATTACAT-------------------------------------------CTCTTTC-CTGA-CCCT-CTA-AC-----------------------------TTAAAATA-----------------TAGAATTT---TA--AATTTCC--TTAC--TAACTC-------CT-CTT-AGCT-TAATT----GTTAATA--AATAAC-----------------------------------------------------------------------------------------------------------------------------------------------------TTA-AT---ATATTCTAACA---------------------------------------------------------------------------------------------------------------AATCGSizeHit CountTotal NormTotal
No Reads
dp5
CGG--------------ATTATAATTCCCTCTACT-----------------------CT---------------------------CTTA------------TTAAATAACTAATC-CTTACAC-ACC-T----------------------------------------------TTCTAGTAATTAGTAATTGTTGTGG------TATTTGTA--TTTTGA-------TT-GCA-TGCTTAGTTT----CTTAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTTAGCGCTAAT----TT--TTCTCGAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................TC-CTTACAC-ACC-T----------------------------------------------TTCTAGTAATT............................................................................................................................................................................................................................................................................................................................................................................24201.803603600000000
........................................................................................................................................................................................AATTAGTAATTGTTGTGG------TA......................................................................................................................................................................................................................................................................................................................................................2030.3310100000000
.........................TCCCTCTACT-----------------------CT---------------------------CTTA------------TTAAATAACTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2730.3310100000000
.........................TCCCTCTACT-----------------------CT---------------------------CTTA------------TTAAATAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.3310100000000
..........................................................................................................................................................................................TTAGTAATTGTTGTGG------TATTT...................................................................................................................................................................................................................................................................................................................................................2130.3310100000000
...............................................................................................................................................................................................AATTGTTGTGG------TATTTGTA--TTTTGA-------TT-..............................................................................................................................................................................................................................................................................................................................2730.3310000100000
.................................................................................................................................................................................................TTGTTGTGG------TATTTGTA--TTTTGA-------TT-..............................................................................................................................................................................................................................................................................................................................2530.3310100000000
........................................................................................................................................................................................................GG------TATTTGTA--TTTTGA-------TT-GCA-TG........................................................................................................................................................................................................................................................................................................................23200.2550000000410
..................................................................................................................................................................................................................................................TAGTTT----CTTAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTTAGCGC.....................2350.2010000000100
.....................................................................................................................................................................................................TGTGG------TATTTGTA--TTTTGA-------TT-GCA-TG........................................................................................................................................................................................................................................................................................................................2650.2010000000010
.....................................................................................................................................................................................................TGTGG------TATTTGTA--TTTTGA-------TT-GCA-T.........................................................................................................................................................................................................................................................................................................................2550.2010000000010
..................................................................................................................................................................................................................................................TAGTTT----CTTAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTTAGCG......................2260.1710100000000
...................................................................................................................................................................................................................................................AGTTT----CTTAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTTAGCG......................2160.1710100000000
.......................................................................................................................................................................................................TGG------TATTTGTA--TTTTGA-------TT-GC............................................................................................................................................................................................................................................................................................................................21200.1530000000300
CGG--------------ATTATAATTCCCTCTACT-----------------------G.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2280.1310000000100
....................................................................................................................................................................................................................TGTA--TTTTGA-------TT-GCA-TG........................................................................................................................................................................................................................................................................................................................17200.1020000000200
....................................................................................................................C-CTTACAC-ACC-T----------------------------------------------TTCTAGTAATT............................................................................................................................................................................................................................................................................................................................................................................23200.1020200000000
...............................................................................................................CTAATC-CTTACAC-ACC-T----------------------------------------------TTCTAGTAA..............................................................................................................................................................................................................................................................................................................................................................................26200.1020200000000
...................................................................................................................TC-CTTACAC-ACC-T----------------------------------------------TTCTAGTAAA.............................................................................................................................................................................................................................................................................................................................................................................23200.1020200000000
.....................................................................................................................................................................................................................GTA--TTTTGA-------TT-GCA-TGCTTAG...................................................................................................................................................................................................................................................................................................................21200.0510100000000
