ID:

dsi_20625

 Coordinate:

x:165461-165656 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-39.9 -39.5 -39.5

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+
AT_richLow_complexityLow_complexity+
mature
  1. 2l:9954912-9954930 -
  2. 2l:12811981-12811999 -
  3. 3l:2222454-2222472 +
  4. 3l:17252035-17252053 -
  5. 3r:13149075-13149093 -
  6. 3r:13976163-13976181 -
  7. dsi_20625  x:165518-165536 +
  8. x:5739236-5739254 +
  9. x:9568471-9568489 -
star

Sense Strand Reads

TCGAAAGTGACTGCTCCCCGAAGATCCGAAGATAAAATAAATATAGAGAGGTCTCCAAAAAAAGTTCATGGTACTGCCACAAGATCCTCCCGGCAGGTGTGTTTGTGTGTGTGCGTGTGTCTGTGTGTGTTGGTTGGCGGTATATAATGAGCGTAACCAGTGGTTTAAGAAGTCAAAGCCCAATCGAAAGTTGAACACAAGAAACCGCAAAAAGCACCAGAAAGTGCATTTTGAAATATATATTTTTTTATATTTTTTTATACGTTTTGAAAAATGTTGGACCCTTGTTAGAATTC
**************************************************....(((...........)))..(((((.............)))))((((((((....((((((.....((((.((((..((((((((............)).))))))(((((((......((((..............)))).......))))))).....))))))))..))))))....)))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 M053
female body
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
...........................................................................................................................TGGGTGTTGGTTGGCGGAATCTA...................................................................................................................................................... 23 3 1 6.00 6 0 6 0 0 0 0 0 0
...........................................................................................................TGTGTGCGTGTGTCTGTGT.......................................................................................................................................................................... 19 0 9 2.67 24 23 0 0 1 0 0 0 0
.............................................................................................................TGTGCGTGTGTCTGTGTGTG....................................................................................................................................................................... 20 0 6 2.33 14 14 0 0 0 0 0 0 0
...........................................................................................................TGTGTGCGTGTGTCTGTGTG......................................................................................................................................................................... 20 0 7 2.29 16 16 0 0 0 0 0 0 0
...........................................................................................................TGTGTGCGTGTGTCTGTG........................................................................................................................................................................... 18 0 14 2.00 28 27 0 0 0 0 0 1 0
...........................................................................................................TGTGTGCGTGTGTCTGTGTGT........................................................................................................................................................................ 21 0 5 1.20 6 6 0 0 0 0 0 0 0
..........................................ATAGTGAGGTCTCCAAAAAAAA........................................................................................................................................................................................................................................ 22 2 1 1.00 1 0 0 1 0 0 0 0 0
..GAAAGTGCCTGCTCCCGGAA.................................................................................................................................................................................................................................................................................. 20 2 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................TGTGCGTGTGTCTGTGTGTGT...................................................................................................................................................................... 21 0 5 1.00 5 5 0 0 0 0 0 0 0
...............................................................................................................TGCGTGTGTCTGTGTGTGT...................................................................................................................................................................... 19 0 10 0.90 9 8 0 0 1 0 0 0 0
.............................................................................................................TGTGCGTGTGTCTGTGTGT........................................................................................................................................................................ 19 0 7 0.86 6 6 0 0 0 0 0 0 0
TGGAAAGTGCCTGCTCCCGGA................................................................................................................................................................................................................................................................................... 21 3 4 0.50 2 0 2 0 0 0 0 0 0
...........................................................................................................TGTGTGCGTGTGTCTGTGTGTG....................................................................................................................................................................... 22 0 4 0.50 2 2 0 0 0 0 0 0 0
.........................................................................................................TGTGTGTGCGTGTGTCTGTGT.......................................................................................................................................................................... 21 0 5 0.40 2 2 0 0 0 0 0 0 0
.........................................................................................................TGTGTGTGCGTGTGTCTGTG........................................................................................................................................................................... 20 0 8 0.38 3 3 0 0 0 0 0 0 0
...........................................................................................................TGTGTGCGTGTGTCTGTGTGTGT...................................................................................................................................................................... 23 0 3 0.33 1 1 0 0 0 0 0 0 0
...............................................................................................................TGCGTGTGTCTGTGTGTG....................................................................................................................................................................... 18 0 12 0.33 4 4 0 0 0 0 0 0 0
.......................................................................................................TGTGTGTGTGCGTGTGTCTG............................................................................................................................................................................. 20 0 5 0.20 1 1 0 0 0 0 0 0 0
..........................................................................................................GTGTGTGCGTGTGTCTGTGT.......................................................................................................................................................................... 20 0 6 0.17 1 1 0 0 0 0 0 0 0
...............................................................................................................TGCGTGTGTCTGTGTGT........................................................................................................................................................................ 17 0 13 0.15 2 2 0 0 0 0 0 0 0
............................................TGAGATGTCTCCAAAAAAA......................................................................................................................................................................................................................................... 19 2 7 0.14 1 0 0 0 0 1 0 0 0
........................................................................................CCCGGCAGATATGTTTGT.............................................................................................................................................................................................. 18 2 7 0.14 1 1 0 0 0 0 0 0 0
...........................................................................................................TGTGTGCGTGTGTCTGT............................................................................................................................................................................ 17 0 16 0.13 2 2 0 0 0 0 0 0 0
.............................................................................................................TGTGCGTGTGTCTGTGTG......................................................................................................................................................................... 18 0 9 0.11 1 1 0 0 0 0 0 0 0
...............................................................................................................TGCGTGTGTCTGTGTG......................................................................................................................................................................... 16 0 20 0.10 2 2 0 0 0 0 0 0 0
.....................................................................................................................................ATGGCGGTCTATAATGA.................................................................................................................................................. 17 2 10 0.10 1 1 0 0 0 0 0 0 0
..........................................................................................................GTGTGTGCGTGTGTCTGT............................................................................................................................................................................ 18 0 10 0.10 1 1 0 0 0 0 0 0 0
