ID:

dsi_20595

 Coordinate:

3l:2026724-2026994 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [3l_2026995_2027170_-]; CDS [3l_2026995_2027170_-]; exon [3l_2025059_2026723_-]; CDS [3l_2025059_2026723_-]; intron [3l_2026724_2026994_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTGTCTATGAGACGGGTCCTGTGGCCCCGGCCAGCGAATTCAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAACCACCGACTACTATGCATTATCCTCCACGATCACCTACAACTCTTTCAATCTACTCCGATCTATTCTATCTTTCTTTTCGACTCTGTTAACTTACTTTACTATCGATCAATATAATAAACCAAACTTTTGTGAATTTTCTCCTCTCATGATGTCAACGTCGTTCGTTCTTTCGTTTCGCTTTGCTCATTCCACGGGTTATCAACACTCCATCCTGAAACAAAAAACACATTGAAACCGATTCAGGTGCAGAATCAAGGTCAGAACAGCGAAAACCAACAGTCGTACCAGAACAG
**************************************************(((((((((((((((.((..............)).))).)))))).(((......))).................(((......))).............................))))))......((((.(((((..................(((((............((((((....))))))............))))).............((((...............)))).............)))))...))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
...................................................................................................................................................................................................................................................................................................................................GCAGAATCAAGGTCAGAAC............................. 19 0 1 1.00 1 0 1 0 0
...........................................................................................................................................................................................................................................................................................................................................................AAACCAACAGTCGTACCAGAAC.. 22 0 1 1.00 1 0 1 0 0
................................................................................................................................................................................................TAAACCAGACTGTTATGAATT.............................................................................................................................................................. 21 3 3 0.67 2 2 0 0 0
................TCCTGTCGCCCCGACCA.................................................................................................................................................................................................................................................................................................................................................. 17 2 19 0.63 12 0 0 12 0
...........TCGGGTCCTGTCGCCCCTGCCA.................................................................................................................................................................................................................................................................................................................................................. 22 3 2 0.50 1 1 0 0 0
.....................................................................................TACTATGCCATCTCCTCCACGA........................................................................................................................................................................................................................................................................ 22 3 2 0.50 1 1 0 0 0
..........GACGTGTCGTGTGACCCCGG..................................................................................................................................................................................................................................................................................................................................................... 20 3 3 0.33 1 1 0 0 0
..........GACGTGTCGTGTGACCCC....................................................................................................................................................................................................................................................................................................................................................... 18 3 17 0.29 5 5 0 0 0
...............GTCCTGTCGCCCCGACCA.................................................................................................................................................................................................................................................................................................................................................. 18 2 4 0.25 1 1 0 0 0
..........................................................................................................................................................................................................................................................................................................AAAACAAATTGAAACCGAGTAA................................................... 22 3 9 0.22 2 2 0 0 0
.................................................................................................................................................................................................AAACCAGACTTTGATGAATTT............................................................................................................................................................. 21 3 8 0.13 1 1 0 0 0
...................................................................................................................................................................................................................................TGTCAACCTCGTTCGTC............................................................................................................................... 17 2 10 0.10 1 0 0 1 0
....................................................................................................................................................................................................................................................................................................................CAAACCGATTCAGGTGG.............................................. 17 2 14 0.07 1 0 0 1 0
...................................................................CAATATAGAACTACCGACT............................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 1

Anti-sense strand reads

AACAGATACTCTGCCCAGGACACCGGGGCCGGTCGCTTAAGTTTTGGCTTCATTCACACGTACACGAGTTATAGATTGGTGGCTGATGATACGTAATAGGAGGTGCTAGTGGATGTTGAGAAAGTTAGATGAGGCTAGATAAGATAGAAAGAAAAGCTGAGACAATTGAATGAAATGATAGCTAGTTATATTATTTGGTTTGAAAACACTTAAAAGAGGAGAGTACTACAGTTGCAGCAAGCAAGAAAGCAAAGCGAAACGAGTAAGGTGCCCAATAGTTGTGAGGTAGGACTTTGTTTTTTGTGTAACTTTGGCTAAGTCCACGTCTTAGTTCCAGTCTTGTCGCTTTTGGTTGTCAGCATGGTCTTGTC
**************************************************(((((((((((((((.((..............)).))).)))))).(((......))).................(((......))).............................))))))......((((.(((((..................(((((............((((((....))))))............))))).............((((...............)))).............)))))...))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
........................GGGGCCGGTCGCTTAAGC......................................................................................................................................................................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................ATTTGTTAGGAAGGACTTTGT.......................................................................... 21 3 4 0.50 2 0 2 0 0 0 0
