ID:

dsi_20720

 Coordinate:

3r:15688575-15688724 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.4 -27.3 -27.3

Flybase annnotation

exon [3r_15688725_15689024_+]; five_prime_UTR [3r_15688725_15688885_+]; intron [3r_15688388_15688724_+]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
mature
  1. 2l:1564251-1564267 +
  2. 2r:4627314-4627330 +
  3. 2r:7291127-7291143 +
  4. 2r:15755160-15755176 +
  5. 3l:3142571-3142587 +
  6. 3l:3323806-3323822 +
  7. 3l:13605396-13605412 +
  8. 3r:13334396-13334412 +
  9. dsi_20720  3r:15688603-15688619 +
  10. 3r:18615750-18615766 +
  11. x:1342583-1342599 +
  12. x:2528696-2528712 +
  13. x:6966332-6966348 +
  14. x:8204711-8204727 +
  15. x:10395031-10395047 +
  16. x:10565300-10565316 +
  17. x:18150027-18150043 +
  18. x:18503034-18503050 +
  19. x:18624571-18624587 +
  20. node_39788:16432-16448 +
star

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATTTTAGTTTGAGTCATTGATCTCTTTTTCCCATTCTTTTTTTTGTGCTGCCCGTCTGGCTGTGTACATGCAGTGGTGCGTGTGTGTGTGTGTGTGCAAGCGCCTAGTCGCAGTGACTCAGTGACGTGCATTAATTCCTGCCTAATTATGCGTTTAATTTATTTTAATCAATCTTAATTAATAATTTACTCCACTTGCAGCCCATACACGCACACTCACCCACACAAACACACGCAACAAGCGTACGGAG
**************************************************.((....)).....((((((((....))))))))..........(((((((((.((((.((((.((...((((.....))))...))))))...)))).)))..(((.(((((((((......))))..))))).))).....)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553487
NRT_0-2 hours eggs
...................................................................................................................ACTCAGTGACGTCCATTCCTT.................................................................................................................. 21 3 1 1.00 1 0 0 1 0 0 0
..............................................................................................................CGGTGACTCAGTGACGTGCAT....................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...................................................CCGTCTGGCTGTGAAGATGCAGT................................................................................................................................................................................ 23 2 1 1.00 1 0 1 0 0 0 0
.......................................................................................................................AGTGACGTGCATTAATTCCTGT............................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................ATACACGCACACTCACCCACA.......................... 21 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................GTGTGTTCAAGCGTCAAGTC............................................................................................................................................. 20 3 6 0.50 3 0 0 0 0 3 0
...............................................................................................................GTTGACTCAGTGACGTCCATT...................................................................................................................... 21 3 2 0.50 1 0 0 0 1 0 0
..............................................................................................................CGTTGACTCAGTGACGTCCAT....................................................................................................................... 21 3 3 0.33 1 0 0 0 1 0 0
.............................................................................................................GCAGAGACTCAGTGA.............................................................................................................................. 15 1 8 0.25 2 0 0 1 1 0 0
ATTTTAGTCTGAGTCAGT........................................................................................................................................................................................................................................ 18 2 4 0.25 1 0 1 0 0 0 0
......................................................................................................CTTAGTCGGAGTGACTCCG................................................................................................................................. 19 3 7 0.14 1 0 0 1 0 0 0
.............................................TGATGCCCGTCTGGC.............................................................................................................................................................................................. 15 1 14 0.07 1 0 1 0 0 0 0
.................................................................................................................TGATTCAGTGACGTCC......................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1
..............................................................................CGTGTGTGTGTGTGTGT........................................................................................................................................................... 17 0 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

TAAAATCAAACTCAGTAACTAGAGAAAAAGGGTAAGAAAAAAAACACGACGGGCAGACCGACACATGTACGTCACCACGCACACACACACACACACGTTCGCGGATCAGCGTCACTGAGTCACTGCACGTAATTAAGGACGGATTAATACGCAAATTAAATAAAATTAGTTAGAATTAATTATTAAATGAGGTGAACGTCGGGTATGTGCGTGTGAGTGGGTGTGTTTGTGTGCGTTGTTCGCATGCCTC
**************************************************.((....)).....((((((((....))))))))..........(((((((((.((((.((((.((...((((.....))))...))))))...)))).)))..(((.(((((((((......))))..))))).))).....)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 M053
female body
 SRR1275487
Male larvae		 SRR618934
dsim w501 ovaries
 O001
Testis
 SRR553488
RT_0-2 hours eggs
..................................................GGGCAGGCCGACAGATCTAC.................................................................................................................................................................................... 20 3 5 73.80 369 262 52 53 0 0 0 0 0 0 1 1 0 0 0
..................................................GGGCAGGCCGACAGATCTA..................................................................................................................................................................................... 19 3 14 21.21 297 214 56 27 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGCAGGCCGACACATCTAC.................................................................................................................................................................................... 20 3 3 2.33 7 6 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GGGTATGTGCGTGTCAGTGGGT............................ 22 1 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0
