ID:

dsi_20668

Coordinate:

2r:5592029-5592178 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-22.1	-22.1	-21.9

Flybase annnotation

exon [2r_5591916_5592028_+]; CDS [2r_5591916_5592028_+]; intron [2r_5592029_5592334_+]

No Repeatable elements found

mature

star

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CGCATTCGGATGTGGATACTCTGACGACCCGCATCTCGACACTGACCCATGTAAGTGCTCATTAGACATTGTCTTATCAGTCGAAAAAGAAAAACAAGCAGCATTGCGCACACTTTCGATCTTCCACGTATGCTCATCTTGCTCTGTATATTTCTATCCGATAACATAACTCATGCTATGCCATTGCCGTAGAGCGACTCTTCCGAGGTCGAGTGTGATCAGAGTACAAACTATAGCACCGATAATTCGG ************************************************...(((((((...((((...)))).....((((....(((((.((((((((...((.(((.((..............)).))).))..))))).)))...)))))...))))..((((........))))...........)))).))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	M023 head	M025 embryo	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
..................................CTCGACACTGACCCATGTAAG...................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0
..........TGTGGATACTCTGACGACCC............................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0
.GCATTCGGATGTGGATACTCTGACG................................................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0
...............ATACTCTGACGACCCGCAT........................................................................................................................................................................................................................	19	0	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................GAGTACAAACTATAGCACC..........	19	0	1	1.00	1	0	1	0	0	0
.GCATTCGGATGTGGA..........................................................................................................................................................................................................................................	15	0	2	0.50	1	1	0	0	0	0
........................................................................................................................CTTCCACGTATGCTC...................................................................................................................	15	0	5	0.20	1	0	0	0	1	0
..........................ACCAGTATCTCGATACTGA.............................................................................................................................................................................................................	19	3	6	0.17	1	0	0	0	0	1
..........................................................................TCTCAGTCGACAAAGAAAA.............................................................................................................................................................	19	2	8	0.13	1	0	0	0	1	0

Anti-sense strand reads

GCGTAAGCCTACACCTATGAGACTGCTGGGCGTAGAGCTGTGACTGGGTACATTCACGAGTAATCTGTAACAGAATAGTCAGCTTTTTCTTTTTGTTCGTCGTAACGCGTGTGAAAGCTAGAAGGTGCATACGAGTAGAACGAGACATATAAAGATAGGCTATTGTATTGAGTACGATACGGTAACGGCATCTCGCTGAGAAGGCTCCAGCTCACACTAGTCTCATGTTTGATATCGTGGCTATTAAGCC ************************************************...(((((((...((((...)))).....((((....(((((.((((((((...((.(((.((..............)).))).))..))))).)))...)))))...))))..((((........))))...........)))).))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	M053 female body	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries
......................................................................................................................................................................................................AGAAGGCTCCAGCTCACAATA...............................	21	1	1	1.00	1	1	0	0	0
............................................................................................................GTGTGAAAGCTCGGAGTTGCA.........................................................................................................................	21	3	2	0.50	1	0	1	0	0
..................................................................................................................................................................................ACGGTAACGGCATCT.........................................................	15	0	4	0.25	1	0	0	0	1
................................................................................................................................................................................................TCCCTGAGAAGGCTCCG.........................................	17	2	6	0.17	1	0	0	1	0
............................................................................................................................................................AGGCTATTGTATTCA...............................................................................	15	1	6	0.17	1	1	0	0	0
..................................................................................................................AAGCCAGAAGGTTCATA.......................................................................................................................	17	2	11	0.09	1	0	0	1	0
...............................................................................................................................................................................................CTCCCTTTGAAGGCTCCAG........................................	19	3	17	0.06	1	0	0	1	0
....................................................................................................CGCAACGCGTGGGAATGC....................................................................................................................................	18	3	20	0.05	1	0	0	1	0
..................................................................................................................................................................................ACGGTAACGTCATCT.........................................................	15	1	20	0.05	1	0	0	0	1

Generated: 04/23/2015 at 06:02 PM