...................................................................................................................................................................................................................................................................................TATTTGTTAGGAAGGACTTTGT.......................................................................... 22 3 2 0.50 1 0 1 0 0 0 0
...............................................................................................................................................................................TGATAGCTAGTTATC..................................................................................................................................................................................... 15 1 6 0.50 3 0 0 2 1 0 0
............................................................................................................................................................................................TATTATTTGGTGTGAAAATGC.................................................................................................................................................................. 21 3 4 0.25 1 0 0 0 0 0 1
.............................................................................................................................................................................AGTGATAGCTAGTTA....................................................................................................................................................................................... 15 1 14 0.21 3 0 0 1 2 0 0
............................................................................................................................................................................................................................................................................................GGTAAAACTTTGTTTTTTGCGT................................................................. 22 3 5 0.20 1 0 1 0 0 0 0
......................AGGGGGCCGGTCGCTTAAGC......................................................................................................................................................................................................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................TTGGCTAAGTCCACGTTTGAT........................................ 21 3 5 0.20 1 0 1 0 0 0 0
..........................................................................................ACGCAATAGGGGGTGCT........................................................................................................................................................................................................................................................................ 17 2 11 0.18 2 0 1 0 0 1 0
...............................................................................................................................................................................................................................................................................................AGGACTTTGTGTATGGTGTA................................................................ 20 3 6 0.17 1 0 0 1 0 0 0
..........................................................................................AAGCAATAGGGGGTGCTAG...................................................................................................................................................................................................................................................................... 19 3 14 0.14 2 2 0 0 0 0 0
............................................................................................GCAATAGGGGGTGCTAG...................................................................................................................................................................................................................................................................... 17 2 7 0.14 1 1 0 0 0 0 0
..................................................................................................GCAGGTGCTAGTGGA.................................................................................................................................................................................................................................................................. 15 1 8 0.13 1 0 0 0 0 1 0
................AGGGCCCCGGGGACGGTCGC............................................................................................................................................................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 1 0 0 0
.........................................................................................................................................................................................................................................GCAGCAATCAAGAAA........................................................................................................................... 15 1 9 0.11 1 1 0 0 0 0 0
.......................................................................................................TACTAGTGGATGTTGGGAG......................................................................................................................................................................................................................................................... 19 3 11 0.09 1 1 0 0 0 0 0
...........................................................................................................................................TAGGATAGAAAGAAA......................................................................................................................................................................................................................... 15 1 19 0.05 1 0 0 0 1 0 0
....................................................................................................AGGTCCTAGTGGGTATTGA............................................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 1 0 0 0
...........................................................................................................................................................................................AGATTATTTGGTTTGATA...................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 1 0
...........................................................................................................................................................................................AGATTATGTGGTTTGA........................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:2026674-2027044 - dsi_20595 TTGTCTATGAGACGGGTCCTGTGG---------CCCC------------------------------------GGCCAGCGAATTCAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CACCGA----------------------------CTA------C--TATGCATTATCCTCC----ACGA-TCACCTA-----------------------------------------------------------------CAACTCT--TT--------------------CAA--------------------------------------------TC------------------------------------------------------TACTCCGATCTATT-----C-------TA---------TCTTT---CT---TTTCGACTCTGTTAAC-----------------------------TTA----CTTTACT------ATCG-----------ATC-AATATAATAAACCAAA-C-----TTTTGTGAAT-TTTCTCCTCTCAT-GAT----GTCAACGTCGTTCGT-TCTTTC-------------G-TTTCGCTTTGCT-----CATTCCAC--------G-GGTTAT-CA--A---------------------------------------------CA------------------CTCC---ATCCTGAAAC---------------------AAAA-------------------------------------AACACATTGAAA-------------------CCGATTCAGGTGCAGAATC----------------------------------------------------AAGGTCAGA------------ACAGCGAAAAC----CAACAGTCGTACCAGAACAG