........................................................................................................................................................................................................................................T-GCA-TGCTTAGTTT----CTTAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGT............................24200.0510100000000
...............................................................................................................CTAATC-CTTACAC-ACC-T----------------------------------------------TTCTA..................................................................................................................................................................................................................................................................................................................................................................................22200.0510010000000
..........................................................................................................................................................................................................................TTTTGA-------TT-GCA-TGCTTAGTTT----............................................................................................................................................................................................................................................................................................................21200.0510100000000
....................................................................................................................C-CTTACAC-ACC-T----------------------------------------------TTCTAGTAATTAGTA........................................................................................................................................................................................................................................................................................................................................................................27200.0510100000000
....................................................................................................................C-CTTACAC-ACC-T----------------------------------------------TTCTAGTAA..............................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
...............................................................................................................CTAATC-CTTACAC-ACC-T----------------------------------------------TTCT...................................................................................................................................................................................................................................................................................................................................................................................21200.0510010000000
...............................................................................................................CTAATC-CTTACAC-ACC-T----------------------------------------------TTC....................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
...............................................................................................................CTAATC-CTTACAC-ACC-T----------------------------------------------TTCTAGT................................................................................................................................................................................................................................................................................................................................................................................24200.0510000001000
......................................................................................................................................................................................................................TA--TTTTGA-------TT-GCA-TGCTTAGTTT----C...........................................................................................................................................................................................................................................................................................................24200.0510000001000
droPer2
CGG--------------ATTATAATTCCCTCTACC--------------------AT---ATCATATCCACCACTAATTGTCTTCCTCTTA------------TTAAATTACTAATC-CTTACAC-ACC-T----------------------------------------------TTCTAGTAATTAATAATTGTTGTGG------TATTTTTA--TTTTTA---------------------------------TG--CAGTAATTGCATCG-CCTCTTGAAAGATGC-GGTCATTGCAT--GTCAACGTCCACAAA---------------------------------------------------------------------------------------------------------------------------------------------------TATACAAATTCGGGAATTTG-------------------------------------------CTTAC----TT--TTTGGTTTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................................................................................................TGC-GGTCATTGCAT--GTCAACGTC..............................................................................................................................................................................................................................................2320.501010000
..................................................................................................................................................................................................................................................................................................C-GGTCATTGCAT--GTCAACGTC..............................................................................................................................................................................................................................................2120.501010000
...............................TACC--------------------AT---ATCATATCCACCACTAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
droWil2
GCTCTG-----------ATTACAATCTTCTATCCC-----------------CTGTA---ATCGGCTCAGAG-----------TTTT----CTATTAATATGCTTAAAACATCTATC-CTATCCC-TTT-TAGT-----------------------------TAATAGCTAGCTATAGT------------------ATAA------TGTGTTTG------------------------TCT----G----TCTTTTC--TATTGTGTATTTTGTCCACGCGATTCGTGCCGTGCGTTATAC--GGCTTTTTTA-------------------------------------------------------------------TTATTTTTTAAA----------------------TTA-AA---ATCTCCCAGAATAACGAGCAAGTCTTTGTC-A----------GAGAGAT-----------------------------------------ATGAGGAAATAAG------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..TCTG-----------ATTACAATCTTCTATCCC-----------------CTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25201.0020020000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAGCAAGTCTTTGTC-A----------GAGAGA...............................................................................25200.40800080
..................................................................................................TATGCTTAAAACATCTATC-CTATCCC-..........................................................................................................................................................................................................................................................................................................................................................................................................................................26200.35707000
........................................................................................................................................................................................................................................................................................GCGATTCGTGCCGTGCGTTATAC--G......................................................................................................................................................................................................................................................24200.25504010
.......................................................................................................................................................................................................................................................................................CGCGATTCGTGCCGTGCGTTATAC--G......................................................................................................................................................................................................................................................25200.15303000
..........................TTCTATCCC-----------------CTGTA---ATCGGCTCAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.15303000
.........................................................................................................................................................................................................................................................................GTGTATTTTGTCCACGCGATTCGTGCC....................................................................................................................................................................................................................................................................27200.10220000
......................................................................................................................................................................................................................TG------------------------TCT----G----TCTTTTC--TATTGTGT...........................................................................................................................................................................................................................................................................................21200.10200011
..............................ATCCC-----------------CTGTA---ATCGGCTCAGAG-----------TTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.10202000
...CTG-----------ATTACAATCTTCTATCCC-----------------CT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100010
..........................TTCTATCCC-----------------CTGTA---ATCGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000
..............................ATCCC-----------------CTGTA---ATCGGCTCAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100001