.......................................AATTTAGTGAGGTCTCAAAA............................................................................................................................................................................................................................................. 20 3 12 0.08 1 0 0 1 0 0 0 0 0
.........................................................................................................TGTGTGTGCGTGTGTCTG............................................................................................................................................................................. 18 0 12 0.08 1 1 0 0 0 0 0 0 0
................................................................................................GTGTGTTTGTGTGTGTGCG..................................................................................................................................................................................... 19 0 13 0.08 1 0 0 0 0 0 1 0 0
...........................................TCGAGAGGTCCCCAAAA............................................................................................................................................................................................................................................ 17 2 14 0.07 1 1 0 0 0 0 0 0 0
................................................AGGTCTCCAAAAAAAA........................................................................................................................................................................................................................................ 16 1 14 0.07 1 0 0 0 0 0 0 0 1
................................................................................................................GCGTGTGTCTGTGTGTG....................................................................................................................................................................... 17 0 15 0.07 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AGAAACCGCAAAAGGC................................................................................. 16 1 16 0.06 1 0 1 0 0 0 0 0 0
.............................................................................................................TGTGCGTGTGTCTGTGT.......................................................................................................................................................................... 17 0 16 0.06 1 1 0 0 0 0 0 0 0
........................................................................................................GCGTGTGTGCGTGTGTCTGTG........................................................................................................................................................................... 21 1 18 0.06 1 1 0 0 0 0 0 0 0
................................................................................................................GCGTGTGTCTGTGTGT........................................................................................................................................................................ 16 0 18 0.06 1 1 0 0 0 0 0 0 0
...............................................................................................................TGCGTGTGTCTGTGT.......................................................................................................................................................................... 15 0 20 0.05 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................AAAGACCAATCGAAA........................................................................................................... 15 1 20 0.05 1 0 1 0 0 0 0 0 0
...........................................................................................................TGTGTGCGTGTGTCTG............................................................................................................................................................................. 16 0 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................................................................TCTGTGCGTGTGTCTGTGT.......................................................................................................................................................................... 19 1 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................................................................TGTGTGCGTGTGTCTTTGTG......................................................................................................................................................................... 20 1 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................................................................TGTGTGCTTGTGTCTGTGTGTG....................................................................................................................................................................... 22 1 20 0.05 1 1 0 0 0 0 0 0 0
..............................................................................................................................GTGTTGGTTGGCGGG........................................................................................................................................................... 15 1 20 0.05 1 0 1 0 0 0 0 0 0
...........................................................................................................TGTGTGCGGGGGTCTGTGT.......................................................................................................................................................................... 19 2 20 0.05 1 0 0 0 1 0 0 0 0
...........................................................................................................TGTGTGCGTGTGTCTGTAT.......................................................................................................................................................................... 19 1 20 0.05 1 1 0 0 0 0 0 0 0
......................................................................................................................GTCTGGGTGTGTTGG................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 1 0 0 0
.................................................................................................TGTGTTTGTGTGTGTGC...................................................................................................................................................................................... 17 0 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

AGCTTTCACTGACGAGGGGCTTCTAGGCTTCTATTTTATTTATATCTCTCCAGAGGTTTTTTTCAAGTACCATGACGGTGTTCTAGGAGGGCCGTCCACACAAACACACACACGCACACAGACACACACAACCAACCGCCATATATTACTCGCATTGGTCACCAAATTCTTCAGTTTCGGGTTAGCTTTCAACTTGTGTTCTTTGGCGTTTTTCGTGGTCTTTCACGTAAAACTTTATATATAAAAAAATATAAAAAAATATGCAAAACTTTTTACAACCTGGGAACAATCTTAAG
**************************************************....(((...........)))..(((((.............)))))((((((((....((((((.....((((.((((..((((((((............)).))))))(((((((......((((..............)))).......))))))).....))))))))..))))))....)))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
...................................................................................................................................................................................GGTTAGGTTTCAGCTTGTGTTCGT............................................................................................. 24 3 1 1.00 1 0 0 1 0 0 0
...............................................................................................................................................................................TCCGGGTTGGCTTTCAACT...................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0
....................TTCGAGGCTTCTATTTTA.................................................................................................................................................................................................................................................................. 18 1 2 0.50 1 0 0 0 1 0 0
.......................................................................................................................................CCGCCCTATATCACTCGCGTTG........................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
.............................................CTCTCCAGAGCTGTTTTTC........................................................................................................................................................................................................................................ 19 2 2 0.50 1 0 0 0 0 1 0
..............................................TCTACAGACGTTTTGTTCAAGTA................................................................................................................................................................................................................................... 23 3 2 0.50 1 0 1 0 0 0 0
.........................GTCTTCTATATTATTTATAT........................................................................................................................................................................................................................................................... 20 2 7 0.29 2 0 2 0 0 0 0
.....................TCTTGGCTTCTATTTT................................................................................................................................................................................................................................................................... 16 1 5 0.20 1 1 0 0 0 0 0
....................TTCTAGGCTCCTCTTTTA.................................................................................................................................................................................................................................................................. 18 2 5 0.20 1 0 1 0 0 0 0
.............................................................................................................ACACGCACACAGACACACA........................................................................................................................................................................ 19 0 7 0.14 1 1 0 0 0 0 0