droSec2 scaffold_2:2154282-2154655 - TTGTCTATGAGACGGGTCCTGTGGCCC------CTGT------------------------------------GGCCAGCGAATTCAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CACCGA----------------------------CTA------C--TATGCATTATCCTCC----ACGA-TCACCTA-----------------------------------------------------------------CAACTCT--TT--------------------CAA--------------------------------------------TC------------------------------------------------------TACTCCGATCTATT-----C-------TA---------TCTTT---CT---TTTCAACTCTGTTAAC-----------------------------TTA----CTTTACT------ATCA-----------ATC-AATATAATAAACCAAA-C-----TTTTGTGAAT-TTTCTCCTCTCAT-GAT----GTCAACGTCGTTCGT-TCTTTC-------------G-TTTCGCTTTGCT-----CATTCCAC--------G-GGTTAT-CA--A---------------------------------------------CA------------------CTCC---ATCCTGAAAC---------------------AAAA-------------------------------------AACACATAGAAA-------------------CCGATTCAGGTGCAGAATC----------------------------------------------------AAAGTCAGA------------ACAGCGAAAAC----CAACAGTCTTACCAGAACAG
dm3 chr3L:2128711-2129103 - TTGTCTATGAGACGGGTCCTGTGG---------CTCC------------------------------------GGCCAGCGAATTCAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CACCGA----------------------------CTA------C--TATGCATTATCCTCC----ACGA-TCACCTA-----------------------------------------------------------------CAACTCT--TT--------------------CAA--------------------------------------------TC------------------------------------------------------TACTCCGATCTATT-----T---T-TCTA---------TCTTT---CT---TTTCGACTCTGTTAAC-----------------------------TTACTTACTTTACT------ATCG-----------ATC-AATATAATAAACCAAA-C-----TTTTGTGAAT-TTTCTCCTCTCAT-GAT----GTCAACGTCGTTCGT-TCTTTC-------------G-TTTCGCTTTGCT-----CATTCCAC--------G-GGTTAT-CA--A---------------------------------------------CA------------------CTCC---ATCCTGAAAC---------------------AAAA--------------AA------------AAAACAAAAAACACATTGAAACC------AA---------CCGATTCAGGTGCAGAAAC----------------------------------------------------AAATTCAGA------------ATAGCGAAAAC----CAACAGTCGTACCAGAATAG
droEre2 scaffold_4784:2122606-2122976 - TTGTCTATGAGGCGGGTCCTGTGG---------CTCC------------------------------------GGCCAGCGAATTCAAAACTGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CAACGA----------------------------CTA------C--TATGCATTATCCTCC----ACGA-TCACCTA-----------------------------------------------------------------CAACTCT--TT--------------------CAA--------------------------------------------TC------------------------------------------------------TACTCCGATCTATT-----C-------TA---------TCTTT---CT---TTTCGACTCTGTTAAC-----------------------------TTA----CTTTACT------ATCG-----------ATC-AATATAATAAACCAAA-C-----TTTTGTGAAT-TTTCTCCTCTCAT-GAT----GTCAACGTCGTTCGT-TCTGTC-------------G-TTTCGCTTTGCT-----CATTCCAC--------G-GGTTTG-CA--A---------------------------------------------CA------------------CTCC---ATCATGATAC---------------------AAAA-------------------------------------AATACATTGAAA-------------------CCGATTCAGGTGCAGAATC----------------------------------------------------AAAATCAGA------------ACAGCGAAAAC----CAACAGTCCTACCAGAACAG
droYak3 3L:2081596-2081967 - TTGTCTATGAGACGGGTCCTGTGG---------CTCC------------------------------------GGCCAGCGAATTCAAAACTGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CACCGA----------------------------CTA------C--TATGCATTATCCTCC----ACGA-TCACCTA-----------------------------------------------------------------CAACTCT--TT--------------------CAA--------------------------------------------TC------------------------------------------------------TACTCCGATCTATT-----C-------TA---------TCTTT---CT---TTTCGACTCTGTTAAC-----------------------------TTA----CTTTACT------ATCG-----------ATC-TATATAATAAACCAAA-C-----TTTTGTGAAT-TTTCTCCTCTCAT-GAT----GTCAACGTCGTTCGT-TCTTTC-------------G-TTCCGCTTTGCT-----CATTCCAC--------G-GGTTTG-CA--A---------------------------------------------CA------------------CTCC---ATCATGACAC---------------------AAAA--------------AT----------------------AAACATTGAAA-------------------CCGATTCAGGTGCCGAAAC----------------------------------------------------AAAGTCAGA------------ACAGCGATAAC----CAACAGTCGTACCAAAGCAG
droEug1 scf7180000409091:144165-144547 + TTGTCTATGAGACGGGTCCCGTGG---------CTCC------------------------------------GTCCAGCGAATTCAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CACCGA----------------------------CTA------C--TATGCATTATCCTCC----ACGA-CCACCTT-----------------------------------------------------------------CAACTCT--TT--------------------CAA--------------------------------------------TC------------------------------------------------------TTCTCCGATCTATT-----C-------TA---------TCT--CTTCT---TTTCGACTCTGTTAAC-----------------------------TTA----CTTTAAT------ATCG-----------ATC-AATATAATAAACCAAA-C-----TTTTGTGAAT-TTTCTCCTCTCAT-GAT----GCCAACGTCGTTCGT-TCTTTC-------------G-TTTCGCTTTGCT-----CATTCCAC--------G-GGTTCT-CC--A---------------------------------------------CA------------------CTCC---ATCATCTCAC---------------------AAAA--------------A------------------------TACACTGAAA-------------------CAGATTCAGGTGCAGAATC----------------------------------------------------AGATTCAGATTCCGAATCAAAACAGCGAAAAC----CAACAGTCGTACCAGAACAG
droBia1 scf7180000302428:8852606-8852998 - TTGTCTATGAGACGGGCCCCGTGGCAGCTGTGGCCCC------------------------------------ATCCAGCGATTTCAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CACCGA----------------------------CTA------C--TATGCATTATCCTCC----ACGACTCACCTT---------------------------------------------------------------TACAACTCT--TT--------------------CAA--------------------------------------------TC------------------------------------------------------TACTCCGATCTATT-----C-------TA---------TCT--CTTCTT--TTTCGACTCTGTTAAC-----------------------------TTA--TAATTTAAT------ATCG-----------ATC-AATATAATAAACCAAA-C-----TTTTGTGAAT-TTTCTCCTCTCAT-GAT----ATCAACGTCGTTCGT-TCTTTC-------------G-TTTCGCTTTGCT-----CATTCCAC--------G-GGTTTG-CC--A---------------------------------------------CACC-A------CCTA----CTCC---ATCATCACAC---------------------AAAA--------------A------------------------TACACTGAAA-------------------ACGATTTAGAACCCGAATC----------------------------------------------------ATACTCAGA------------ACGGCGAAAAC----CAACAGTCGTACCAGAGCAG
droTak1 scf7180000414400:60495-60879 - TTGTCTATGAGACGGGTCCTTTGG---------CCCC------------------------------------GGCCAGCGATTTCAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CACCGA----------------------------CTA------C--TATGCATTATCCTCC----ACGATTCACCT---------------------------------------------------------------------------------------------------A--------------------------------------------TC------------------------------------------------------TACTCCGATCTATT-----C---TATCTA---------TCT--CTTCTTT-TTTCGACTCTGTTAAC-----------------------------TTATATACTTTAAT------GCCG-----------ATC-AATATAATAAACCAAA-C-----TTTTGTGAAT-TTTCTCCTCTCAT-GAT----GTCAACGTCGTTCGT-TCTTTC-------------G-TTTTGCTTTGCT-----CATTCCAC--------G-GGTTTA-CC--A---------------------------------------------CAC--A-CTACCTACTGCTACTCC---ATCATCATAC---------------------AAAA--------------ATACA-------CTGAA-----------ACTGAAA-------------------CTGAAGCAGGTTCAGAATC----------------------------------------------------AAAATCAGA------------ACAGCGA----------ACAGTCGTACCAGACTAG
