ID:

dsi_20685

 Coordinate:

2r:4791964-4792113 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-21.3 -21.3 -21.2

Flybase annnotation

exon [2r_4791734_4791963_-]; CDS [2r_4791734_4791963_-]; intron [2r_4791964_4792295_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTAATTATTTCAAGTTTCATATATTAGGAAAAAAGCCATTTTCCTTCCAAAGTTCACGGATTTGGCATACAAAATCAATTAGATATTATACAGCATCCATATTTCAAGACACGAATTGTGTGAACTGCGCCTGCTTGGCTGGCAATTTACCCCTGTGTTCGGCTTTGAACCAACTTTAATAATTGAAAATATTTGTACAGGTGCAGCTTTTGGCTGCGCTACGGTGTCTTAACCAACGAGCAGAGCATTG
**************************************************.................((((((.(((((((...........(((((((((.(((.......))).)))).))..)))(((.((...)).)))..........((.(((((....))))))).......))))))).....))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902009
testis
 M024
male body		 M025
embryo
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
.............................................................................................................................................................................................................GCTTTTGGCTGCGCTACCGTG........................ 21 1 1 2.00 2 0 2 0 0 0 0 0 0
..............TTTCATATATTAGGAAAAA......................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................GTGTGAACTGCGCCT...................................................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................TCCTTCCAAAGTTCACGGATT............................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0
...............................................................................................................CGAATTGTGTGAACTGCGCCT...................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................TGGCTGCGCTACGGTGTCTTA................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................AGCTTTTGGCTGCGCTACGGT......................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GCTTTTGGCTGCGCTACGGT......................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0
..............................................................................................................ACGAGTTGTGTGAGCTGCGCC....................................................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0
..................................................................................................................ATCGTGTGAACTGCGC........................................................................................................................ 16 1 3 0.67 2 2 0 0 0 0 0 0 0
..................................................................................................................ATCGTGTGAACTGCG......................................................................................................................... 15 1 9 0.44 4 4 0 0 0 0 0 0 0
..................................GCCAGGTTCCTTCCGAAGTT.................................................................................................................................................................................................... 20 3 3 0.33 1 1 0 0 0 0 0 0 0
...............TTGATATAGTAGGAAAAAA........................................................................................................................................................................................................................ 19 2 5 0.20 1 0 0 0 0 0 1 0 0
.......................................TTTCCTTCCGAAGTT.................................................................................................................................................................................................... 15 1 10 0.20 2 1 0 0 0 0 1 0 0
..................................................................................................................ATCGTGTGAACTGCGCA....................................................................................................................... 17 2 7 0.14 1 1 0 0 0 0 0 0 0
............................................................................................................................................GGCATTTTACCCCGGTTTTC.......................................................................................... 20 3 9 0.11 1 0 0 0 0 0 1 0 0
..................................................................................................................ATCGTGTGAACTGCGCGCG..................................................................................................................... 19 3 10 0.10 1 1 0 0 0 0 0 0 0
............TGTTTCATCTATGAGGAAAA.......................................................................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 1 0
...............TTCATATACCAGGAAAAA......................................................................................................................................................................................................................... 18 2 12 0.08 1 0 0 0 0 0 0 0 1
....................................................................................ATTGTACAGCATCCA....................................................................................................................................................... 15 1 14 0.07 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................GTGTTAGGCTTTGAAGC............................................................................... 17 2 14 0.07 1 0 0 0 0 0 1 0 0

Anti-sense strand reads

GATTAATAAAGTTCAAAGTATATAATCCTTTTTTCGGTAAAAGGAAGGTTTCAAGTGCCTAAACCGTATGTTTTAGTTAATCTATAATATGTCGTAGGTATAAAGTTCTGTGCTTAACACACTTGACGCGGACGAACCGACCGTTAAATGGGGACACAAGCCGAAACTTGGTTGAAATTATTAACTTTTATAAACATGTCCACGTCGAAAACCGACGCGATGCCACAGAATTGGTTGCTCGTCTCGTAAC
**************************************************.................((((((.(((((((...........(((((((((.(((.......))).)))).))..)))(((.((...)).)))..........((.(((((....))))))).......))))))).....))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 M023
head
......................................AAAAGGAAGGTTTCAAGTG................................................................................................................................................................................................. 19 0 1 2.00 2 2 0 0 0 0 0
...............................................................................................................................................................................................................................CACAGAATTGGTTGCTCGTCTC..... 22 0 1 2.00 2 2 0 0 0 0 0
...................................GGTAAAAGGAAGGTTTCAAGT.................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0
..........................................GGAAGGTTTCAAGTGCCTAA............................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 1 0 0
.....................................................................................AATATGTCGTAGGTATAAAGT................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0
..................................................................................................................................................AATGGGGACACAAGCCGAAAC................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................CCGAAACTTGGATGA........................................................................... 15 1 3 0.67 2 0 0 2 0 0 0
............................................................................................................................................................................................................................TGCCACGGAATTGGTTGA............ 18 2 3 0.33 1 0 0 0 0 1 0
...............................................................................................................................................................TCCGAAACTTGGATGA........................................................................... 16 2 20 0.20 4 0 0 4 0 0 0
............................................................................................................................................................................................................................TGCCACGGAATTGGTTGAC........... 19 3 8 0.13 1 0 0 0 0 0 1
...................................................................................................................................................................................................................ACGACGCGATGCCTCAG...................... 17 2 9 0.11 1 0 0 1 0 0 0
...........................................................................................................................................................................................................................GTGCCACGGAATTGGTT.............. 17 2 11 0.09 1 0 0 1 0 0 0
.............................................................................................................................................................................................................................GCCACGGAATTGGTTGA............ 17 2 11 0.09 1 0 0 1 0 0 0
........AAGCTGAACGTATATAATCC.............................................................................................................................................................................................................................. 20 3 13 0.08 1 0 0 0 1 0 0
....................................................................................TAACATGTCGTAGGT....................................................................................................................................................... 15 1 14 0.07 1 0 0 1 0 0 0
..................................................................................................................................................................................................................................TGAATTGGTTGCTCG......... 15 1 15 0.07 1 0 0 0 1 0 0
................................................................................................................................................................CCGAAACTTGGATGAC.......................................................................... 16 2 20 0.05 1 0 0 1 0 0 0
.........................................AGGAAGGTTTCAGGGG................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0
....................................................................................................................................................................................................................CGACTCGATGCCCCAG...................... 16 2 20 0.05 1 0 0 0 1 0 0

Generated: 04/23/2015 at 04:40 AM