.......................................TTACCTCTCTCCAGAGCTTT............................................................................................................................................................................................................................................. 20 3 8 0.13 1 0 0 0 1 0 0
.............................................................................GTGTCCTGGGAGGGCCGTA........................................................................................................................................................................................................ 19 3 8 0.13 1 1 0 0 0 0 0
..........................GCTTCTATTTTGTTTA.............................................................................................................................................................................................................................................................. 16 1 20 0.10 2 2 0 0 0 0 0
.......ACTGTCGAGGGGCTT.................................................................................................................................................................................................................................................................................. 15 1 14 0.07 1 0 0 0 0 1 0
.........................GGGTTCTATATTATTTAT............................................................................................................................................................................................................................................................. 18 2 20 0.05 1 0 1 0 0 0 0
...................CTTTTAGGCTTCTATTTG................................................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 1 0
........................................................TTTTTTGCAGGTACCATCA............................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:165411-165706 + dsi_20625 TCGAAAGTGACTGCTCCCCGAAGAT-----CCGA-------------------------------------------AGATAA--------------------------AATAAAT--------------ATAGA-------------------------------------------------GAGGTCTCCAAAA------AAAGTTCATGGTAC---TGCCACA---AGATCCTCCC----GGCAGGT--G----TGTT----TG----------------------------------------T--GTGTG--------------------------T--GCG------------TGTG---TCTGTGTGTGTTGG-------------------T---TGGCG---GTATATAATGAG-CGTAACCAGTGGTTTAAGAAGTCAA------------------------------------------------------------------------------AGCCCAATC---GAAAGTTGAA-------CACAAG-A----------------------A-ACCGCAAAAAGCAC-----CAGAAAG--TGCATTTTG-AAATATA--TA-TTTT------------------------------TTT--ATATTT-TTTTATACGTTTT-GAA-AA---------------------------------------------------------AT-GTTGGAC-CCTTGTT-------------------------AGAATT-C
droSec2 scaffold_10:99347-99643 + TCGAAAGTGACTGCTCCCCGAAGAT-----CCGA-------------------------------------------AGATAA--------------------------AATAAAT--------------ATAGA-------------------------------------------------GAGGTCTCCAAAA------AAAGTTCATGTTAC---TGCCACA---AGATCCTCCC----GGCAGGT--G----TGTT----TG----------------------------------------T--GTGTG--------------------------T--GCG------------TGTG---TCTGTGTGTGTTGG-------------------T---TGGCG---GTATATAATGAG-CGTAACCAGTGGTTTAAGAAGTTAA------------------------------------------------------------------------------AGCCCAATC---GAAAGTTGAA-------CACAAG-A----------------------A-ACCGCAAAAAGCAC-----CAGAAAG--TGCATTTTG-AAATATA--TA-TTTT------------------------------TTT-TATATTT-TTTTATACGTTTT-GAA-AA---------------------------------------------------------AT-GTTGGAC-CCTTGTT-------------------------AGAATT-C
dm3 chrX:237103-237408 + TCGAAAGTGACTGCTCCCCGAAGAT-----CCGA-------------------------------------------AGATAA--------------------------AATAAAT--------------TTAGA-------------------------------------------------GAGGTCTTCAAAAAAAAAAAAAGTTCATGGTAC---TGCCACA---AGATCCTCCC----GGCAGGT--G----TGTGCG--TG----------------------------------------T--GTGTG--------------------------T--GCG------------TGTG---CCTGTGTGTGTTGG-------------------T---TGGCG---GTATATAATGAG-CGTAACCAGTGGTTTAAGAAGTCAA------------------------------------------------------------------------------AGCCCAATT---GAAAGTTGAA-------CACGAG-A----------------------A-GCCGTAAAAAGCAC-----CAGAAAG--TGCATTTTG-AAATATA--TA-TTTT------------------------------TTTACATTTTT-TTTTATACGTTTT-GAA-AA---------------------------------------------------------AT-GTTGGAC-CTTTTTT-------------------------AGAATT-C
droEre2 scaffold_4644:183049-183403 + TCGAAAGTGACTGCTCCCCGAAGAT-----CCGA-------------------------------------------AGATAA--------------------------TATAAAT--------------ATAGA-------------------------------------------------GAGGTCTTCAAAA------AAAGTTCATGGTAC---TGCCACA---TGATCCTCCC----GGCAGGT--G----TGTGTGTTTGTTTGTGTGCCTGTGTGTGTGTGTGTGT--------GTGTGTGT--------------GTGTGTTTGCGTGTGTGT--GCG------------TGTG---CTTGTGTGTGTTGG-------------------T---TGGCG---GTATATAATGAG-CGTAACCAGTGGTTTAAGAAGTCAA------------------------------------------------------------------------------AGCCCAATC---GAAAGTTGAA-------CACGAG-A----------------------A-GCCGCAAAAGGCGA-----CAGAAAG--TGCATTTTG-AAATATA--TA-TTTT----------------------------T-TTTTCATATT--TTTTGTACGTTTT-GAA-AA-AGTT--TAA-----------------------------------------------AA-GTTGCGC-CCTTTTA-------------------------AGAATT-A
droYak3 X:167758-168071 + TCGAAAGTGACTGCTCCCCGAAGAT-----CCGA-------------------------------------------AGATAA--------------------------AATAAAT--------------ATAGA-------------------------------------------------GAGGTCTTCAAAA------AAAGTTCATGGTAC---TGCCGCA---AGATCCTCCC----GGCAGGT--G----TATG----------------------------------------------TGTGTGT-TGTTGG------TG-T----TGTGTGT--GCG------------TGTG---CTTGTGTGTGTTGG-------------------T---TGGCG---GTATATAATGAG-CGTAACTAGTGGCTTAAGAAGTCAA------------------------------------------------------------------------------AGCCCAATC---GAAAGTTGAA-------CACGAG-A----------------------A-GCCGCAAAAAGCGG-----CAGAAAG--TGCATTTTA-AAAA-TA--AT-TTTT----------------------------T-TTTCCTTATT--TTTTGTATGTTTT-AAA-ATC-------AA-----------------------------------------------AT-GTTGCAC-CCTTACT-------------------------CGAATT-T
droEug1 scf7180000409277:593443-593797 + TCGAAAGTGACTGCTCCCCGAAGAC-----CCG--------------------------------------------AGATAT-ATA-CA-----TC------TATA--TCTACATATA-----------GTAGA-------------------------------------------------TAGGTCTTCAGAAA----AAGAGTCCATGGTAC---GGACAGC---ATATCCTCCC----GGCACAC--G----TCTC----TG------------TGTGTGTGT--------------GTGTGTG--------TTGGACTGTGTGTGTGTGTCTGTGA--GTG------------TGTG---TGTGTGTGTGTTGG-------------------T---TGGCC---ATATAAAACAAG-CGTTGTCAGCGGCTCAAGAAGTCAA------------------------------------------------------------------------------AGCCCAGTC---GGAACTTGAG-------CTCGAAAA----------------------A-GCCGCA---------------AAAAG--TGCACTTTG-AGTTACG--CA-TTTT---CTGGTCTTTTTCTTTTCTTTTTTTTTTTTGTAATATT--TTTTGTAAGTTTTTGAA-GA---------------------------------------------------------AT-TTTG------------------------------------ACAACA-C
droBia1 scf7180000301760:1243824-1244138 + TCGAAAGTGACTGCTCCCCGAAGAC-----CCG--------------------------------------------AGATC----------------------------ATACCT--------------ACAGA-------------------------------------------------GAGGTCTTCAGAA------AGAGTCCATGGTAC---TGCCGAC---ACATCCTCGC----GGCAGGT--G----TGTG----------------------------------------------TGTGTGT--------------G----TGTGTGTGT--GCG------------TGTG---CCTGTGTGTGTTGG-------------------T---TGGCC---GTATAAAACAGG-CGTAGCCCGCGGCTCAAGAAGCCAC------------------------------------------------------------------------------AGCCCCGGC---GAAACTTGAG-------CCCGAAAA----------------------A-GCCGCAA--AGCGG-----CGAAAAG--TGTTTTTTG-AGAAACC--CCATTTT------------------------------TTTCCACATTTTTTTTGTAAGTTTC-AAG-AATAGCC--A--TCAAG-TT---------------------TTCCAGTCC-----------TAT-----------TC-------------------------CCAGTT-T
droTak1 scf7180000415179:234762-235109 + TCGAAAGTGACTGCTCCCCGAAGAC-----CCA--------------------------------------------AGATAA-ACA-TA-------------TATATC--TATATATA-TTGTATATATATAGA-------------------------------------------------GAGGTCTTCAGAAA-----AGAGTCCATGGTAC---TGCCAACATAATATCCTCCC----GGCAGGT--G----TGT--------------------------------------------------GTGTG--------------------------T--GCG------------TGTG---TTTGTGTGTGTTGG-------------------T---TAGCC---ATATAAAATAAG-CGGTACCAGTGGTTTAAGAAGTCAA------------------------------------------------------------------------------AGCCCAGTC---GAAACTTGAG-------CCCGAAAA----------------------A-GCCGCAAAAAGCGG-----CAAAAAG--TGCATTTCA-AAAA-CCCTCAATTTT------------------------------TTTCAATATTT-TTTTGTAAGTTTTTAAAAAACAGTTGAA--A-------------ATTTTTTTTAAATTTTCCCAGTCC-----------TACT----T----AC-TAAT-------------------------TT-T
droEle1 scf7180000491011:1291542-1291886 + TCGAAAGTGACTGCTCCCCGAAGAC-----CCA--------------------------------------------AGATAT-ATA-TA-------------TATATCTATACAT--------------ATAGA-------------------------------------------------GAGGTCTTCAGAAA-----AAAGTCCATGGTACTACTGCCAAC---AGATCCTCCC----GGCAGGT--G----TGTG----------------------------------------------T--GTGTG--------------------------T--GCG------------AGTG---TGTGTGTGTGTTGG-------------------T---TGGTC---ATATAAAATAAG-AGCTACCAGTGGTTAAAGAAATCAA------------------------------------------------------------------------------AACCCAGTC---GAAACTTGAG-------CCCGAAAA----------------------A-GCCGGA--AAGCGG-----CA-TAAG--TGCATTTTA-AAAAACG--CAATTTT------------------------------TTTGCATATTT-TTTTGTAAGTTTTTTATAAATAGTTACA--ACAAGATTTTACA-ATTTTTAATAGATTTTCCCAAGTT-----------TATT----T-------TAAT-------------------------TT-T