droEle1 scf7180000491249:3364437-3364829 + TTGTCTATGAAACTGGTCCAGCTGTGG------CTCC------------------------------------GTCCAGCGATTTCAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CACCGA----------------------------CTA------C--TATGCATTATCCTCC----ACGA-TCACCTA--------------------------------------------------------------CTACAACTCT--TT--------------------CAA--------------------------------------------TC------------------------------------------------------TACTCCGATCTATT-----C-------TA---------TCT--CTTCTTTTTTTCGACTCTGTTAAC-----------------------------TTA----CTTTTAA------ATTG-----------ATC-AATATAATAAACCAAA-C-----TTTTGTGAAT-TTTCTCCTCTCAT-GAT----ATCAACGTCGTTCGT-TCTTTC-------------G-TTTCGCTTTGCT-----CATTCCAC--------G-GGTTTG-CC--A---------------------------------------------CA------------------CTCCTTCATCATCACAC---------------------ACAA-CAAAAACAAAAAAAC----------------------ACACAACGAAA-------------------CCA--------GCAGAATCAGAATG----------------------------------------------GAAACCAA---------------AACGGAACC----CAACAGTCGTTCCAGAGCAG
droRho1 scf7180000779211:58464-58836 - TCGTGTATGAGACGGGTCCAGTGG---------CTCC------------------------------------GTCCAGCGAATTCAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CACCGA----------------------------CTA------C--TATGCATTATCCTCC----ACGA-TCACCTA-----------------------------------------------------------------CAACTCT--TT--------------------CAA--------------------------------------------TC------------------------------------------------------TACTCCGATCTATT-----C-------TA---------TCT--CTTCTT--TTTCGACTCTGTTAAC-----------------------------TTA----CTATAAT------ATCG-----------ATC-AATATAATAAACCAAA-C-----TTTTGTGAAT-TTTCTCCTCTCAT-GAT----GTCAACGTCGTTCGT-TCTTTC-------------G-TTTCGCTTTGCT-----CATTCCAC--------G-GGTTTA-CC--A---------------------------------------------CA------------------CTCC---ATCATCACAC---------------------AAAA--------------AA----------------------ACACAATGA-A-------------------CCGATTCAGGTGCCGAATC----------------------------------------------------AGAATGGGA------------ACAGTGGAACC----CAACAGTCGTTCCAGAGCAG
droFic1 scf7180000453052:931242-931632 + TCGTGTATGAGACCGGGCCAGTGG---------CGCC------------------------------------AGCCAGCGAATTCAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----TACCGA----------------------------CTA------C--TATGCATTATCCTCC----ACGA-TCACCTG-----------------------------------------------------------------AAACTCT--TT--------------------CAA--------------------------------------------TT------------------------------------------------------TACTCCGATCTACT-----C-------TA---------TCT--CTTCT---TTTCGACTCTGTTAAC-----------------------------TTA----CTTTAAT------ATCG-----------ATC-AATATAATAAACCAAA-C-----TTTTGTGAAT-TTTCTCCTCTCAT-GAT----GTCAACGTCGTTCGT-TCTTTC-------------G-TTTCGCTTTGCT-----CATTCCAT--------G-GGTTTT-CCGAA---------------------------------------------CA------------------CTTC---ATCATCACAC---------------------AAAAACAAAAACAAACAAAC--------------------AAACAAACTGAAA-------------------CCGATTCAGGTGCAGAATC----------------------------------------------------AAAACCAGA------------ACAGCGAAACT----CAACAGTCGTACCAGAGCAG
droKik1 scf7180000302441:1676587-1676997 + TTGTCTATGAGACGGGTCCCGTCCAGA------TACC------------------------------------TTCTAGCGATTTCAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CACCTA----------------------------CTACGACTTCTATATGCATTATCCTCC----TCGA-TCACCT-------------------------------------------------------------------------------------------------CAA--------------------------------------------TC------------------------------------------------------TACTCCGAACTATTCTGTTCTAT--TTTA--C------TCT--CTTC-----TTTGACTCTGTTAAC-----------------------------TTA----CTTTTAA------TTCG-----------ATC-AATATAATAAACCAAATC-----TTTTGTGAAT-TCTCTCCTCTCAT-GAT----GTCAACGTCGTTCGT-TCTTTC-------------G-TTTCGCTTTGCT-----CATTCCAC------ATG-GGTTTT-CC--A---------------------------------------------CACC-A-CCA------------CC---ACCACCACAC-------CATC----C-----AAAA--------------AC----------------------ATACACTGAAACCAAAATCGAAACTGTAAACAGATTCAGACTCCGACTC----------------------------------------------------AGACTCAG---------------AGCGAGCCA----CAGCCGTCGTTCGAAAACAG
droAna3 scaffold_13337:701522-701907 + TAGTTTATGAGACAAAGCCGGCAG------------C------------------------------------AGCCAGCGAATTCAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CACCGG----------------------------TT-------C--TATAAACTGTTCTCCAACCACGA-TCACCTT-----------------------------------------------------------------CAAATCT--TT--------------------C----------------------------------------------TA------------------------------------------------------TACTCTGTTCTATA-----C-------T-----------CTTTCT--T---TTTCGACTCTGTTACT-----------------------------TTT--TAATTT--T------ATCG-----------ATATTGTATAATAAACCAAAAC-----TCTTGTGAAC-TCTCTCCTCTCAT-GAT----GTCAACGTCGTTCGT-TCTTTC-------------G-TTTTGCTTTGCTCCGCTCACTCCAAAAA-CAA-T-GGTTCCTCC-AA---------------------------------------------AA--------CTCA--------------AAACCACAC-------TACACCA--AACTC----------------------------GCATAAA-----------------ACC------AAAC-------ACGATACAGGCCCAGAATC----------------------------------------------------AAGCCCAGA------------CACCCGA----------TCAATCCTACCAGAGCAG
droBip1 scf7180000395155:55700-56089 - TAGTTTATGAAACAAAGCCGGCAG------------C------------------------------------AGCCAGCGATTTCAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CACCGA----------------------------GTT------C--TATAAACTATTCTCCAACCAAGA-TCACCTT-----------------------------------------------------------------CAAATCT--TT--------------------CT----------------------------------------------A------------------------------------------------------TACTCTGTTCTATA-----C--------------------TTT---CT---TTTCGACTCTGTTACT-----------------------------TTT--TAA-TTCTT------ATCG-----------ATATTGTATAATAAACCAAAAC-----TTTTGTGAAC-TCTCTCCTCTCAT-GAT----GTCAACGTCGTTCGT-TCTTTC-------------G-TTTTGCTTTGCTCCGCTCACTCCAAAAC-CAA-T-GGTTCTTCC--A---------------------------------------------A--AA--AAACTTA-------------AAAACCACAC-------TACACCAA-AACTC----------------------------GCCTAAT-----------------ACC------AAAC-------ACGATACAGGCCCAGATCC----------------------------------------------------AAGCACAGA------------CTCCCGA----------TCAGTCGTACCAGAGTAG
dp5 XR_group6:12035692-12036214 - TTGTGTATGAGACCACGCCCACAC---------CCAC------GCCCA------------CGACAG------CCTTGAGCGATTTTAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CAAGAACCAACCACCGATCCA-----------A-CGA-----TC--AATGCATTATCCTTCAAA-AAGA-TCACCTATAAACACATAAAGATTTCATCTTTGATTC--------------------GATTGG------------ACTCTGATT--------------------CGA--------------------------------------------TC-------TATACT--TCGAT--------TCT-AAAACTATTCTA----------AACT-----CTATT-----C-------TA--ATCTAAATCT--ATTCTTC-TTTCGACGCTGTTAAG-----------------------------TTT--ACA-TACGAAAAAAAAAAGAAAAAACCAAAAAA-AAATTAATAAACAAAAACCTTTTCTTTGTGAATCTTTCTTCTCTCAA-TCTCTCAATCAACGTCGCTCGTGTCCTTCCTCCGCTCGATTGGTTTTCGCTTTGAT-----CATTCCAC--------A-CGCCCA-CA--A----------------------------------------------ACGC--CC------------------AC--------AAACGCCCACACAT--ACAAC----------------------------CACAA-------------------------------------------------------------------CCACTCATCGTGCCACACATTCTCATGG--------CAGAAGCAGCCAC-----------------AGCAGG-AG----GCACAGTCGTATCAGAGCAC
droPer2 scaffold_33:56807-57363 - TTGTGTATGAGACCACGCCCACGG---------CCGCGCCCACGCCCATCGCCACGGCCGCGACAGCATCGGCCTTGAGCGATTTTAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CAACAACCAACCACCGATCCA-----------A-CGA-----TC--AATGCATTATCCTTCAAA-AAGA-TCACCTATAAACACATAAAGATTTCATCTTTGATTCGATTCGATTCGATTCGATTCGATTGG------------ACTCTGATT--------------------CGA--------------------------------------------TC-------TATACT--TCGAT--------TCT-AAAACTATTCTA----------AACT-----CTATT-----C-------TA--ATCTAAATCT--ATTCTTT-TTTCGACGCTGTTAAG-----------------------------TTT--A-CAA-------AAAAAAGAAAAAAC---AAAA-AAATTAATAAACAAAAACCTTTTCTTTGTGAATCTTTCTTCTCTCAA-TCTCTCAATCAACGTCGCTCGTGTCCTTCCTCCGCTCGATTGGTTTTCGCTTTGAT-----CATTCCAC--------A-CGCCCA-CA--A----------------------------------------------ACGC--CC------------------AC--------AAACGCCCACACAT--ACAAC----------------------------CACAA-------------------------------------------------------------------CCACTCATCGTGCCACACATTCTCATGG--------CAGAAGCAGCCAC-----------------AGCAGG-AG----CCACAGTCGTATCAGAGCAC