...................................................................................................................TGAGTCACTGCAGGTA....................................................................................................................... 16 1 2 1.50 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CTGAGTCACTGCAGGTAAG..................................................................................................................... 19 2 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TGAGTCACTGCAGGTAA...................................................................................................................... 17 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TGAGGTGAACGTCGGGTAAGT.......................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGGGTGTGTTTGTGTGCGTTGT........... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................AACTAGAGAAAAAGGGTAA....................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................GGTAACTGAGTCACTGCAGGT........................................................................................................................ 21 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................GATGGGCAGGCCGAGACATGT...................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................CGGCAGGCCGACACATCTAC.................................................................................................................................................................................... 20 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGCAGGCCGACAGATGTAC.................................................................................................................................................................................... 20 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................TGGCAGGCCGACACATCTA..................................................................................................................................................................................... 19 3 6 0.33 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................AAATAGAATTAGATTGAATTAAT...................................................................... 23 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................TTAAAGCAGGTGTACGTCGGG............................................... 21 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................AAAAAAACATGATGGGCATAC................................................................................................................................................................................................ 21 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................GGGCAGGCCGACATATCTAC.................................................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................GGTCAGCGTCGCTGAGTCAA............................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................TGGCAGGCCGACAGATGTA..................................................................................................................................................................................... 19 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GGGCAGTCCGACAGATCTA..................................................................................................................................................................................... 19 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TGTGTCTGTGTGCGTTGT........... 18 1 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
........ATGTCAGTAACTAGAGAGA............................................................................................................................................................................................................................... 19 3 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................GGCAGGCCGACATATCTAC.................................................................................................................................................................................... 19 3 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
TAAAGTCAAAATCAGTAACAA..................................................................................................................................................................................................................................... 21 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................AAAATTAGTTAGACATAAT...................................................................... 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................ACCACGCACACACACACACC............................................................................................................................................................. 20 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................CAGGCCGACACATCTACTT.................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................AGAGAAAGAGGGTAAAAA.................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:15688525-15688774 + dsi_20720 ATTT--T-------------------AG-TTTGAGTCATTGATCTCTT-----TT-TCCCATTCTTTTTT-TTGT-----------------------GCTGCCCGTCTGG--------CT--------------------GTGTACATGCAGTGGTGCGTGTGT--------GTGT---GTGTGTGCA--------AGCGC--------------------CT------AGTCGCA-GTGACTCAGTGACGTGCATTAATTCCTGCCTAATTATG--CGTTTAATTTATTTTAATCAATCTTAATTAATAAT---TT------------A----------------------CTCCACTTGCAGCCCA-T---------------------ACA----CGCACACT------------------CACCC----------ACACAAA--------CACACG--CA---ACAAGC--GTACGGA----G
droSec2 scaffold_0:16558565-16558811 + ATTT--T-------------------AG-TTTGAGTCATTGATCTCTT-----TT-CCCCATTCTTTTTTTTTGT-----------------------GCTGCCCGTCTGG--------CT--------------------GTGTGCATGCAGTGGTGCGTGTGT--------GTGT---------GTG--C----AAGCAC--------------------CT------AGTCGCA-GTGACTCAGTGACGTGCATTAATTCCTGCCTAATTATG--CGTTTAATTTATTTTAATCAATCTTAATTAATAAT---TT------------A----------------------CTCCACTTGCAGCCCA-T---------------------ACA----CGCACACT------------------CACCC----------ACACAAT--------CACACG--CA---ACAAGC--GTACGGA----G
dm3 chr3R:5338125-5338372 - ATTT--T-------------------AG-TTTGAGTCATTGATCTCTT-----TT-TCCCATTTTTTT---TTGT-----------------------GTTGCCCGTCTGG--------CT--------------------GTGTGCATGCAGTGGTGCGTGTGT--------GTTT---GTGCGAGTA--------AGCGC--------------------CT------AGTCACA-GTGACTCAGTGACGTGCATTAATTCCTGCCTAATTATG--CGTTTAATTTATTTTAATCAATCTTAATTAATAAT---TT------------A----------------------CTCCACTTGCAGCCCA-T---------------------ACA----CGCACAGT------------------CACCC----------ACACAAA--------CACACG--CA---ACAAGC--GTACGGA----G
droEre2 scaffold_4770:16262623-16262870 + ATTT--T-------------------AG-TTTGAGTCATTGATCTCTT-----TC-TCCCATTTTTTTTT----T-----------------------GTTGCCTGTCTGG--------CT--------------------GTGTGCATGCAGTGGTGCGTGCGT--------GTGT---GTGAGAGTG--------AGCGC--------------------CT------GGTCGCA-GTGACTCAGTGACGTGCATTAATTCCTGCCTAATTATG--CCTTTAATTTATTTTAATCAATCTTAATTAATAAT---TT------------A----------------------CTCCACTTGCAGCCCA-T---------------------ACA----CGCACACT------------------CACCC----------ACACAAA--------CACACG--CAC--ACAAGC--GTACGGA----G