.............................................................TCGGCTCAGAG-----------TTTT----CTATTAATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
........................TCTTCTATCCC-----------------CTGTA---ATCGGCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000
................................................................................................................................................................................................................................................TCT----G----TCTTTTC--TATTGTGTATTTTG.....................................................................................................................................................................................................................................................................................25200.05101000
.......................................................................................................................................................................................................................................................................................CGCGATTCGTGCCGTGCGTTATAC--.......................................................................................................................................................................................................................................................24200.05100100
..............................................................................................................................................................................................................................................................TTTTC--TATTGTGTATTTTGTCCA.................................................................................................................................................................................................................................................................................23200.05100010
...CTG-----------ATTACAATCTTCTATCCC-----------------CTGTA---AT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05101000
........................................................................................................................................................................................................................................................................TGTGTATTTTGTCCACGCGATTCGTGCCG...................................................................................................................................................................................................................................................................29200.05101000
......................AATCTTCTATCCC-----------------CTGTA---ATCGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
......................................................................................................................................................................................................................................................................................ACGCGATTCGTGCCGTGCGT..............................................................................................................................................................................................................................................................20200.05100010
.............................................................TCGGCTCAGAG-----------TTTT----CTATTAATATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100010
..TCTG-----------ATTACAATCTTCTATCCC-----------------CTGTA---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
................................................................................................................................................................................................................................................................TTC--TATTGTGTATTTTGTCCA.................................................................................................................................................................................................................................................................................21200.05101000
..................................................................................................................................................................................................................................................................................GTCCACGCGATTCGTGCCGT..................................................................................................................................................................................................................................................................20200.05101000
...........................................................................................................................................................................................................................................................................GTATTTTGTCCACGCGATTCGTGCCG...................................................................................................................................................................................................................................................................26200.05101000
...........................TCTATCCC-----------------CTGTA---ATCGGCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05110000
........................................................................................................................................................................................................................................................................................GCGATTCGTGCCGTGCGTTAT...........................................................................................................................................................................................................................................................21200.05101000
...............................................................................................................................................................................................................................................................................TTTGTCCACGCGATTCGTGCC....................................................................................................................................................................................................................................................................21200.05100001
...................................................................................................ATGCTTAAAACATCTATC-CTATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000
..............................................................................................................................................................................................................................................................................TTTTGTCCACGCGATTCGTGC.....................................................................................................................................................................................................................................................................21200.05101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAAGTCTTTGTC-A----------GAGA.................................................................................20200.05100100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAGCAAGTCTTTGTC-A----------GAGAG................................................................................24200.05101000
....................................................................AGAG-----------TTTT----CTATTAATATGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
.........................................................................................................................................................................................................................................................................................CGATTCGTGCCGTGCGTTATAC--G......................................................................................................................................................................................................................................................23200.05101000
...................................................................................................................................................................................................................................................................................TCCACGCGATTCGTGCCGTG.................................................................................................................................................................................................................................................................20200.05100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTCTTTGTC-A----------GAGAGAT-----------------------------------------ATGAGG...............................26200.05100010
droVir3
GTGATG-----------ACTATAACAAGCATTA---C-----AG--AGCATTCTG--CCC---------------------------TTCCTTGTT-------TAAAGTCTTTTATT-CTAAACT-ATT-TAAC-----------------------------AAGTAGATATTTTTATT-----------------TGTAATTG---TATTTTTA--CACATACTTGTAGCTTG-T-A-TCGATTTT----TTTTACTATTTTTTTGATTTTTA-CTTTGCATTTCGTGTCGAACGTTACAT--GACTGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................TTGCATTTCGTGTCGAACGTTACAT--G......................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000001000000000000000000000000
droMoj3
TAT--------------A-----------------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAACATATCCTT--ATTTTTTTTTTATAGATAT-----------TTAGAAAG----------GAAAGAT-----------------------------------------ATGATAAAATACGGAATAGT----AT--TTTGAGCGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................TCCTT--ATTTTTTTTTTATAG......................................................................................................................2011.001100000
droGri2
ATATAA-----------TATAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAC--TCATATACTTCCGTT---GCATTTTAGATTT-----------TTCGCAAG----------GAACGAT-----------------------------------------ATGATAAAATACGCAACAGT----AT--TTTGGGCGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 01:14 PM