droWil2 scf2_1100000004729:1266988-1267446 + TTGTGTATGAGACGACGCCGGTGGCGG------TTGC------------------------------------AGCAAGTGAATTCAAAACTGAAGTAAGTGTGCATGTGCTCAATATCTAAA-----AGAAAAGAAAAAAAACATATATCTCTCCTCACATAGC------C--TATGTTTTATCTTTA----AAAA--AATCTA----------AAATT------------------------------------------------TTCAACACT--ATCTCTATTTCTAAATCTATATCTAAATA-------------------------------------------------------------------------------------------------------------T-----C-------TA---------T-------C----TATTGACTATGTTACA-----AAAA--------------------TTA----TTTG-------------------------CA-AATTTAATAAACCAAA-A-----TTTTGTGAAT-TCTCTTCTCTCAT-GAT----TTCAACGTCGTTCG-----------------------TTTCGCTTTGCT-----CATTACAC------ATG-GGTTTC-CCTACCATTCAACTCATCACCTCAACTCAACTCAACTCAAATCAACTCAACTCAA--CTACATA--------------T--ATAT--A--TTCACACACAT--ACTAC--AT--------------ATAT----ATGT-----------------------------------------------ATAGAATCCAAATC------AA----------------------------AATC------------AAAACCAGA------------TCCA---AGAG----CCGCAATCTTATCAAACAAA
droVir3 scaffold_13049:11985241-11985655 + dvi_19607 TCATATATGAGGCG---------------------CC------------------------------------CGCAAGTGAATTCAAAACTGAAGTAAGTGTGCATGTGCTCAATATATAAA-----AA-CGA-----------TC---------------TTA------T--TATGACT----------------------------------------------------------------------------------------GCAATTG---------------------------------------------GTATCTATCTATCCTCCCACCTACATATCACATATA-----TTTGACTTTATCGAACTGTTA-ATCTATTC------------TATACAAATCTATA-----C-------TATA--------CTAT---TT---CTTCGACT-TGTTACGTTCTTGACATGATTTATATAT--------T------------T------ATTT-----------ATA-TTTATAATAAACAAAT--------CTTGTGAAT-T-TCTTCTCTCATTGAT----TTCGACGTCGTTCG-----------------------TTTCGCTTTGCT-----CATCACACA---C-ATG-GGTTCT-CA------------------------------------------------TGCAA--CAACATATA----CTAT-------------ATACACATACACAC--ATATC----------------------------GTATA-------------------------------------------------------------------TCATCAATCGTACCAC----------CA--------CAGAACCACT-TCAAG------------ACAGAG---------CCCCAGTCATATCAGACCAA
droMoj3 scaffold_6680:8835597-8836081 - TCGTCTACGAGGCG---------------------CC------------------------------------GGCCAGTGAATTCAAAACTGAAGTAAGTGTGCATGTGCTCAATATATAAA-----CAC-GA-----------------------------TA------C----TGCATTATCCATC-----CGA-TA-------------------TTGTACTTATCAT---------------------------GACTCTGACTGCAACTCT--AT--------------------CGATCTATCTATCTATCGACCTATCTATCTATCCTCCC-------------ATATA-----TATAACTTTATCGAACTGTCA-ATCTATGCAATTCAATTCTTTACTATATACTATA-----A--------------------T-----ATTT-CTTCGACT-TGTTACGTTCTTGACATGATTTATATATATATACATT------------T------ATT-------------TA-TTTATAATAAACAAAT--------CTTGTGAAT--CTCTTCTCTCATTGAA----TTCGACGTTGTTCG-----------------------TTTCGCTTTGCT-----CATTACACT---C-ATGTGGTTCT-CA------------------------------------------------TGCAA--CGACATA--------------T--ATACAC--------ACA--TATAT---AAAT--------------ATATACATATGTATT---------------TGA-A-------------------TTGAATC------GCAACC------AA-----C----------------------AACCAGAACC------AGAGCCACT------------TCAACAAAGAG----CCCCAATCATATCAGACCAA
droGri2 scaffold_15110:11425032-11425458 + TTGTCTATGAGACGC---C---GG------------C------------------------------------AGCTAGTGAATTCAAAACTGAAGTAAGTTTGCATGTGCTCAATTTTTAAAAATACAAACGA----------------------------TTA---------TCTGCCATATCCACC-----TGA-TA-------------------TTGTATTTATCTTA-------------------------------TGACTGCAACTCT--CC--------------------TAC----------------CC--------------------TATTTATC---------------TACTTTATCGAACTGTCAAATCTATTC-----------------TATTCTATA-----C-------TATACTA----TAA--ATTATTT-ATTCGACT-TGTTACGTTCTTGACATGATTTA------------------------------------T-----------ACA-TATATAATAAATAAAT--------CTTGTGAAT-T-TCTTCTCTCATTGAT----TTCGACGTTGTTCG-----------------------TTTCGCTTTGCT-----CATTACATACGAC-ATG-GGTTCT-CA------------------------------------------------TGCA-AACAACATA----------------AATATAC--------ACA--TATAT-----AT--------------ATATACA------TATA------------------------------------------------TCCGAATCTGAATCGTATCATCAATC-----------------------------------------GT--------------ACCGACAACACAGCCCCAGTCTTATCAGACTAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTGTCTATGAGACGGGTCCTGTGG---------CCCC------------------------------------GGCCAGCGAATTCAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CACCGA----------------------------CTA------C--TATGCATTATCCTCC----ACGA-TCACCTA-----------------------------------------------------------------CAACTCT--TT--------------------CAA--------------------------------------------TC------------------------------------------------------TACTCCGATCTATT-----C-------TA---------TCTTT---CT---TTTCGACTCTGTTAAC-----------------------------TTA----CTTTACT------ATCG-----------ATC-AATATAATAAACCAAA-C-----TTTTGTGAAT-TTTCTCCTCTCAT-GAT----GTCAACGTCGTTCGT-TCTTTC-------------G-TTTCGCTTTGCT-----CATTCCAC--------G-GGTTAT-CA--A---------------------------------------------CA------------------CTCC---ATCCTGAAAC---------------------AAAA-------------------------------------AACACATTGAAA-------------------CCGATTCAGGTGCAGAATC----------------------------------------------------AAGGTCAGA------------ACAGCGAAAAC----CAACAGTCGTACCAGAACAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAATC----------------------------------------------------AAGGTCAGA------------AC.................................1911.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAC----CAACAGTCGTACCAGAAC..2211.00100100000000000000
droSec2
TTGTCTATGAGACGGGTCCTGTGGCCC------CTGT------------------------------------GGCCAGCGAATTCAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CACCGA----------------------------CTA------C--TATGCATTATCCTCC----ACGA-TCACCTA-----------------------------------------------------------------CAACTCT--TT--------------------CAA--------------------------------------------TC------------------------------------------------------TACTCCGATCTATT-----C-------TA---------TCTTT---CT---TTTCAACTCTGTTAAC-----------------------------TTA----CTTTACT------ATCA-----------ATC-AATATAATAAACCAAA-C-----TTTTGTGAAT-TTTCTCCTCTCAT-GAT----GTCAACGTCGTTCGT-TCTTTC-------------G-TTTCGCTTTGCT-----CATTCCAC--------G-GGTTAT-CA--A---------------------------------------------CA------------------CTCC---ATCCTGAAAC---------------------AAAA-------------------------------------AACACATAGAAA-------------------CCGATTCAGGTGCAGAATC----------------------------------------------------AAAGTCAGA------------ACAGCGAAAAC----CAACAGTCTTACCAGAACAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC----------------------------------------------------AAAGTCAGA------------ACAGCGAAAAC----....................2311.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA------------ACAGCGAAAAC----CAACA...............1811.0010010
dm3