droYak3 3R:9388305-9388553 - ATTT--T-------------------AG-TTTGAGTCATTGATCTCTT-----TTTTCCCATTTTTTTTT----T-----------------------GTTGCCCGTCTGG--------CT--------------------GTGTGCATGCAGTGGTGCGTGCGT--------GTGT---GTGCGAGTG--------AGCGC--------------------CT------ATTCGCA-GTGACTCAGTGACGTGCATTAATTCCTGCCTAATTATG--CGTTTAATTTATTTTAATCAATCTTAATTAATAAT---TT------------A----------------------CTCCACTTGCAGCCCA-T---------------------ACA----CGCACACT------------------CACCC----------ACACAAG--------CACACG--CAC--ACTAGC--GTACGGA----G
droEug1 scf7180000407136:355396-355638 + TTTT--T-------------------AG-TTTGAGTCATTGATCACTT-----TT-T----TTCTCTTTT----T--------------------------GCCCGTCTGG--------CT--------------------GTGTGCATGCAGT-------GCGTGT--------GTGCG-----AGTG--------AGAGC---------------------------------CA-GTGACTCAGTGGCGTGCATTAATTCCTGTCTAATTATG--CGTTTAATTTATTTTAATCAATCTTAATTAATAAT---TT------------A----------------------CTCCACTTGCAGCCCA-T---------------------ACA----C--ATAGACAAACATATACACTCACTCACCC----------ACACACA----GA--CACATA--CGA--ACAAGC--GCACGGA----G
droBia1 scf7180000302075:5348209-5348448 - TTTT--C-------------------AG-TTTGAGTCATTGATCTCTTCGCTTT-------------TT--TTCT--------------------------GCCCGTCTGG--------CT--------------------GTGTGCATGCAGT-------GCGTGT--------GTGCG-----AGCGAGCTAGTGAACGC--------------------C-------AGTCGCA-GTGACTCAGTGGCGTGCATTAATTCCTGCCTAATTATG--CCTTTAATTTATTTTAATCAATCTTAATTAATAAT---TT------------A----------------------CTCCACTTGCAGCCCA-T---------------------ACA----CACACACA----------CACACACTCACCC----------A--------------CACACG--CAC--ACAAGC--GCACGGA----G
droTak1 scf7180000415397:449789-450016 + TTTT--T-------------------AG-TTTGAGTCATTGATCTCTTC--T-T------------TTTT-T--C--------------------------GCCCGTCTGG--------CT--------------------GTGTGCATGCAGT-------GCGTGT--------GTGCG-----AGTG--------AGCGC--------------------C-------AGTCGCA-GTGACTCAGTGGCGTGCATTAATTCCTGCCTAATTATG--CCTTTAATTTATTTTAATCAATCTTAATTAATAAT---TT------------A----------------------CTCCACTTGCAGCCCA-T---------------------ACA----C--ACATT------------------CACCC----------ACACACA----CACGCACACA--CA---ACAAGC--GCACGGA----G
droEle1 scf7180000491047:314146-314362 + GTGC--T-------------------AG-TTTGAGTCATTGATCTCTT-----TT-------------------C--------------------------TCCCGTCTGG--------CT--------------------G--TGCATGCAGT-------GCGTGT--------GTGCT-----AGTG--------AGCGC--------------------C-------AGTCGCA-GTGACTCAGTGGCGTGCATTAATTCCTGCCTAATTATG--CCTTTAATTTATTTTAATCAATCTTAATTAATAAT---TT------------A----------------------CTCCATTTGCAGCCCA-T---------------------ACA----C--ACACT------------------CACCC----------CCACACA----------CACT--CAC--ACAAACGTGAACGGA----G
droRho1 scf7180000777865:105639-105847 - GTTC--G-------------------AG-TTTGAGTCATTGATCTCTT-----TT-------------------T--------------------------GTCCGTCTGG--------CT--------------------GTGTGCATGCAGT-------GCGTGT--------GTGCT-----AGTG--CTAGTAAGCGC--------------------C-------AGTCAC---------AGTGACGTGCATTAATTCCTGCCTAATTATG--CCTTTAATTTATTTTAATCAATCTTAATTAATAAT---TT------------A----------------------CTCCACTTGCAGCCCA-T---------------------ACA----C--ACACT------------------CACCC----------ACACAAA--------CACAC------------GC--GCGCGGA----G
droFic1 scf7180000453912:1654566-1654781 - ATTT-TA-------------------AG-TTTGAGTCATTGATCTCTT-----C-----------------------------------------------GCCCGTCTGG--------CT--------------------GTGTGCATGCAGT-------GCGTGT--------GTGCG-----AGTG--------AGCAG---------------------T------ACTCGAA-GTGACTCAGTGGCCTGCATTAATTCCTGGCTAATTATG--CGCTTAATTTATTTTAATCAACCTTAATTAATAAT---TT------------A----------------------CTCCACTTGCAGCCCA-T---------------------ACA----CACACACA--------CACGCT----CACCC----------------------------ACC--CAC--ACACGC--GCACGGA----G
droKik1 scf7180000302387:382637-382852 - GGCC--T---------------GCAGCACTTTGAGTCATTGATCTCTT-----TG-----------------------------------------------------TGG--------C-------------------CTGTGTGCGTGC-GT-------GCGCGT--------GTGTG-----AGTG--------AGCAC--------------------C-------ATCCGAA-GTGACTCAG-----TGCATTAATTCGTGCCTAATTATG--CGTTTAATTTATTTTAATCAATCTTAATTAATAAT---TT------------A----------------------CTCTACTTGCAGCCCG-----------------------ACTCA--CACACACA------------------C----------------ACACACACCCA--TATACT--G----ATAAAG--GCACGGACACGG
droAna3 scaffold_13340:23371624-23371859 - ATTCTTT-------------------AC-TTTGAGTCATTGATCTCTT-----TT-------------T--TTGT--------------------------GTGCGTATGT--------GC--------------------GTGTGCATGGAAT-------GTGTGT--------GTG-------ACTA--------TGCAC--------------------C----------CGAT-GTGACTCAGTGACGTGCATTTATTCCTGCATAATTATG--CCTTTAATTCATTTTAATTAATCTTAATTAATAAT---TT------------A----------------------CTTCACTTGCAGCCCA-G---------------------ACACACACGCACACT------------------CACCCCGCAAGCGCCACACACA--------CACACA--GAT--ACAAAT--AACCGGA----G
droBip1 scf7180000396395:374640-374865 - ACTT--T-------------------AG-TTTGAGTCATTGATCTCTT-----TT-----------------TGT--------------------------GTGCGTATGT--------GC--------------------GTGTGCATAGCAT-------GTGTGT--------GTGTG-----ACTA--------TGC------------------------------ATCCGAA-GTGACTCAGTGACGTGCATTTATTCCTGCATAATTATG--CCTTTAATTCATTTTAATCAATCTTAATTAATAAT---TT------------A----------------------CTTCACTTGCAGCCCA-G---------------------ACACA--CGCACGCT------------------CACTC-ACAAGCC-----CCAC--------CACAGA--TAC--AGATAC--AGACCCG----G
dp5 2:22240509-22240635 + GATT--C-------------------AG-T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGCATTAATTTGTGCCTAATTATG--CGTTTAATTTATTTTAATCATTTTTAATTATTAAT---TT------------A----------------------CTTTACTTGCAGCCCTGC---------------------GGA----GACATAGA------------------CATCC----------AGACA-C--------CACACG--CACCCCCAA----------------
droPer2 scaffold_3:5021679-5021803 + GATT--C-------------------AG-T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGCATTAATTTGTGCCTAATTATG--CGTTTAATTTATTTTAATCATTTTTAATTATTAAT---TT------------A----------------------CTTTACTTGCAGCCCTGC---------------------GGA----GACATAGA------------------TATCC----------AGACA-C--------CACACG--CA--------------CCCC----G
droWil2 scf2_1100000004943:4621583-4621783 + ------------------------------TTGAGTCATTGATCTCTT-----TTTTCTTATTTTTTTTT-TTGTGTTCGTTTCTTATGCGCTCTTC----TCTTGTGTCG----CTGGTT--------------------GTT-----------------TTGTGT--------GT-------------------------------------------------------------GTGACTCAGTA-------------TCTAACTAATTACACTCTTTTAATTCATTTTAATCATTTTTAATTAAT--------------------------------------------TCTACTTTAAGATAC-T---------------------GCA----ACTGCTGT------------------GACGG----------ACACAGA--------G------------AGGAAG--CTACAAA----G
droVir3 scaffold_13047:4178759-4179069 + AATT--TGCGA--ACGGTCTGTGCAACG-CTTGAGTCATTGTCATCTCT--C-C-------------------------------------------------CTCTCTGGTTGTATGAGT--------------------GCGTGCATGT-GT-------TCGTGT----ATGTG---------TGTG--------AGCGGTAAAGAAAAA-TATATAAACCCGTACGCAGTCAAAAACTACTC--TCACTCACATTAATTTATACCTAATTATG--CGCTTAATTAATTTTAATCATTTTTAATTAATAATAATTTGCGTACAA--CTA-----CTTGCAGTTGCCGCAATCTTCAGTTGCAGCTCT-A-CTTTTTGAGTGGGGCGGGGAACA----CGCACA----------------------CCA----------ATACAAC--------CACAC----A---ACCAGC--ACACCCA----C