droRho1 scf7180000779506:1075417-1075743 + TCGAAAGTGACTGCTCCCCGAAGAC-----CCA--------------------------------------------AGATAT-ATA-TA-------------------AACACAT--------------ATAGA-------------------------------------------------GAGGTCTTCAGCA------AAAGTCCATGGTACTACTGCCAAC---ATATCCTCCC----GGCAGGT--G----TGTG----------------------------------------------T--GTGTG--------------------------T--GCG--------------TG---TGTGTGTGTGTTGG-------------------T---TGGCC---ATATAAAATAAG-AGCTATAAGTGGCTAAAGAAATCAA------------------------------------------------------------------------------ACTCCAGTC---GAAACTTGAG-------CCCGAAAA----------------------AGGCCGG--AAAGCGG-----CAAAAAG--TGCATTTGTAAAAAATA--CA-TTTT------------------------------TTTCCAAGTT--TTTTTTAAGTTTT-AAT-AATAGTTGCA--AGAAGTTTTTACACACT---------TTTTCGCAGATT-----------TATT----T-------TAGT-------------------------TT-T
droFic1 scf7180000453927:703578-703887 + TCGAAAGTGATTGCTCCCCGAAGAC-----CCG--------------------------------------------AGCTAT-ATA----------------------AATAAAT--------------ATAAA-------------------------------------------------GAGGTCTTCAGAAA-----AAAGTCCATGGTAC---TGTCTAA---AGATCCTCCA----GTCAGGT--G----TGTG----------------------------------------------T------------------------------------GTG--------------TG---TGTTTGAGTGTTGG-------------------T---TGGCC---GTATAAAACGCG-ACTTAGCAGTGGCCTTTGAAGTCAA------------------------------------------------------------------------------AACTCATTC---GAAACTTGAG-------TTCGAAAA----------------------A-GCCGCAAAAATCGT-----TA-AAAG--TGCCTCTAA-GAAT-CT----------TTTTTATTT--------------------GTTTAATATT--TTTTGTAAGTTTTTGAA-AG-AGTT-----------TT---------------------TTTTTGTCTTTTTTTTAA--TG-------ATTTGTT-------------------------AATATT-T
droKik1 scf7180000302610:1316779-1317113 - TCGAAAGTGACTGCTCCCC-AAGAC-----CCGG------------------------------------AGACCGGAGATACTATA-TACACGACCG------ATA----------TT-TTGTATAT--ATAAA-----------------------------------------------------------GGA------AAAGTTCATGGTAC---TG----G---AGATGCTCCT----CGCAGGT--G----TGTG----------------------------------------------T----GTG--------------------------T--GTGTGTGTCTGTGTGTGTTCTGCGTGTGTGTGCTGC----------CTGGCTGCGT---TGGCC---GTATAAAG-GCG-AGTTGCCAGCGGCTAAATAAGTTAA------------------------------------------------------------------------------ACGTCAGTT----AAGCGCCAG-------TACAAAAA----------------------C-GCCGCAGAGAGCGGG----TGAAAAG--TGCTCT-------------CAGTTTCTTTTTTATTTATATATATTATTT-T-TTTTTTTT-----------AATATTTTTT-TAA-CC---------------------------------------------------------AT-TTT----T-TGTGCC-------------------------AGAGTT-T
droAna3 scaffold_13117:4932725-4933061 + TCGAAAGTGACTGCTCCCCACACAC-----AAGA-------------------------------------------AGCCAA--------------------------G-------TTA--GCAAGTCACCAAGGAGGCCCCCCTTGTATTGTATTTTTCTCATAAAAAAATAAAT------------------AT------AAATTTTTTGAATC---TGCCAC----AGATCCTG-T----GCTGGGT--C----TGTCAG--TG----------------------------------------T--GTGTG--------------------------T--GTG------------TGTG---TATCTGTGTGTTGG-------------------T---CAGCTGATGTATAAAAAGAG-AGCCACCAGCCCGAAAAGAAGTTAA------------------------------------------------------------------------------AAGCAAGAC--TCAAGCTCAAG-------CCTAAAAA----------------------A-GCCGCAA--AGCGGTTGCCGAAAAAG--TGCATT--------------A-TT------------------------T-T-TTT-TTTCAATTTTT-TTATGTAAGTTTTT----------------------------------------------------------------------------------TTTTTAGCCAGCCATGGCC-CAGACACACA-C
droBip1 scf7180000396323:3582-3926 - TCGAAAGTGACTGCTCCCCACACAC-----AAGA-------------------------------------------AGCCAA--------------------------G-------TTA--GCAAGTCACCAAGGAGGCCCCCCTTGCATTGTATTTT---CA-AAAAAAATATATATTATTCGAGTTTTCGAACA------AAACT----GAATC---TGCCAC----AGATCCTG-------GGCTGT--C----TCTG------------------------------------------TGTCTGTGTG--------------TGCCT----GTTTGT--GTG------------TGTG---TGTGTATGTGTTGG-------------------C---CAGCTGATGTATAAAAAGAG-AGCCACCAACCCGAAAAGAAGTTAA------------------------------------------------------------------------------AAGCCAGAT--TCAAGCTCAAG-------CCTAAAAA----------------------A-GCCGCAA--AGCGGTTGCCGAAAAAG--TGCATT--------------A-TTTT------------------------------TTTCAATTTT--TTTTTTATTTTTT-AGC-C--------------------------------------------------------------------------------------A--CATGGCCACAAACACACACA
dp5 XL_group1e:4214069-4214463 + TCGAAAGTGACTGCTCTCTCAATAT-----CCCAGACCCAAGCAGAGACCGAGAC------TGAGACCGGAGACCGGAGCCCCC-TCGAAGACGACCAAGAGG-------------------------------C-------------------------------------------------GACATTTC------------CAGTTCATGGTAC---CCTCCAC---ATATCCTACGAAACAGCAA--CTACATC----TGCACATCTGTAT--CTAAATCCATGTCTCCGGGTGTACATACATATAT--------------GTGTGCTTGGGCAGGAGT--GTG------------TATG---TGTGTGTGTGTTGG----------A--------TTCATAGTC---ATATAAAGACAG-AGGTCCATGCGGATCA---------------------------------------------------------------------------------------TTCCATGTCTGT--------CG-------TTCGAAGA----------------------A-ACAATCGGGACCGG-----CAAAAAG--TGCATCGGG-AAAT-TA----------TTCGAGTATATGTATGTTATATCTTT--------TTTTT--TTGCGTACATTTT-----------------------------------------------------------------T-GTTTTTC-CAGTGTTTAAT-------------------------TC-A
droPer2 scaffold_17:1156223-1156613 + TCGAAAGTGACTGCTCTCTCAATAT-----CCCAGACCCAAGCGGAGACCGAGACTGAGACTGAGACCGGAGACCGGAGCCCCC-TCGAAGACGACCAAGAGG-------------------------------C-------------------------------------------------GACATTTC------------CAGTTCATGGTAC---CCTCCAC---ATATCCTACGAAACAGCAA--CTACATC----TGCACATCTGTAT--CTAAATCCATGCCTCCGG--------GTGTATAT--------------GTGTGCTTGGGCAGGAGT--GTG------------TATG---TGTGTGTGTGTTGG----------A--------TTCATAGTC---ATATAAAGACAG-AGGTCCATGCGGATCA---------------------------------------------------------------------------------------TTCCATGTCTGT--------CG-------TTCGAAGA----------------------A-ACAATCGGGACCGG-----CAAAAAG--TGCATCGGG-AAAA-TA----------TTCGAGTATATGTATGTTATATCTTTTT-TT-----------TGCGTACATTTT-----------------------------------------------------------------T-GTTTTTT-CAGTGTTTAAT-------------------------TC-A
droWil2 scf2_1100000004909:5339683-5340016 - TCGAAAGTGACTGCTCCGTAGG-CTGTAAGGCAA-------------------------------------------AAATAA--------------------------AA------TCA--ACAATTCCTCTAAGAAACA----------------------------------------------------------------AATACA--AAAT---TAA-AG----AAAACCTA-T----AGTAGACCTA------T------------AT--CTACATA------------------------TATATA--------------TATAT----ATA--T--ATATA----------TATA---TGTATATATATCGAGATATATACAA--------T---GTA------TATATT---------AGCTACTACTTTGACA-GTTCC-----------------------------------------------------------------TTTTAAAGTGTTTTTTGGTGTTTTT--------TAGTTTTAGTTA----AATCAACAAGAAA----------A-AAAATTA-AAGT----GCCAAACATA--TACAT---------------A-TT------------------------T-T-TTT-TTTTAATTTT--TTTCTTTTTTTTT-----------------------------------------------------------------T-CCTTTTG-GAAAATTTGGC------T--AATAGACGGGTACACACT-C
droVir3 scaffold_13042:3952611-3952861 - GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G----TGTC----TG----------------------------------------C--TTGTG--------------------------TGTGCG--------------TG---TGTGTGTGTGTGGA-------------------T--ATGGGC---ATATAAAGGCAGCCGCCACAAGTGCC----------GCGACTTCATTGCATATGCGACGCGAAGAA-AATCAAAACTAAAAAACAAATTCAAAAA-CTTAAAAAATAAATAAAAAATAAA----GTTT--------TGAAAAAAA-----------------AAATAAAAGAAAAACACCGCATAAAGCGG-----CAA--AGTGCAAGCTTAT-AAAA-TT---A-TTTA--------------------TTTA------TT----TTT---TTTT---GGTTTT-------------------------------------------------------------------GTT----T-------TTTT-------------------------TT-C
droMoj3 scaffold_6359:2437503-2437743 + GTGTGTGTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGT--------------GTGTGTATGCGTGTATGC--GTG------------TGTG---CATGTGTGTGTAGG----------A--------T---TGGCC---ATATAGAGGCCGCCGCTACAAGTGCC----------GCGACTTAATTGAACTTGCCACGCGAACAAAAAACAAAACTACAAAA-ATTTTCACAAAATTTTCAAATTTAAGAAAATTTTAAATGTGTAC--------TGAAATTAA-----------------ATTTAAAAACA----------------------------GA--TAG-----------------A-TT------------------------C-T-TTA-TTTTA----------AATATTTTTT------------------------------------------------------------------TTTT----T-------TGTT-------------------------TT-C
droGri2 scaffold_14853:2774486-2774529 - G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT--G----TGTG----TA----------------------------------------T--GTGTG--------------------------T--GTG------------TGTG---TATGTATGTGCAGG-------------------G---AGGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCGAAAGTGACTGCTCCCCGAAGAT-----CCGA-------------------------------------------AGATAA--------------------------AATAAAT--------------ATAGA-------------------------------------------------GAGGTCTCCAAAA------AAAGTTCATGGTAC---TGCCACA---AGATCCTCCC----GGCAGGT--G----TGTT----TG----------------------------------------T--GTGTG--------------------------T--GCG------------TGTG---TCTGTGTGTGTTGG-------------------T---TGGCG---GTATATAATGAG-CGTAACCAGTGGTTTAAGAAGTCAA------------------------------------------------------------------------------AGCCCAATC---GAAAGTTGAA-------CACAAG-A----------------------A-ACCGCAAAAAGCAC-----CAGAAAG--TGCATTTTG-AAATATA--TA-TTTT------------------------------TTT--ATATTT-TTTTATACGTTTT-GAA-AA---------------------------------------------------------AT-GTTGGAC-CCTTGTT-------------------------AGAATT-CSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................TGTG--------------------------T--GCG------------TGTG---TCTGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1992.6724000000000023100000
..........................................................................................................................................................................................................................................................................................................................TG--------------------------T--GCG------------TGTG---TCTGTGTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2062.3314000000000014000000
........................................................................................................................................................................................................................................................................................................................TGTG--------------------------T--GCG------------TGTG---TCTGTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................2072.2916000000000016000000