TTGTCTATGAGACGGGTCCTGTGG---------CTCC------------------------------------GGCCAGCGAATTCAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CACCGA----------------------------CTA------C--TATGCATTATCCTCC----ACGA-TCACCTA-----------------------------------------------------------------CAACTCT--TT--------------------CAA--------------------------------------------TC------------------------------------------------------TACTCCGATCTATT-----T---T-TCTA---------TCTTT---CT---TTTCGACTCTGTTAAC-----------------------------TTACTTACTTTACT------ATCG-----------ATC-AATATAATAAACCAAA-C-----TTTTGTGAAT-TTTCTCCTCTCAT-GAT----GTCAACGTCGTTCGT-TCTTTC-------------G-TTTCGCTTTGCT-----CATTCCAC--------G-GGTTAT-CA--A---------------------------------------------CA------------------CTCC---ATCCTGAAAC---------------------AAAA--------------AA------------AAAACAAAAAACACATTGAAACC------AA---------CCGATTCAGGTGCAGAAAC----------------------------------------------------AAATTCAGA------------ATAGCGAAAAC----CAACAGTCGTACCAGAATAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA------------ATAGCGAAAAC----CAACAGTCGT..........2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-C-----TTTTGTGAAT-TTTCTCCTCTC............................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GTCCTGTGG---------CTCC------------------------------------GGCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CGGGTCCTGTGG---------CTCC------------------------------------GGCCAGCGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAT-TTTCTCCTCTCAT-GA.......................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CGGGTCCTGTGG---------CTCC------------------------------------GGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------ATAGCGAAAAC----CAACAGTCGTACC.......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAC-----------------------------TTACTTACTTTACT------C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CAGCGAATTCAAAACCGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAC----------------------------------------------------AAATTCAGA------------ATAGCGAAA..........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GACGGGTCCTGTGG---------CTCC------------------------------------GGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA------------ATAGCGAAAAC----CAACAGTCGTACC.......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAC----------------------------------------------------AAATTCAGA------------ATAGC..............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------ATAGCGAAAAC----CAACAGT.............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA--------------AA------------AAAACAAAAAACACA........................................................................................................................................................2050.2010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAA--------------AA------------AAAACAAAAAACACA........................................................................................................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................GCGAATTCAAAACCGAAGTGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2260.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGAAAC---------------------AAAA--------------AA------------AAAAA..................................................................................................................................................................2060.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAA--------------AA------------AAAACAAAAAACA..........................................................................................................................................................19200.1020000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAA--------------AA------------AAAACAAAAAACAC.........................................................................................................................................................20100.1010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAC---------------------AAAA--------------AA------------AAAACAAAA..............................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTGTCTATGAGGCGGGTCCTGTGG---------CTCC------------------------------------GGCCAGCGAATTCAAAACTGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CAACGA----------------------------CTA------C--TATGCATTATCCTCC----ACGA-TCACCTA-----------------------------------------------------------------CAACTCT--TT--------------------CAA--------------------------------------------TC------------------------------------------------------TACTCCGATCTATT-----C-------TA---------TCTTT---CT---TTTCGACTCTGTTAAC-----------------------------TTA----CTTTACT------ATCG-----------ATC-AATATAATAAACCAAA-C-----TTTTGTGAAT-TTTCTCCTCTCAT-GAT----GTCAACGTCGTTCGT-TCTGTC-------------G-TTTCGCTTTGCT-----CATTCCAC--------G-GGTTTG-CA--A---------------------------------------------CA------------------CTCC---ATCATGATAC---------------------AAAA-------------------------------------AATACATTGAAA-------------------CCGATTCAGGTGCAGAATC----------------------------------------------------AAAATCAGA------------ACAGCGAAAAC----CAACAGTCCTACCAGAACAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC----------------------------------------------------AAAATCAGA------------ACAGCGAAAAC----C...................2411.0010100000
...............GTCCTGTGG---------CTCC------------------------------------GGCCAGCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000
...............................................................................................GTAAGTGTGCATGTGCTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC----------------------------------------------------AAAATCAGA------------ACAGCGAAAAC----....................2311.0010000010
droYak3
TTGTCTATGAGACGGGTCCTGTGG---------CTCC------------------------------------GGCCAGCGAATTCAAAACTGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CACCGA----------------------------CTA------C--TATGCATTATCCTCC----ACGA-TCACCTA-----------------------------------------------------------------CAACTCT--TT--------------------CAA--------------------------------------------TC------------------------------------------------------TACTCCGATCTATT-----C-------TA---------TCTTT---CT---TTTCGACTCTGTTAAC-----------------------------TTA----CTTTACT------ATCG-----------ATC-TATATAATAAACCAAA-C-----TTTTGTGAAT-TTTCTCCTCTCAT-GAT----GTCAACGTCGTTCGT-TCTTTC-------------G-TTCCGCTTTGCT-----CATTCCAC--------G-GGTTTG-CA--A---------------------------------------------CA------------------CTCC---ATCATGACAC---------------------AAAA--------------AT----------------------AAACATTGAAA-------------------CCGATTCAGGTGCCGAAAC----------------------------------------------------AAAGTCAGA------------ACAGCGATAAC----CAACAGTCGTACCAAAGCAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAC----CAACAGTCGTACCAAAGC..2311.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC----------------------------------------------------AAAGTCAGA------------ACAGCGATA..........................2011.00100000010000
droEug1
TTGTCTATGAGACGGGTCCCGTGG---------CTCC------------------------------------GTCCAGCGAATTCAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CACCGA----------------------------CTA------C--TATGCATTATCCTCC----ACGA-CCACCTT-----------------------------------------------------------------CAACTCT--TT--------------------CAA--------------------------------------------TC------------------------------------------------------TTCTCCGATCTATT-----C-------TA---------TCT--CTTCT---TTTCGACTCTGTTAAC-----------------------------TTA----CTTTAAT------ATCG-----------ATC-AATATAATAAACCAAA-C-----TTTTGTGAAT-TTTCTCCTCTCAT-GAT----GCCAACGTCGTTCGT-TCTTTC-------------G-TTTCGCTTTGCT-----CATTCCAC--------G-GGTTCT-CC--A---------------------------------------------CA------------------CTCC---ATCATCTCAC---------------------AAAA--------------A------------------------TACACTGAAA-------------------CAGATTCAGGTGCAGAATC----------------------------------------------------AGATTCAGATTCCGAATCAAAACAGCGAAAAC----CAACAGTCGTACCAGAACAGSizeHit CountTotal NormTotal
No Reads
droBia1