droMoj3 scaffold_6540:22168757-22169055 - G----------------------------CTTGAGTCATTATAATTCCC--C-TC----------------------------------------------TCTTGTGCGG----ATAAGT--------------------GCGTGCA---AGT-------GTGTGCGTGAATGTGT---GT----------------GCGGCAAAGAAAAA-TATATAAACTCGATCGCAGTCAAATACTACTC--TGAC--TCATTAATTTATGACTAATTATA--CGCTTAATTAATTTCAATCATTTTTAATTAATAATGCTTTGTGTATAT--CTGCTTTTCTTGCAGTCGCCACAATCTTCAGTTGCAGCTCT-CATTTTTTGAGTGGGGCGAGGAACT----CACACGCA------------------CACCA----------ATACAAG--------CACACGCGCCA--ACAAGC--CCACACA-----
droGri2 scaffold_14906:9676556-9676901 + GCTC--G-CGATGAGTGTCTGTGCAACG-CTTGAGTCATTGTCATCTCA--T-TC-TC-------------TCGC---------------GCTTCCCCGT----TGTATGC--------CTGCGTGCAAGTGTTCGTGATTGTGT------------GCGTGCGT--------GCGT---GTGTATGTG--------AGCGGCAACGAAAAAGTACAAAAA---GCCTGCAGTCAAA-GCGACTC--TGACTCACATTAATTTATGCCTAATTATG--AGCTTTATTCATTTTAATCATTTTTAATTAAAAATAATTTGTCTACAGCTCTCCTTTATTTGCAGTCGCCACAATCTTCAGTTGCAGCTCT-CAT--TTTGAATTGGGCGAGGAACATACAC--ACACT------------------CAGAC------------ACAAACA--CACACACAC------------AC--ACACCAA----T

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATTT--T-------------------AG-TTTGAGTCATTGATCTCTT-----TT-TCCCATTCTTTTTT-TTGT-----------------------GCTGCCCGTCTGG--------CT--------------------GTGTACATGCAGTGGTGCGTGTGT--------GTGT---GTGTGTGCA--------AGCGC--------------------CT------AGTCGCA-GTGACTCAGTGACGTGCATTAATTCCTGCCTAATTATG--CGTTTAATTTATTTTAATCAATCTTAATTAATAAT---TT------------A----------------------CTCCACTTGCAGCCCA-T---------------------ACA----CGCACACT------------------CACCC----------ACACAAA--------CACACG--CA---ACAAGC--GTACGGA----GSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................AGTGACGTGCATTAATTCCTGT.............................................................................................................................................................................................................................2211.00100000000000001000
................................................................................................................................................................................................................................................................................................................................................................................A-T---------------------ACA----CGCACACT------------------CACCC----------ACA.............................................2111.00100000000000001000
..............................................................................................................................................................CGTGTGT--------GTGT---GTGTGT..............................................................................................................................................................................................................................................................................................................17200.05100000000001000000
droSec2
ATTT--T-------------------AG-TTTGAGTCATTGATCTCTT-----TT-CCCCATTCTTTTTTTTTGT-----------------------GCTGCCCGTCTGG--------CT--------------------GTGTGCATGCAGTGGTGCGTGTGT--------GTGT---------GTG--C----AAGCAC--------------------CT------AGTCGCA-GTGACTCAGTGACGTGCATTAATTCCTGCCTAATTATG--CGTTTAATTTATTTTAATCAATCTTAATTAATAAT---TT------------A----------------------CTCCACTTGCAGCCCA-T---------------------ACA----CGCACACT------------------CACCC----------ACACAAT--------CACACG--CA---ACAAGC--GTACGGA----GSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................CGTGTGT--------GTGT---------GTG--C----AAGCA...............................................................................................................................................................................................................................................................................................2011.0010001
........................................................................................................................................................GTGGTGCGTGTGT--------GTGT---------GT............................................................................................................................................................................................................................................................................................................1920.5010100
dm3
ATTT--T-------------------AG-TTTGAGTCATTGATCTCTT-----TT-TCCCATTTTTTT---TTGT-----------------------GTTGCCCGTCTGG--------CT--------------------GTGTGCATGCAGTGGTGCGTGTGT--------GTTT---GTGCGAGTA--------AGCGC--------------------CT------AGTCACA-GTGACTCAGTGACGTGCATTAATTCCTGCCTAATTATG--CGTTTAATTTATTTTAATCAATCTTAATTAATAAT---TT------------A----------------------CTCCACTTGCAGCCCA-T---------------------ACA----CGCACAGT------------------CACCC----------ACACAAA--------CACACG--CA---ACAAGC--GTACGGA----GSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................CACA-GTGACTCAGTGACGTGC.........................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000020010
..................................................................................................................................................................................................................................................................................................................................................................................T---------------------ACA----CGCACAGT------------------CACCC----------ACAC............................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................TGCATGCAGTGGTGCGTG......................................................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................T---TTGT-----------------------GTTGCCCGTCTGG--------CT--------------------G..........................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000100000000000000000000000000000000000000000000000000000010
........................................................................................................................T--------------------GTGTGCATGCAGTGGTGCGT.......................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.......................................................................................................................................................AGTGGTGCGTGTGT--------GTTT---G...................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................GTGGTGCGTGTGT--------GTTT---GTGC................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000001000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................CAGT------------------CACCC----------ACACAAA--------CACACG--.........................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................CGTCTGG--------CT--------------------GTGTGCATG..................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