........................................................................................................................................................................................................................................................................................................................TGTG--------------------------T--GCG------------TGTG---TCTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................18142.0028001000000027000000
........................................................................................................................................................................................................................................................................................................................TGTG--------------------------T--GCG------------TGTG---TCTGTGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2151.20600000000006000000
..........................................................................................................................................................................................................................................................................................................................TG--------------------------T--GCG------------TGTG---TCTGTGTGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2151.00500000000005000000
......................................................................................................................................................................................................................................................................................................................................................T--GCG------------TGTG---TCTGTGTGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................19100.90900000000008100000
..........................................................................................................................................................................................................................................................................................................................TG--------------------------T--GCG------------TGTG---TCTGTGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.86600000000006000000
........................................................................................................................................................................................................................................................................................................................TGTG--------------------------T--GCG------------TGTG---TCTGTGTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.50200000000002000000
....................................................................................................................................................................................................................................................................................................................T--GTGTG--------------------------T--GCG------------TGTG---TCTGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.40200000000002000000
....................................................................................................................................................................................................................................................................................................................T--GTGTG--------------------------T--GCG------------TGTG---TCTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................2080.38300000000003000000
........................................................................................................................................................................................................................................................................................................................TGTG--------------------------T--GCG------------TGTG---TCTGTGTGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2330.33100000000001000000
......................................................................................................................................................................................................................................................................................................................................................T--GCG------------TGTG---TCTGTGTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................18120.33400000000004000000
..........................................................................................................................................................................................................................................................................TG----------------------------------------T--GTGTG--------------------------T--GCG------------TGTG---TCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.20100000000001000000
.......................................................................................................................................................................................................................................................................................................................GTGTG--------------------------T--GCG------------TGTG---TCTGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.17100000000001000000
......................................................................................................................................................................................................................................................................................................................................................T--GCG------------TGTG---TCTGTGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................17130.15200000000002000000
........................................................................................................................................................................................................................................................................................................................TGTG--------------------------T--GCG------------TGTG---TCTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................17160.13200000000002000000
..........................................................................................................................................................................................................................................................................................................................TG--------------------------T--GCG------------TGTG---TCTGTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................1890.11100000000001000000
......................................................................................................................................................................................................................................................................................................................................................T--GCG------------TGTG---TCTGTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.10200000000002000000
.......................................................................................................................................................................................................................................................................................................................GTGTG--------------------------T--GCG------------TGTG---TCTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................18100.10100000000001000000
....................................................................................................................................................................................................................................................................................................................T--GTGTG--------------------------T--GCG------------TGTG---TCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................18120.08100000000001000000
.........................................................................................................................................................................................................................................................GT--G----TGTT----TG----------------------------------------T--GTGTG--------------------------T--GCG------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................19130.08100010000000000000
.........................................................................................................................................................................................AGGTCTCCAAAA------AAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16140.07100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................GCG------------TGTG---TCTGTGTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................17150.07100000000001000000
..........................................................................................................................................................................................................................................................................................................................TG--------------------------T--GCG------------TGTG---TCTGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................17160.06100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................GCG------------TGTG---TCTGTGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................16180.06100000000001000000
......................................................................................................................................................................................................................................................................................................................................................T--GCG------------TGTG---TCTGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000001000000
