ID:

dsi_20651

Coordinate:

3r:4370430-4370493 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3r_4369312_4370429_+]; CDS [3r_4369312_4370429_+]; CDS [3r_4370494_4371600_+]; exon [3r_4370494_4371875_+]; intron [3r_4370430_4370493_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------################################################## TGAACATCCTCTGGGAACTATTGCACAACATGCGGGATCATTATAATGAGGTGAGCGTTGAGAAATTCTGTAAGCCTTTCTTTTGTTTGTAAAACTCTTGGCTTTCCTTTTCAGGTTTTACTGCAACGCTGGGTGCATGTGTTCCGCGAAATTCTCGACAAGGA ************************************************.......(((((((.......(((((....(((((....))))).....)))))...)))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo
.....................TGCACAACATGGGGGATCATGATGA......................................................................................................................	25	3	1	3.00	3	3	0	0	0
........CTCTGGGAACTATTGCA...........................................................................................................................................	17	0	1	1.00	1	0	1	0	0
.............................................................................................................ATGAGGTTTTACTGCAACGCTGGGTGCA...........................	28	2	1	1.00	1	0	1	0	0
......................GCACAACATGGGGGATCATGATGA......................................................................................................................	24	3	1	1.00	1	1	0	0	0
.......................CACAACATGCGGGATCATTATAATGA...................................................................................................................	26	0	1	1.00	1	0	1	0	0
.........................................................TTCAGAAATTCTGTGAGTCTT......................................................................................	21	3	3	0.67	2	0	0	2	0
........................ACAACATGGGGGATCATGATGA......................................................................................................................	22	3	4	0.50	2	2	0	0	0
......................GCACAACATGTGGGATCAT...........................................................................................................................	19	1	2	0.50	1	1	0	0	0
.....................TGCACAACATGGGGGATCACT..........................................................................................................................	21	2	2	0.50	1	1	0	0	0
.....................TGCACAACATGGGGGATCATGAT........................................................................................................................	23	2	2	0.50	1	1	0	0	0
.......................................................................................TGTAAAACTCTAGGC..............................................................	15	1	8	0.13	1	0	1	0	0
............................................................AGAAATTCTGTGAGTCTT......................................................................................	18	2	8	0.13	1	0	0	1	0
......................................................................TAAGCCTTTATTTGGTTCGT..........................................................................	20	3	14	0.07	1	0	0	0	1
.........................CAACATGGGGGATCAATG.........................................................................................................................	18	3	20	0.05	1	1	0	0	0
............................................AATGGGGAGAGCGTCGAGA.....................................................................................................	19	3	20	0.05	1	1	0	0	0

Anti-sense strand reads

ACTTGTAGGAGACCCTTGATAACGTGTTGTACGCCCTAGTAATATTACTCCACTCGCAACTCTTTAAGACATTCGGAAAGAAAACAAACATTTTGAGAACCGAAAGGAAAAGTCCAAAATGACGTTGCGACCCACGTACACAAGGCGCTTTAAGAGCTGTTCCT ************************************************.......(((((((.......(((((....(((((....))))).....)))))...)))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	M053 female body	M023 head	SRR553488 RT_0-2 hours eggs
........................TGTTGTACCCCCTAGTAGTA........................................................................................................................	20	2	1	1.00	1	1	0	0	0	0
...............................................CGCCACTCGCAACTCT.....................................................................................................	16	1	2	0.50	1	0	1	0	0	0
.............................................................................................................AAGTCGAAAATGATGTTGC....................................	19	2	3	0.33	1	0	0	1	0	0
.............................................................................................................AAGTCGCAAATGACGTTG.....................................	18	2	4	0.25	1	0	0	0	1	0
........................TGTTGTGTGCCCTAG.............................................................................................................................	15	2	20	0.05	1	0	0	0	0	1
.............................................................................................................................................ATGGCGCTTTAGGAGCT......	17	2	20	0.05	1	0	0	0	0	1
..........................CTGTACGCCCTAGTTA..........................................................................................................................	16	2	20	0.05	1	0	0	0	0	1

Generated: 04/24/2015 at 04:19 AM