................................................................TTTT---TTGT-----------------------GTTGCCCGTCTGG--------.................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000010000
..........................................................................................................TCTGG--------CT--------------------GTGTGCATGCAGTG.............................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAA--------CACACG--CA---ACAAGC--G...........1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................ATTTTTTT---TTGT-----------------------GTTGCCCGT.............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................GGTGCGTGTGT--------GTTT---GTGCGA..............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................................................................AGCCCA-T---------------------ACA----CGCACAGT------------------CACC...........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................CGTCTGG--------CT--------------------GTGTGCATGCAGT..............................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................TTAATTCCTGCCTAATTATG--C.................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................CACA-GTGACTCAGTGACGTGA.........................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................GTGACGTGCATTAATTCCTGCCT...........................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
..............................................................................................................................................TGTGCATGCAGTGGTGCGTGTT....................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................CATGCAGTGGTGCGTGTGT--------GT.........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
........................................................................................................................T--------------------GTGTGCATGCAGTGGTGCGTT......................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................GTGGTGCGTGTGT--------GTTT---G...................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................AGTGGTGCGTGTGT--------GTTT---GTG.................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................CACAGT------------------CACCC----------ACACAAA--------C................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................GTCTGG--------CT--------------------GTGTGCATGCAG...............................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...................................................................................................................................................................................................................................................................................................................................................................CCACTTGCAGCCCA-T---------------------ACA----CGC......................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................ATTTTTTT---TTGT-----------------------GTTGCCCG..............................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................GTCATTGATCTCTT-----TT-TCCCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................G-TTTGAGTCATTGATCTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ACCC----------ACACAAA--------CACACG--CA---ACAAGC--............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................ACTCAGTGACGTGCATTAATT..................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................CA-T---------------------ACA----CGCACAGT------------------CACCC----------ACACA...........................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................ACA-GTGACTCAGTGACGTGC.........................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.........................................................................................................................................................................................AGTA--------AGCGC--------------------CT------AGTCACA-GTG.......................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................GTA--------AGCGC--------------------CT------AGTCACA-GTGA......................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TGGTGCGTGTGT--------GTTT---GTGCG...............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................GTGCATGCAGTGGTGCGTGTGT--------GT.........................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................AGTGACGTGCATTAATTCCTG..............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................GCAGTGGTGCGTGTGT--------GTTT---GTGCGA..............................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
........................................................................................................................................................................................GAGTA--------AGCGC--------------------CT------AGTCACA-GT........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
......................................................................................................................................................................................GCGAGTA--------AGCGC--------------------CT------AGTCAC............................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.................................................................................................................................................GCATGCAGTGGTGCGTGTGT--------G..........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................CATGCAGTGGTGCGTGTGT--------GTT........................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................GTGACGTGCATTAATTCCTGC.............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGT------------------CACCC----------ACACAAA--------CA...............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................CGTGTGT--------GTTT---GTGCGAGT............................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................ACAGT------------------CACCC----------ACACAAA--------CACACG--.........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................AGCCCA-T---------------------ACA----CGCACAGT------------------CACCC----------A...............................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................CGTCTGG--------CT--------------------GTGTGCATGC.................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.................................................................................................................................................GCATGCAGTGGTGCGTGTGT--------GTTT---GTG.................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