........................................................................................................................................................................................................................................................................................................................TGTG--------------------------T--GCG------------TGTG---TCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................GTGTTGG-------------------T---TGGCG---GG...............................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000001000000000
..........................................................................................................................................................................................................................................................T--G----TGTT----TG----------------------------------------T--GTGTG--------------------------T--GC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.05100000000001000000
droSec2
TCGAAAGTGACTGCTCCCCGAAGAT-----CCGA-------------------------------------------AGATAA--------------------------AATAAAT--------------ATAGA-------------------------------------------------GAGGTCTCCAAAA------AAAGTTCATGTTAC---TGCCACA---AGATCCTCCC----GGCAGGT--G----TGTT----TG----------------------------------------T--GTGTG--------------------------T--GCG------------TGTG---TCTGTGTGTGTTGG-------------------T---TGGCG---GTATATAATGAG-CGTAACCAGTGGTTTAAGAAGTTAA------------------------------------------------------------------------------AGCCCAATC---GAAAGTTGAA-------CACAAG-A----------------------A-ACCGCAAAAAGCAC-----CAGAAAG--TGCATTTTG-AAATATA--TA-TTTT------------------------------TTT-TATATTT-TTTTATACGTTTT-GAA-AA---------------------------------------------------------AT-GTTGGAC-CCTTGTT-------------------------AGAATT-CSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................AAGTTCATGTTAC---TGCCACA---AG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
..................................................................................................................................................................................................................................................................TGTT----TG----------------------------------------T--GTGTG--------------------------T--GCG------------TGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.1410010
....................................................................................................................................................................................................................................................................................................................T--GTGTG--------------------------T--GCG------------TGTG---TCTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................2080.1310001
..........................................................................................................................................................................................................................................................................TG----------------------------------------T--GTGTG--------------------------T--GCG------------TGTG---TC............................................................................................................................................................................................................................................................................................................................................................................................................................................................18120.0810010
........................................................................................................................................................................................................................................................................................................................TGTG--------------------------T--GCG------------TGTG---TCTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................18130.0811000
.........................................................................................................................................................................................................................................................GT--G----TGTT----TG----------------------------------------T--GTGTG--------------------------T--GC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510010
dm3
TCGAAAGTGACTGCTCCCCGAAGAT-----CCGA-------------------------------------------AGATAA--------------------------AATAAAT--------------TTAGA-------------------------------------------------GAGGTCTTCAAAAAAAAAAAAAGTTCATGGTAC---TGCCACA---AGATCCTCCC----GGCAGGT--G----TGTGCG--TG----------------------------------------T--GTGTG--------------------------T--GCG------------TGTG---CCTGTGTGTGTTGG-------------------T---TGGCG---GTATATAATGAG-CGTAACCAGTGGTTTAAGAAGTCAA------------------------------------------------------------------------------AGCCCAATT---GAAAGTTGAA-------CACGAG-A----------------------A-GCCGTAAAAAGCAC-----CAGAAAG--TGCATTTTG-AAATATA--TA-TTTT------------------------------TTTACATTTTT-TTTTATACGTTTT-GAA-AA---------------------------------------------------------AT-GTTGGAC-CTTTTTT-------------------------AGAATT-CSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-GAA-AA---------------------------------------------------------AT-GTTGGAC-CTTTTTT-------------------------A.......2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-GAA-AA---------------------------------------------------------AT-GTTGGAC-C.......................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-GAA-AA---------------------------------------------------------AT-GTTGGAC-CTTTTT..................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................T--GCG------------TGTG---CCTGTGTGTGTTGG-------------------T---TG.......................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
...........................................................................................................................................................................................................AAAGTTCATGGTAC---TGCCACA---AGATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TCGAAAGTGACTGCTCCCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GCTCCCCGAAGAT-----CCGA-------------------------------------------AGATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................GTGTTGG-------------------T---TGGCG---GTATATAAT........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........................................................................................................................................................................................................................................................................................................................................................................G---CCTGTGTGTGTTGG-------------------T---TG.......................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TG--------------------------T--GCG------------TGTG---CCTGTGTGTGTTGG-------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATT---GAAAGTTGAA-------CACG............................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---GAAAGTTGAA-------CACGAG-A----------------------A-GC..............................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AGTGACTGCTCCCCGAAGAT-----CC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT---GAAAGTTGAA-------CACGA...........................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................CCCGAAGAT-----CCGA-------------------------------------------AGATAA--------------------------AAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................GATCCTCCC----GGCAGGT--G----TGTGCG--...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................G----------------------------------------T--GTGTG--------------------------T--GCG------------TGTG---CCTGTGTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TGCTCCCCGAAGAT-----CCGA-------------------------------------------AGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATT---GAAAGTTGAA-------CACG............................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................TGTG---CCTGTGTGTGTTGG-------------------T---TGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-GAA-AA---------------------------------------------------------AT-GTTGGAC-CTTTTTT-------------------------........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................T--------------TTAGA-------------------------------------------------GAGGTCTTCAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.............................................................................AGATAA--------------------------AATAAAT--------------TTAGA-------------------------------------------------GAGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................ATCCTCCC----GGCAGGT--G----TGTGCG--TG----------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TATATAATGAG-CGTAACCAGTGGTT......................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................TGTG---CCTGTGTGTGTTGG-------------------T---T........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TCGAAAGTGACTGCTCCCCGAAGAT-----CC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........ACTGCTCCCCGAAGAT-----CCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-AA---------------------------------------------------------AT-GTTGGAC-CTTTTTT-------------------------AGA.....