TTGTCTATGAGACGGGCCCCGTGGCAGCTGTGGCCCC------------------------------------ATCCAGCGATTTCAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CACCGA----------------------------CTA------C--TATGCATTATCCTCC----ACGACTCACCTT---------------------------------------------------------------TACAACTCT--TT--------------------CAA--------------------------------------------TC------------------------------------------------------TACTCCGATCTATT-----C-------TA---------TCT--CTTCTT--TTTCGACTCTGTTAAC-----------------------------TTA--TAATTTAAT------ATCG-----------ATC-AATATAATAAACCAAA-C-----TTTTGTGAAT-TTTCTCCTCTCAT-GAT----ATCAACGTCGTTCGT-TCTTTC-------------G-TTTCGCTTTGCT-----CATTCCAC--------G-GGTTTG-CC--A---------------------------------------------CACC-A------CCTA----CTCC---ATCATCACAC---------------------AAAA--------------A------------------------TACACTGAAA-------------------ACGATTTAGAACCCGAATC----------------------------------------------------ATACTCAGA------------ACGGCGAAAAC----CAACAGTCGTACCAGAGCAGSizeHit CountTotal NormTotal
No Reads
droTak1
TTGTCTATGAGACGGGTCCTTTGG---------CCCC------------------------------------GGCCAGCGATTTCAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CACCGA----------------------------CTA------C--TATGCATTATCCTCC----ACGATTCACCT---------------------------------------------------------------------------------------------------A--------------------------------------------TC------------------------------------------------------TACTCCGATCTATT-----C---TATCTA---------TCT--CTTCTTT-TTTCGACTCTGTTAAC-----------------------------TTATATACTTTAAT------GCCG-----------ATC-AATATAATAAACCAAA-C-----TTTTGTGAAT-TTTCTCCTCTCAT-GAT----GTCAACGTCGTTCGT-TCTTTC-------------G-TTTTGCTTTGCT-----CATTCCAC--------G-GGTTTA-CC--A---------------------------------------------CAC--A-CTACCTACTGCTACTCC---ATCATCATAC---------------------AAAA--------------ATACA-------CTGAA-----------ACTGAAA-------------------CTGAAGCAGGTTCAGAATC----------------------------------------------------AAAATCAGA------------ACAGCGA----------ACAGTCGTACCAGACTAGSizeHit CountTotal NormTotal
No Reads
droEle1
TTGTCTATGAAACTGGTCCAGCTGTGG------CTCC------------------------------------GTCCAGCGATTTCAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CACCGA----------------------------CTA------C--TATGCATTATCCTCC----ACGA-TCACCTA--------------------------------------------------------------CTACAACTCT--TT--------------------CAA--------------------------------------------TC------------------------------------------------------TACTCCGATCTATT-----C-------TA---------TCT--CTTCTTTTTTTCGACTCTGTTAAC-----------------------------TTA----CTTTTAA------ATTG-----------ATC-AATATAATAAACCAAA-C-----TTTTGTGAAT-TTTCTCCTCTCAT-GAT----ATCAACGTCGTTCGT-TCTTTC-------------G-TTTCGCTTTGCT-----CATTCCAC--------G-GGTTTG-CC--A---------------------------------------------CA------------------CTCCTTCATCATCACAC---------------------ACAA-CAAAAACAAAAAAAC----------------------ACACAACGAAA-------------------CCA--------GCAGAATCAGAATG----------------------------------------------GAAACCAA---------------AACGGAACC----CAACAGTCGTTCCAGAGCAGSizeHit CountTotal NormTotal
No Reads
droRho1
TCGTGTATGAGACGGGTCCAGTGG---------CTCC------------------------------------GTCCAGCGAATTCAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CACCGA----------------------------CTA------C--TATGCATTATCCTCC----ACGA-TCACCTA-----------------------------------------------------------------CAACTCT--TT--------------------CAA--------------------------------------------TC------------------------------------------------------TACTCCGATCTATT-----C-------TA---------TCT--CTTCTT--TTTCGACTCTGTTAAC-----------------------------TTA----CTATAAT------ATCG-----------ATC-AATATAATAAACCAAA-C-----TTTTGTGAAT-TTTCTCCTCTCAT-GAT----GTCAACGTCGTTCGT-TCTTTC-------------G-TTTCGCTTTGCT-----CATTCCAC--------G-GGTTTA-CC--A---------------------------------------------CA------------------CTCC---ATCATCACAC---------------------AAAA--------------AA----------------------ACACAATGA-A-------------------CCGATTCAGGTGCCGAATC----------------------------------------------------AGAATGGGA------------ACAGTGGAACC----CAACAGTCGTTCCAGAGCAGSizeHit CountTotal NormTotal
No Reads
droFic1
TCGTGTATGAGACCGGGCCAGTGG---------CGCC------------------------------------AGCCAGCGAATTCAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----TACCGA----------------------------CTA------C--TATGCATTATCCTCC----ACGA-TCACCTG-----------------------------------------------------------------AAACTCT--TT--------------------CAA--------------------------------------------TT------------------------------------------------------TACTCCGATCTACT-----C-------TA---------TCT--CTTCT---TTTCGACTCTGTTAAC-----------------------------TTA----CTTTAAT------ATCG-----------ATC-AATATAATAAACCAAA-C-----TTTTGTGAAT-TTTCTCCTCTCAT-GAT----GTCAACGTCGTTCGT-TCTTTC-------------G-TTTCGCTTTGCT-----CATTCCAT--------G-GGTTTT-CCGAA---------------------------------------------CA------------------CTTC---ATCATCACAC---------------------AAAAACAAAAACAAACAAAC--------------------AAACAAACTGAAA-------------------CCGATTCAGGTGCAGAATC----------------------------------------------------AAAACCAGA------------ACAGCGAAACT----CAACAGTCGTACCAGAGCAGSizeHit CountTotal NormTotal
No Reads
droKik1
TTGTCTATGAGACGGGTCCCGTCCAGA------TACC------------------------------------TTCTAGCGATTTCAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CACCTA----------------------------CTACGACTTCTATATGCATTATCCTCC----TCGA-TCACCT-------------------------------------------------------------------------------------------------CAA--------------------------------------------TC------------------------------------------------------TACTCCGAACTATTCTGTTCTAT--TTTA--C------TCT--CTTC-----TTTGACTCTGTTAAC-----------------------------TTA----CTTTTAA------TTCG-----------ATC-AATATAATAAACCAAATC-----TTTTGTGAAT-TCTCTCCTCTCAT-GAT----GTCAACGTCGTTCGT-TCTTTC-------------G-TTTCGCTTTGCT-----CATTCCAC------ATG-GGTTTT-CC--A---------------------------------------------CACC-A-CCA------------CC---ACCACCACAC-------CATC----C-----AAAA--------------AC----------------------ATACACTGAAACCAAAATCGAAACTGTAAACAGATTCAGACTCCGACTC----------------------------------------------------AGACTCAG---------------AGCGAGCCA----CAGCCGTCGTTCGAAAACAGSizeHit CountTotal NormTotal
No Reads
droAna3
TAGTTTATGAGACAAAGCCGGCAG------------C------------------------------------AGCCAGCGAATTCAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CACCGG----------------------------TT-------C--TATAAACTGTTCTCCAACCACGA-TCACCTT-----------------------------------------------------------------CAAATCT--TT--------------------C----------------------------------------------TA------------------------------------------------------TACTCTGTTCTATA-----C-------T-----------CTTTCT--T---TTTCGACTCTGTTACT-----------------------------TTT--TAATTT--T------ATCG-----------ATATTGTATAATAAACCAAAAC-----TCTTGTGAAC-TCTCTCCTCTCAT-GAT----GTCAACGTCGTTCGT-TCTTTC-------------G-TTTTGCTTTGCTCCGCTCACTCCAAAAA-CAA-T-GGTTCCTCC-AA---------------------------------------------AA--------CTCA--------------AAACCACAC-------TACACCA--AACTC----------------------------GCATAAA-----------------ACC------AAAC-------ACGATACAGGCCCAGAATC----------------------------------------------------AAGCCCAGA------------CACCCGA----------TCAATCCTACCAGAGCAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........GACAAAGCCGGCAG------------C------------------------------------AGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002011000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCCAGA------------CACCCGA----------TC................1811.001010000