..................................................................................................................................................CATGCAGTGGTGCGTGTGT--------G..........................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................TGTGT--------GTTT---GTGCGAGTA--------AGC................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAA--------CACACG--CA---ACAAGC--G...........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................CTCAGTGACGTGCATTAATTC.................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................TGCGTGTGT--------GTTT---GTGCGAGTA--------AGCGC--------------------..........................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................T-----------------------GTTGCCCGTCTGG--------CT--------------------GTGTG......................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................GCAGTGGTGCGTGTGT--------GTTT---GTG.................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--------CACACG--CA---ACAAGC--GTACGGT----.2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...T--T-------------------AG-TTTGAGTCATTGATCTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................ATAAT---TT------------A----------------------CTCCACTTGCAG...........................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...............................................................................................................................................................................................................................................................................................................................................................................................................CGCACAGT------------------CACCC----------ACACAAA--------CA...............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ATTT--T-------------------AG-TTTGAGTCATTGATCTCTT-----TC-TCCCATTTTTTTTT----T-----------------------GTTGCCTGTCTGG--------CT--------------------GTGTGCATGCAGTGGTGCGTGCGT--------GTGT---GTGAGAGTG--------AGCGC--------------------CT------GGTCGCA-GTGACTCAGTGACGTGCATTAATTCCTGCCTAATTATG--CCTTTAATTTATTTTAATCAATCTTAATTAATAAT---TT------------A----------------------CTCCACTTGCAGCCCA-T---------------------ACA----CGCACACT------------------CACCC----------ACACAAA--------CACACG--CAC--ACAAGC--GTACGGA----GSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................GTGCGTGCGT--------GTGT---GTGAG...............................................................................................................................................................................................................................................................................................................1980.1310001000
droYak3
ATTT--T-------------------AG-TTTGAGTCATTGATCTCTT-----TTTTCCCATTTTTTTTT----T-----------------------GTTGCCCGTCTGG--------CT--------------------GTGTGCATGCAGTGGTGCGTGCGT--------GTGT---GTGCGAGTG--------AGCGC--------------------CT------ATTCGCA-GTGACTCAGTGACGTGCATTAATTCCTGCCTAATTATG--CGTTTAATTTATTTTAATCAATCTTAATTAATAAT---TT------------A----------------------CTCCACTTGCAGCCCA-T---------------------ACA----CGCACACT------------------CACCC----------ACACAAG--------CACACG--CAC--ACTAGC--GTACGGA----GSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................GTTGCCCGTCTGG--------CT--------------------GTGTGC.....................................................................................................................................................................................................................................................................................................................................................2111.00110000000000
................................................................................................................................................................................................................................................................................................................................................................................A-T---------------------ACA----CGCACACT------------------CACCC----------ACACAAG--------CAC..............................2811.00101000000000
droEug1
TTTT--T-------------------AG-TTTGAGTCATTGATCACTT-----TT-T----TTCTCTTTT----T--------------------------GCCCGTCTGG--------CT--------------------GTGTGCATGCAGT-------GCGTGT--------GTGCG-----AGTG--------AGAGC---------------------------------CA-GTGACTCAGTGGCGTGCATTAATTCCTGTCTAATTATG--CGTTTAATTTATTTTAATCAATCTTAATTAATAAT---TT------------A----------------------CTCCACTTGCAGCCCA-T---------------------ACA----C--ATAGACAAACATATACACTCACTCACCC----------ACACACA----GA--CACATA--CGA--ACAAGC--GCACGGA----GSizeHit CountTotal NormTotal
No Reads
droBia1
TTTT--C-------------------AG-TTTGAGTCATTGATCTCTTCGCTTT-------------TT--TTCT--------------------------GCCCGTCTGG--------CT--------------------GTGTGCATGCAGT-------GCGTGT--------GTGCG-----AGCGAGCTAGTGAACGC--------------------C-------AGTCGCA-GTGACTCAGTGGCGTGCATTAATTCCTGCCTAATTATG--CCTTTAATTTATTTTAATCAATCTTAATTAATAAT---TT------------A----------------------CTCCACTTGCAGCCCA-T---------------------ACA----CACACACA----------CACACACTCACCC----------A--------------CACACG--CAC--ACAAGC--GCACGGA----GSizeHit CountTotal NormTotal
No Reads
droTak1
TTTT--T-------------------AG-TTTGAGTCATTGATCTCTTC--T-T------------TTTT-T--C--------------------------GCCCGTCTGG--------CT--------------------GTGTGCATGCAGT-------GCGTGT--------GTGCG-----AGTG--------AGCGC--------------------C-------AGTCGCA-GTGACTCAGTGGCGTGCATTAATTCCTGCCTAATTATG--CCTTTAATTTATTTTAATCAATCTTAATTAATAAT---TT------------A----------------------CTCCACTTGCAGCCCA-T---------------------ACA----C--ACATT------------------CACCC----------ACACACA----CACGCACACA--CA---ACAAGC--GCACGGA----GSizeHit CountTotal NormTotal
No Reads
droEle1
GTGC--T-------------------AG-TTTGAGTCATTGATCTCTT-----TT-------------------C--------------------------TCCCGTCTGG--------CT--------------------G--TGCATGCAGT-------GCGTGT--------GTGCT-----AGTG--------AGCGC--------------------C-------AGTCGCA-GTGACTCAGTGGCGTGCATTAATTCCTGCCTAATTATG--CCTTTAATTTATTTTAATCAATCTTAATTAATAAT---TT------------A----------------------CTCCATTTGCAGCCCA-T---------------------ACA----C--ACACT------------------CACCC----------CCACACA----------CACT--CAC--ACAAACGTGAACGGA----GSizeHit CountTotal NormTotal
No Reads
droRho1
GTTC--G-------------------AG-TTTGAGTCATTGATCTCTT-----TT-------------------T--------------------------GTCCGTCTGG--------CT--------------------GTGTGCATGCAGT-------GCGTGT--------GTGCT-----AGTG--CTAGTAAGCGC--------------------C-------AGTCAC---------AGTGACGTGCATTAATTCCTGCCTAATTATG--CCTTTAATTTATTTTAATCAATCTTAATTAATAAT---TT------------A----------------------CTCCACTTGCAGCCCA-T---------------------ACA----C--ACACT------------------CACCC----------ACACAAA--------CACAC------------GC--GCGCGGA----GSizeHit CountTotal NormTotal
No Reads
droFic1