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................GTGCG--TG----------------------------------------T--GTGTG--------------------------T--GCG------------TGTG---C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................G--------------------------T--GCG------------TGTG---CCTGTGTGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................AGGT--G----TGTGCG--TG----------------------------------------T--GTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1860.1710000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................GTGCG--TG----------------------------------------T--GTGTG--------------------------T--GCG------------TGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................G----TGTGCG--TG----------------------------------------T--GTGTG--------------------------T--GCG------------TGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2270.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TGTGCG--TG----------------------------------------T--GTGTG--------------------------T--GCG------------T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................19150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................T--GCG------------TGTG---CCTGTGTGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................1980.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................T--GCG------------TGTG---CCTGTGTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................1880.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................G--TG----------------------------------------T--GTGTG--------------------------T--GCG------------TGTG---C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TGTGCG--TG----------------------------------------T--GTGTG--------------------------T--GCG------------TG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................20100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................GGT--G----TGTGCG--TG----------------------------------------T--GTGTG--------------------------T--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................GTGCG--TG----------------------------------------T--GTGTG--------------------------T--GCG------------T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................18180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TGCG--TG----------------------------------------T--GTGTG--------------------------T--GCG------------TG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................18190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................G----TGTGCG--TG----------------------------------------T--GTGTG--------------------------T--GCG------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........................................................................................................................................................................................................................................................T--G----TGTGCG--TG----------------------------------------T--GTGTG--------------------------T--GC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................GT--G----TGTGCG--TG----------------------------------------T--GTGTG--------------------------T--GC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
droEre2
TCGAAAGTGACTGCTCCCCGAAGAT-----CCGA-------------------------------------------AGATAA--------------------------TATAAAT--------------ATAGA-------------------------------------------------GAGGTCTTCAAAA------AAAGTTCATGGTAC---TGCCACA---TGATCCTCCC----GGCAGGT--G----TGTGTGTTTGTTTGTGTGCCTGTGTGTGTGTGTGTGT--------GTGTGTGT--------------GTGTGTTTGCGTGTGTGT--GCG------------TGTG---CTTGTGTGTGTTGG-------------------T---TGGCG---GTATATAATGAG-CGTAACCAGTGGTTTAAGAAGTCAA------------------------------------------------------------------------------AGCCCAATC---GAAAGTTGAA-------CACGAG-A----------------------A-GCCGCAAAAGGCGA-----CAGAAAG--TGCATTTTG-AAATATA--TA-TTTT----------------------------T-TTTTCATATT--TTTTGTACGTTTT-GAA-AA-AGTT--TAA-----------------------------------------------AA-GTTGCGC-CCTTTTA-------------------------AGAATT-ASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................TGT--------GTGTGTGT--------------GTGTGTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510001000
droYak3
TCGAAAGTGACTGCTCCCCGAAGAT-----CCGA-------------------------------------------AGATAA--------------------------AATAAAT--------------ATAGA-------------------------------------------------GAGGTCTTCAAAA------AAAGTTCATGGTAC---TGCCGCA---AGATCCTCCC----GGCAGGT--G----TATG----------------------------------------------TGTGTGT-TGTTGG------TG-T----TGTGTGT--GCG------------TGTG---CTTGTGTGTGTTGG-------------------T---TGGCG---GTATATAATGAG-CGTAACTAGTGGCTTAAGAAGTCAA------------------------------------------------------------------------------AGCCCAATC---GAAAGTTGAA-------CACGAG-A----------------------A-GCCGCAAAAAGCGG-----CAGAAAG--TGCATTTTA-AAAA-TA--AT-TTTT----------------------------T-TTTCCTTATT--TTTTGTATGTTTT-AAA-ATC-------AA-----------------------------------------------AT-GTTGCAC-CCTTACT-------------------------CGAATT-TSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................GTGT-TGTTGG------TG-T----TGTGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19120.08100100000000
droEug1
TCGAAAGTGACTGCTCCCCGAAGAC-----CCG--------------------------------------------AGATAT-ATA-CA-----TC------TATA--TCTACATATA-----------GTAGA-------------------------------------------------TAGGTCTTCAGAAA----AAGAGTCCATGGTAC---GGACAGC---ATATCCTCCC----GGCACAC--G----TCTC----TG------------TGTGTGTGT--------------GTGTGTG--------TTGGACTGTGTGTGTGTGTCTGTGA--GTG------------TGTG---TGTGTGTGTGTTGG-------------------T---TGGCC---ATATAAAACAAG-CGTTGTCAGCGGCTCAAGAAGTCAA------------------------------------------------------------------------------AGCCCAGTC---GGAACTTGAG-------CTCGAAAA----------------------A-GCCGCA---------------AAAAG--TGCACTTTG-AGTTACG--CA-TTTT---CTGGTCTTTTTCTTTTCTTTTTTTTTTTTGTAATATT--TTTTGTAAGTTTTTGAA-GA---------------------------------------------------------AT-TTTG------------------------------------ACAACA-CSizeHit CountTotal NormTotal
No Reads
droBia1
TCGAAAGTGACTGCTCCCCGAAGAC-----CCG--------------------------------------------AGATC----------------------------ATACCT--------------ACAGA-------------------------------------------------GAGGTCTTCAGAA------AGAGTCCATGGTAC---TGCCGAC---ACATCCTCGC----GGCAGGT--G----TGTG----------------------------------------------TGTGTGT--------------G----TGTGTGTGT--GCG------------TGTG---CCTGTGTGTGTTGG-------------------T---TGGCC---GTATAAAACAGG-CGTAGCCCGCGGCTCAAGAAGCCAC------------------------------------------------------------------------------AGCCCCGGC---GAAACTTGAG-------CCCGAAAA----------------------A-GCCGCAA--AGCGG-----CGAAAAG--TGTTTTTTG-AGAAACC--CCATTTT------------------------------TTTCCACATTTTTTTTGTAAGTTTC-AAG-AATAGCC--A--TCAAG-TT---------------------TTCCAGTCC-----------TAT-----------TC-------------------------CCAGTT-TSizeHit CountTotal NormTotal
No Reads
droTak1
TCGAAAGTGACTGCTCCCCGAAGAC-----CCA--------------------------------------------AGATAA-ACA-TA-------------TATATC--TATATATA-TTGTATATATATAGA-------------------------------------------------GAGGTCTTCAGAAA-----AGAGTCCATGGTAC---TGCCAACATAATATCCTCCC----GGCAGGT--G----TGT--------------------------------------------------GTGTG--------------------------T--GCG------------TGTG---TTTGTGTGTGTTGG-------------------T---TAGCC---ATATAAAATAAG-CGGTACCAGTGGTTTAAGAAGTCAA------------------------------------------------------------------------------AGCCCAGTC---GAAACTTGAG-------CCCGAAAA----------------------A-GCCGCAAAAAGCGG-----CAAAAAG--TGCATTTCA-AAAA-CCCTCAATTTT------------------------------TTTCAATATTT-TTTTGTAAGTTTTTAAAAAACAGTTGAA--A-------------ATTTTTTTTAAATTTTCCCAGTCC-----------TACT----T----AC-TAAT-------------------------TT-TSizeHit CountTotal NormTotal
No Reads
droEle1
TCGAAAGTGACTGCTCCCCGAAGAC-----CCA--------------------------------------------AGATAT-ATA-TA-------------TATATCTATACAT--------------ATAGA-------------------------------------------------GAGGTCTTCAGAAA-----AAAGTCCATGGTACTACTGCCAAC---AGATCCTCCC----GGCAGGT--G----TGTG----------------------------------------------T--GTGTG--------------------------T--GCG------------AGTG---TGTGTGTGTGTTGG-------------------T---TGGTC---ATATAAAATAAG-AGCTACCAGTGGTTAAAGAAATCAA------------------------------------------------------------------------------AACCCAGTC---GAAACTTGAG-------CCCGAAAA----------------------A-GCCGGA--AAGCGG-----CA-TAAG--TGCATTTTA-AAAAACG--CAATTTT------------------------------TTTGCATATTT-TTTTGTAAGTTTTTTATAAATAGTTACA--ACAAGATTTTACA-ATTTTTAATAGATTTTCCCAAGTT-----------TATT----T-------TAAT-------------------------TT-TSizeHit CountTotal NormTotal
No Reads
droRho1
TCGAAAGTGACTGCTCCCCGAAGAC-----CCA--------------------------------------------AGATAT-ATA-TA-------------------AACACAT--------------ATAGA-------------------------------------------------GAGGTCTTCAGCA------AAAGTCCATGGTACTACTGCCAAC---ATATCCTCCC----GGCAGGT--G----TGTG----------------------------------------------T--GTGTG--------------------------T--GCG--------------TG---TGTGTGTGTGTTGG-------------------T---TGGCC---ATATAAAATAAG-AGCTATAAGTGGCTAAAGAAATCAA------------------------------------------------------------------------------ACTCCAGTC---GAAACTTGAG-------CCCGAAAA----------------------AGGCCGG--AAAGCGG-----CAAAAAG--TGCATTTGTAAAAAATA--CA-TTTT------------------------------TTTCCAAGTT--TTTTTTAAGTTTT-AAT-AATAGTTGCA--AGAAGTTTTTACACACT---------TTTTCGCAGATT-----------TATT----T-------TAGT-------------------------TT-TSizeHit CountTotal NormTotal
No Reads
droFic1
TCGAAAGTGATTGCTCCCCGAAGAC-----CCG--------------------------------------------AGCTAT-ATA----------------------AATAAAT--------------ATAAA-------------------------------------------------GAGGTCTTCAGAAA-----AAAGTCCATGGTAC---TGTCTAA---AGATCCTCCA----GTCAGGT--G----TGTG----------------------------------------------T------------------------------------GTG--------------TG---TGTTTGAGTGTTGG-------------------T---TGGCC---GTATAAAACGCG-ACTTAGCAGTGGCCTTTGAAGTCAA------------------------------------------------------------------------------AACTCATTC---GAAACTTGAG-------TTCGAAAA----------------------A-GCCGCAAAAATCGT-----TA-AAAG--TGCCTCTAA-GAAT-CT----------TTTTTATTT--------------------GTTTAATATT--TTTTGTAAGTTTTTGAA-AG-AGTT-----------TT---------------------TTTTTGTCTTTTTTTTAA--TG-------ATTTGTT-------------------------AATATT-TSizeHit CountTotal NormTotal
No Reads
droKik1
TCGAAAGTGACTGCTCCCC-AAGAC-----CCGG------------------------------------AGACCGGAGATACTATA-TACACGACCG------ATA----------TT-TTGTATAT--ATAAA-----------------------------------------------------------GGA------AAAGTTCATGGTAC---TG----G---AGATGCTCCT----CGCAGGT--G----TGTG----------------------------------------------T----GTG--------------------------T--GTGTGTGTCTGTGTGTGTTCTGCGTGTGTGTGCTGC----------CTGGCTGCGT---TGGCC---GTATAAAG-GCG-AGTTGCCAGCGGCTAAATAAGTTAA------------------------------------------------------------------------------ACGTCAGTT----AAGCGCCAG-------TACAAAAA----------------------C-GCCGCAGAGAGCGGG----TGAAAAG--TGCTCT-------------CAGTTTCTTTTTTATTTATATATATTATTT-T-TTTTTTTT-----------AATATTTTTT-TAA-CC---------------------------------------------------------AT-TTT----T-TGTGCC-------------------------AGAGTT-TSizeHit CountTotal NormTotal
No Reads
droAna3
TCGAAAGTGACTGCTCCCCACACAC-----AAGA-------------------------------------------AGCCAA--------------------------G-------TTA--GCAAGTCACCAAGGAGGCCCCCCTTGTATTGTATTTTTCTCATAAAAAAATAAAT------------------AT------AAATTTTTTGAATC---TGCCAC----AGATCCTG-T----GCTGGGT--C----TGTCAG--TG----------------------------------------T--GTGTG--------------------------T--GTG------------TGTG---TATCTGTGTGTTGG-------------------T---CAGCTGATGTATAAAAAGAG-AGCCACCAGCCCGAAAAGAAGTTAA------------------------------------------------------------------------------AAGCAAGAC--TCAAGCTCAAG-------CCTAAAAA----------------------A-GCCGCAA--AGCGGTTGCCGAAAAAG--TGCATT--------------A-TT------------------------T-T-TTT-TTTCAATTTTT-TTATGTAAGTTTTT----------------------------------------------------------------------------------TTTTTAGCCAGCCATGGCC-CAGACACACA-CSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................CAG--TG----------------------------------------T--GTGTG--------------------------T--GTG------------TGTG---TA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.331000010
......................................................................................................................................................................................................................................................................AG--TG----------------------------------------T--GTGTG--------------------------T--GTG------------TGTG---TA............................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102000002
.............................................................................................................................................................................................................................................................C----TGTCAG--TG----------------------------------------T--GTGTG--------------------------T--G...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17120.081000100
.....................................................................................................................................................................................................................................................................CAG--TG----------------------------------------T--GTGTG--------------------------T--GTG------------TGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000001
droBip1
TCGAAAGTGACTGCTCCCCACACAC-----AAGA-------------------------------------------AGCCAA--------------------------G-------TTA--GCAAGTCACCAAGGAGGCCCCCCTTGCATTGTATTTT---CA-AAAAAAATATATATTATTCGAGTTTTCGAACA------AAACT----GAATC---TGCCAC----AGATCCTG-------GGCTGT--C----TCTG------------------------------------------TGTCTGTGTG--------------TGCCT----GTTTGT--GTG------------TGTG---TGTGTATGTGTTGG-------------------C---CAGCTGATGTATAAAAAGAG-AGCCACCAACCCGAAAAGAAGTTAA------------------------------------------------------------------------------AAGCCAGAT--TCAAGCTCAAG-------CCTAAAAA----------------------A-GCCGCAA--AGCGGTTGCCGAAAAAG--TGCATT--------------A-TTTT------------------------------TTTCAATTTT--TTTTTTATTTTTT-AGC-C--------------------------------------------------------------------------------------A--CATGGCCACAAACACACACASizeHit CountTotal NormTotal
No Reads
dp5
TCGAAAGTGACTGCTCTCTCAATAT-----CCCAGACCCAAGCAGAGACCGAGAC------TGAGACCGGAGACCGGAGCCCCC-TCGAAGACGACCAAGAGG-------------------------------C-------------------------------------------------GACATTTC------------CAGTTCATGGTAC---CCTCCAC---ATATCCTACGAAACAGCAA--CTACATC----TGCACATCTGTAT--CTAAATCCATGTCTCCGGGTGTACATACATATAT--------------GTGTGCTTGGGCAGGAGT--GTG------------TATG---TGTGTGTGTGTTGG----------A--------TTCATAGTC---ATATAAAGACAG-AGGTCCATGCGGATCA---------------------------------------------------------------------------------------TTCCATGTCTGT--------CG-------TTCGAAGA----------------------A-ACAATCGGGACCGG-----CAAAAAG--TGCATCGGG-AAAT-TA----------TTCGAGTATATGTATGTTATATCTTT--------TTTTT--TTGCGTACATTTT-----------------------------------------------------------------T-GTTTTTC-CAGTGTTTAAT-------------------------TC-ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................AGAGACCGAGAC------TGAGACCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3310000000001
.........................................................................................................................................................................................................................................................................................................................................................GTG------------TATG---TGTGTGTGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510100000000
droPer2
TCGAAAGTGACTGCTCTCTCAATAT-----CCCAGACCCAAGCGGAGACCGAGACTGAGACTGAGACCGGAGACCGGAGCCCCC-TCGAAGACGACCAAGAGG-------------------------------C-------------------------------------------------GACATTTC------------CAGTTCATGGTAC---CCTCCAC---ATATCCTACGAAACAGCAA--CTACATC----TGCACATCTGTAT--CTAAATCCATGCCTCCGG--------GTGTATAT--------------GTGTGCTTGGGCAGGAGT--GTG------------TATG---TGTGTGTGTGTTGG----------A--------TTCATAGTC---ATATAAAGACAG-AGGTCCATGCGGATCA---------------------------------------------------------------------------------------TTCCATGTCTGT--------CG-------TTCGAAGA----------------------A-ACAATCGGGACCGG-----CAAAAAG--TGCATCGGG-AAAA-TA----------TTCGAGTATATGTATGTTATATCTTTTT-TT-----------TGCGTACATTTT-----------------------------------------------------------------T-GTTTTTT-CAGTGTTTAAT-------------------------TC-ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................CCCAAGCGGAGACCGAGACTGAGACTGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.003300000
......................................CAAGCGGAGACCGAGACTGAGACTGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002200000
..................................GACCCAAGCGGAGACCGAGACTGAGACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
......................................CAAGCGGAGACCGAGACTGAGACTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..............................................GACCGAGACTGAGACTGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1860.503300000
droWil2
TCGAAAGTGACTGCTCCGTAGG-CTGTAAGGCAA-------------------------------------------AAATAA--------------------------AA------TCA--ACAATTCCTCTAAGAAACA----------------------------------------------------------------AATACA--AAAT---TAA-AG----AAAACCTA-T----AGTAGACCTA------T------------AT--CTACATA------------------------TATATA--------------TATAT----ATA--T--ATATA----------TATA---TGTATATATATCGAGATATATACAA--------T---GTA------TATATT---------AGCTACTACTTTGACA-GTTCC-----------------------------------------------------------------TTTTAAAGTGTTTTTTGGTGTTTTT--------TAGTTTTAGTTA----AATCAACAAGAAA----------A-AAAATTA-AAGT----GCCAAACATA--TACAT---------------A-TT------------------------T-T-TTT-TTTTAATTTT--TTTCTTTTTTTTT-----------------------------------------------------------------T-CCTTTTG-GAAAATTTGGC------T--AATAGACGGGTACACACT-CSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............TCCGTAGG-CTGTAAGGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
..........................TAAGGCAA-------------------------------------------AAATAA--------------------------AA------TCA--ACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50101000
droVir3
GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G----TGTC----TG----------------------------------------C--TTGTG--------------------------TGTGCG--------------TG---TGTGTGTGTGTGGA-------------------T--ATGGGC---ATATAAAGGCAGCCGCCACAAGTGCC----------GCGACTTCATTGCATATGCGACGCGAAGAA-AATCAAAACTAAAAAACAAATTCAAAAA-CTTAAAAAATAAATAAAAAATAAA----GTTT--------TGAAAAAAA-----------------AAATAAAAGAAAAACACCGCATAAAGCGG-----CAA--AGTGCAAGCTTAT-AAAA-TT---A-TTTA--------------------TTTA------TT----TTT---TTTT---GGTTTT-------------------------------------------------------------------GTT----T-------TTTT-------------------------TT-CSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................TGTGCG--------------TG---TGTGTGTGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000100000000000000000000000000000000000000000000000000000
droMoj3
GTGTGTGTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGT--------------GTGTGTATGCGTGTATGC--GTG------------TGTG---CATGTGTGTGTAGG----------A--------T---TGGCC---ATATAGAGGCCGCCGCTACAAGTGCC----------GCGACTTAATTGAACTTGCCACGCGAACAAAAAACAAAACTACAAAA-ATTTTCACAAAATTTTCAAATTTAAGAAAATTTTAAATGTGTAC--------TGAAATTAA-----------------ATTTAAAAACA----------------------------GA--TAG-----------------A-TT------------------------C-T-TTA-TTTTA----------AATATTTTTT------------------------------------------------------------------TTTT----T-------TGTT-------------------------TT-CSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT--G----TGTG----TA----------------------------------------T--GTGTG--------------------------T--GTG------------TGTG---TATGTATGTGCAGG-------------------G---AGGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 01:43 PM