ATTT-TA-------------------AG-TTTGAGTCATTGATCTCTT-----C-----------------------------------------------GCCCGTCTGG--------CT--------------------GTGTGCATGCAGT-------GCGTGT--------GTGCG-----AGTG--------AGCAG---------------------T------ACTCGAA-GTGACTCAGTGGCCTGCATTAATTCCTGGCTAATTATG--CGCTTAATTTATTTTAATCAACCTTAATTAATAAT---TT------------A----------------------CTCCACTTGCAGCCCA-T---------------------ACA----CACACACA--------CACGCT----CACCC----------------------------ACC--CAC--ACACGC--GCACGGA----GSizeHit CountTotal NormTotal
No Reads
droKik1
GGCC--T---------------GCAGCACTTTGAGTCATTGATCTCTT-----TG-----------------------------------------------------TGG--------C-------------------CTGTGTGCGTGC-GT-------GCGCGT--------GTGTG-----AGTG--------AGCAC--------------------C-------ATCCGAA-GTGACTCAG-----TGCATTAATTCGTGCCTAATTATG--CGTTTAATTTATTTTAATCAATCTTAATTAATAAT---TT------------A----------------------CTCTACTTGCAGCCCG-----------------------ACTCA--CACACACA------------------C----------------ACACACACCCA--TATACT--G----ATAAAG--GCACGGACACGGSizeHit CountTotal NormTotal
No Reads
droAna3
ATTCTTT-------------------AC-TTTGAGTCATTGATCTCTT-----TT-------------T--TTGT--------------------------GTGCGTATGT--------GC--------------------GTGTGCATGGAAT-------GTGTGT--------GTG-------ACTA--------TGCAC--------------------C----------CGAT-GTGACTCAGTGACGTGCATTTATTCCTGCATAATTATG--CCTTTAATTCATTTTAATTAATCTTAATTAATAAT---TT------------A----------------------CTTCACTTGCAGCCCA-G---------------------ACACACACGCACACT------------------CACCCCGCAAGCGCCACACACA--------CACACA--GAT--ACAAAT--AACCGGA----GSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................................................................................GCCCA-G---------------------ACACACACGCACACT------------------CACCCCG........................................................2811.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................CACACACGCACACT------------------CACCCCGCAAGC...................................................2611.001001000
...........................................................................................................................................................................................................................................................................................................................................................................................................CACACGCACACT------------------CACCCCGCAAGCGC.................................................2611.001100000
droBip1
ACTT--T-------------------AG-TTTGAGTCATTGATCTCTT-----TT-----------------TGT--------------------------GTGCGTATGT--------GC--------------------GTGTGCATAGCAT-------GTGTGT--------GTGTG-----ACTA--------TGC------------------------------ATCCGAA-GTGACTCAGTGACGTGCATTTATTCCTGCATAATTATG--CCTTTAATTCATTTTAATCAATCTTAATTAATAAT---TT------------A----------------------CTTCACTTGCAGCCCA-G---------------------ACACA--CGCACGCT------------------CACTC-ACAAGCC-----CCAC--------CACAGA--TAC--AGATAC--AGACCCG----GSizeHit CountTotal NormTotal
No Reads
dp5
GATT--C-------------------AG-T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGCATTAATTTGTGCCTAATTATG--CGTTTAATTTATTTTAATCATTTTTAATTATTAAT---TT------------A----------------------CTTTACTTGCAGCCCTGC---------------------GGA----GACATAGA------------------CATCC----------AGACA-C--------CACACG--CACCCCCAA----------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................GA------------------CATCC----------AGACA-C--------CACACG--C........................2011.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GA----GACATAGA------------------CATCC----------AGACA-C--------CA...............................2311.0010010000000
....................................................................................................................................................................................................................................................................................................................................................................TACTTGCAGCCCTGC---------------------GGA----GAC......................................................................................2111.0010100000000
droPer2
GATT--C-------------------AG-T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGCATTAATTTGTGCCTAATTATG--CGTTTAATTTATTTTAATCATTTTTAATTATTAAT---TT------------A----------------------CTTTACTTGCAGCCCTGC---------------------GGA----GACATAGA------------------TATCC----------AGACA-C--------CACACG--CA--------------CCCC----GSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
------------------------------TTGAGTCATTGATCTCTT-----TTTTCTTATTTTTTTTT-TTGTGTTCGTTTCTTATGCGCTCTTC----TCTTGTGTCG----CTGGTT--------------------GTT-----------------TTGTGT--------GT-------------------------------------------------------------GTGACTCAGTA-------------TCTAACTAATTACACTCTTTTAATTCATTTTAATCATTTTTAATTAAT--------------------------------------------TCTACTTTAAGATAC-T---------------------GCA----ACTGCTGT------------------GACGG----------ACACAGA--------G------------AGGAAG--CTACAAA----GSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTGT------------------GACGG----------ACACAG..........................................1913.00330000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GACGG----------ACACAGA--------G------------AGGAAG--CTA.........2212.00200200
......................................................................................................................................................................................................................................................................................................................................................................................................................T------------------GACGG----------ACACAGA--------G------------AGGAAG--............2012.00220000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GACGG----------ACACAGA--------G------------AGGAAG--C...........2011.00100100
...............................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTGT------------------GACGG----------ACACA...........................................1811.00110000
..........................................................................................................................................................................................................................................................................................................................................................................AAGATAC-T---------------------GCA----ACTGCTGT------------------...............................................................1911.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................................T------------------GACGG----------ACACAGA--------G------------AGGAAG--C...........2111.00110000
...............................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTGT------------------GACGG----------ACACAGA--------G------------AGGA................2511.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GACGG----------ACACAGA--------G------------AGGAAG--CT..........2111.00110000
...........................................................................................................................................................................................................................................................................................................................................................................AGATAC-T---------------------GCA----ACTGCTGT------------------...............................................................1811.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTGT------------------GACGG----------ACACAGA--------.................................2011.00110000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ACGG----------ACACAGA--------G------------AGGAAG--............1811.00110000
...................................................................................................................................................................................................................................................................................................................................................................CTACTTTAAGATAC-T---------------------GCA----ACTGCTGT------------------GA.............................................................2811.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................TGT------------------GACGG----------ACACAGA--------G------------AGGAAG--C...........2311.00100100
droVir3
AATT--TGCGA--ACGGTCTGTGCAACG-CTTGAGTCATTGTCATCTCT--C-C-------------------------------------------------CTCTCTGGTTGTATGAGT--------------------GCGTGCATGT-GT-------TCGTGT----ATGTG---------TGTG--------AGCGGTAAAGAAAAA-TATATAAACCCGTACGCAGTCAAAAACTACTC--TCACTCACATTAATTTATACCTAATTATG--CGCTTAATTAATTTTAATCATTTTTAATTAATAATAATTTGCGTACAA--CTA-----CTTGCAGTTGCCGCAATCTTCAGTTGCAGCTCT-A-CTTTTTGAGTGGGGCGGGGAACA----CGCACA----------------------CCA----------ATACAAC--------CACAC----A---ACCAGC--ACACCCA----CSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAAC--------CACAC----A---ACCAGC--ACAC........2311.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................AATAATTTGCGTACAA--CTA-----CTTGCAGT................................................................................................................................................2711.001000000000000001000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................AATCTTCAGTTGCAGCTCT-A-CT..................................................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
.................TCTGTGCAACG-CTTGAGTCATTGTCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................ATGAGT--------------------GCGTGCATGT-GT-------TCGT...................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................................................................................................................................ACA----------------------CCA----------ATACAAC--------CACAC----A---ACCAGC--A...........2611.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................AATAATTTGCGTACAA--CTA-----CTTG....................................................................................................................................................2311.001000000000000000000100000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................GTGGGGCGGGGAACA----CGCACA----------------------CCA----------AT..............................................2611.001000000000000000000000000000000000000010000000000000000000000000
...................TGTGCAACG-CTTGAGTCATTGTCATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TAATAATTTGCGTACAA--CTA-----CTTG....................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.........................ACG-CTTGAGTCATTGTCATCTCT--C-C-------------------------------------------------.................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000010000000000000000000000000000000000
droMoj3
G----------------------------CTTGAGTCATTATAATTCCC--C-TC----------------------------------------------TCTTGTGCGG----ATAAGT--------------------GCGTGCA---AGT-------GTGTGCGTGAATGTGT---GT----------------GCGGCAAAGAAAAA-TATATAAACTCGATCGCAGTCAAATACTACTC--TGAC--TCATTAATTTATGACTAATTATA--CGCTTAATTAATTTCAATCATTTTTAATTAATAATGCTTTGTGTATAT--CTGCTTTTCTTGCAGTCGCCACAATCTTCAGTTGCAGCTCT-CATTTTTTGAGTGGGGCGAGGAACT----CACACGCA------------------CACCA----------ATACAAG--------CACACGCGCCA--ACAAGC--CCACACA-----SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................GTGGGGCGAGGAACT----CACACGC..................................................................................2211.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACGCGCCA--ACAAGC--CCAC........2111.001000010
.....................................................................................................................................................................................................................................................................................................................................................AGTCGCCACAATCTTCAGTTGC.............................................................................................................................2211.001100000
........................................................................................................................................................................................................................................................................................................................................................CGCCACAATCTTCAGTTGCAGCTC........................................................................................................................2411.001000010
..............................................................................................................G----ATAAGT--------------------GCGTGCA---AGT-------GTGT...................................................................................................................................................................................................................................................................................................................................2111.001000010
droGri2
GCTC--G-CGATGAGTGTCTGTGCAACG-CTTGAGTCATTGTCATCTCA--T-TC-TC-------------TCGC---------------GCTTCCCCGT----TGTATGC--------CTGCGTGCAAGTGTTCGTGATTGTGT------------GCGTGCGT--------GCGT---GTGTATGTG--------AGCGGCAACGAAAAAGTACAAAAA---GCCTGCAGTCAAA-GCGACTC--TGACTCACATTAATTTATGCCTAATTATG--AGCTTTATTCATTTTAATCATTTTTAATTAAAAATAATTTGTCTACAGCTCTCCTTTATTTGCAGTCGCCACAATCTTCAGTTGCAGCTCT-CAT--TTTGAATTGGGCGAGGAACATACAC--ACACT------------------CAGAC------------ACAAACA--CACACACAC------------AC--ACACCAA----TSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................GAATTGGGCGAGGAACATA...........................................................................................1920.50101

Generated: 05/18/2015 at 05:11 PM