..........GACAAAGCCGGCAG------------C------------------------------------AGCCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------------------------------------------------AAGCCCAGA------------CACCCGA----------TCAATC............2311.001010000
droBip1
TAGTTTATGAAACAAAGCCGGCAG------------C------------------------------------AGCCAGCGATTTCAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CACCGA----------------------------GTT------C--TATAAACTATTCTCCAACCAAGA-TCACCTT-----------------------------------------------------------------CAAATCT--TT--------------------CT----------------------------------------------A------------------------------------------------------TACTCTGTTCTATA-----C--------------------TTT---CT---TTTCGACTCTGTTACT-----------------------------TTT--TAA-TTCTT------ATCG-----------ATATTGTATAATAAACCAAAAC-----TTTTGTGAAC-TCTCTCCTCTCAT-GAT----GTCAACGTCGTTCGT-TCTTTC-------------G-TTTTGCTTTGCTCCGCTCACTCCAAAAC-CAA-T-GGTTCTTCC--A---------------------------------------------A--AA--AAACTTA-------------AAAACCACAC-------TACACCAA-AACTC----------------------------GCCTAAT-----------------ACC------AAAC-------ACGATACAGGCCCAGATCC----------------------------------------------------AAGCACAGA------------CTCCCGA----------TCAGTCGTACCAGAGTAGSizeHit CountTotal NormTotal
No Reads
dp5
TTGTGTATGAGACCACGCCCACAC---------CCAC------GCCCA------------CGACAG------CCTTGAGCGATTTTAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CAAGAACCAACCACCGATCCA-----------A-CGA-----TC--AATGCATTATCCTTCAAA-AAGA-TCACCTATAAACACATAAAGATTTCATCTTTGATTC--------------------GATTGG------------ACTCTGATT--------------------CGA--------------------------------------------TC-------TATACT--TCGAT--------TCT-AAAACTATTCTA----------AACT-----CTATT-----C-------TA--ATCTAAATCT--ATTCTTC-TTTCGACGCTGTTAAG-----------------------------TTT--ACA-TACGAAAAAAAAAAGAAAAAACCAAAAAA-AAATTAATAAACAAAAACCTTTTCTTTGTGAATCTTTCTTCTCTCAA-TCTCTCAATCAACGTCGCTCGTGTCCTTCCTCCGCTCGATTGGTTTTCGCTTTGAT-----CATTCCAC--------A-CGCCCA-CA--A----------------------------------------------ACGC--CC------------------AC--------AAACGCCCACACAT--ACAAC----------------------------CACAA-------------------------------------------------------------------CCACTCATCGTGCCACACATTCTCATGG--------CAGAAGCAGCCAC-----------------AGCAGG-AG----GCACAGTCGTATCAGAGCACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAAAACCTTTTCTTTGTGAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
...................................................................................................................................................................................................................................TTGATTC--------------------GATTGG------------ACTCTGATT--------------------C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
droPer2
TTGTGTATGAGACCACGCCCACGG---------CCGCGCCCACGCCCATCGCCACGGCCGCGACAGCATCGGCCTTGAGCGATTTTAAAACCGAAGTAAGTGTGCATGTGCTCAATATCTAAC-----CAACAACCAACCACCGATCCA-----------A-CGA-----TC--AATGCATTATCCTTCAAA-AAGA-TCACCTATAAACACATAAAGATTTCATCTTTGATTCGATTCGATTCGATTCGATTCGATTGG------------ACTCTGATT--------------------CGA--------------------------------------------TC-------TATACT--TCGAT--------TCT-AAAACTATTCTA----------AACT-----CTATT-----C-------TA--ATCTAAATCT--ATTCTTT-TTTCGACGCTGTTAAG-----------------------------TTT--A-CAA-------AAAAAAGAAAAAAC---AAAA-AAATTAATAAACAAAAACCTTTTCTTTGTGAATCTTTCTTCTCTCAA-TCTCTCAATCAACGTCGCTCGTGTCCTTCCTCCGCTCGATTGGTTTTCGCTTTGAT-----CATTCCAC--------A-CGCCCA-CA--A----------------------------------------------ACGC--CC------------------AC--------AAACGCCCACACAT--ACAAC----------------------------CACAA-------------------------------------------------------------------CCACTCATCGTGCCACACATTCTCATGG--------CAGAAGCAGCCAC-----------------AGCAGG-AG----CCACAGTCGTATCAGAGCACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................ATTCGATTCGATTCGATTCGATTGG------------ACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAC-----------------AGCAGG-AG----CCACA...............1920.501000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCCAC-----------------AGCAGG-AG----CC..................1930.331001000
droWil2
TTGTGTATGAGACGACGCCGGTGGCGG------TTGC------------------------------------AGCAAGTGAATTCAAAACTGAAGTAAGTGTGCATGTGCTCAATATCTAAA-----AGAAAAGAAAAAAAACATATATCTCTCCTCACATAGC------C--TATGTTTTATCTTTA----AAAA--AATCTA----------AAATT------------------------------------------------TTCAACACT--ATCTCTATTTCTAAATCTATATCTAAATA-------------------------------------------------------------------------------------------------------------T-----C-------TA---------T-------C----TATTGACTATGTTACA-----AAAA--------------------TTA----TTTG-------------------------CA-AATTTAATAAACCAAA-A-----TTTTGTGAAT-TCTCTTCTCTCAT-GAT----TTCAACGTCGTTCG-----------------------TTTCGCTTTGCT-----CATTACAC------ATG-GGTTTC-CCTACCATTCAACTCATCACCTCAACTCAACTCAACTCAAATCAACTCAACTCAA--CTACATA--------------T--ATAT--A--TTCACACACAT--ACTAC--AT--------------ATAT----ATGT-----------------------------------------------ATAGAATCCAAATC------AA----------------------------AATC------------AAAACCAGA------------TCCA---AGAG----CCGCAATCTTATCAAACAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCAGA------------TCCA---AGAG----CCGCA...............2111.00100001
........GAGACGACGCCGGTGGCGG------TTGC------------------------------------AGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
droVir3
TCATATATGAGGCG---------------------CC------------------------------------CGCAAGTGAATTCAAAACTGAAGTAAGTGTGCATGTGCTCAATATATAAA-----AA-CGA-----------TC---------------TTA------T--TATGACT----------------------------------------------------------------------------------------GCAATTG---------------------------------------------GTATCTATCTATCCTCCCACCTACATATCACATATA-----TTTGACTTTATCGAACTGTTA-ATCTATTC------------TATACAAATCTATA-----C-------TATA--------CTAT---TT---CTTCGACT-TGTTACGTTCTTGACATGATTTATATAT--------T------------T------ATTT-----------ATA-TTTATAATAAACAAAT--------CTTGTGAAT-T-TCTTCTCTCATTGAT----TTCGACGTCGTTCG-----------------------TTTCGCTTTGCT-----CATCACACA---C-ATG-GGTTCT-CA------------------------------------------------TGCAA--CAACATATA----CTAT-------------ATACACATACACAC--ATATC----------------------------GTATA-------------------------------------------------------------------TCATCAATCGTACCAC----------CA--------CAGAACCACT-TCAAG------------ACAGAG---------CCCCAGTCATATCAGACCAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACT-TCAAG------------ACAGAG---------CCCCA...............1911.001000000000000000000010000000000000000000000000000000000000000000
.....TATGAGGCG---------------------CC------------------------------------CGCAAGTGAATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000001000000000000000000000000000000000000000000000000
.......TGAGGCG---------------------CC------------------------------------CGCAAGTGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-------------ATACACATACACAC--ATATC----------------------------GTAT.......................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
TCGTCTACGAGGCG---------------------CC------------------------------------GGCCAGTGAATTCAAAACTGAAGTAAGTGTGCATGTGCTCAATATATAAA-----CAC-GA-----------------------------TA------C----TGCATTATCCATC-----CGA-TA-------------------TTGTACTTATCAT---------------------------GACTCTGACTGCAACTCT--AT--------------------CGATCTATCTATCTATCGACCTATCTATCTATCCTCCC-------------ATATA-----TATAACTTTATCGAACTGTCA-ATCTATGCAATTCAATTCTTTACTATATACTATA-----A--------------------T-----ATTT-CTTCGACT-TGTTACGTTCTTGACATGATTTATATATATATACATT------------T------ATT-------------TA-TTTATAATAAACAAAT--------CTTGTGAAT--CTCTTCTCTCATTGAA----TTCGACGTTGTTCG-----------------------TTTCGCTTTGCT-----CATTACACT---C-ATGTGGTTCT-CA------------------------------------------------TGCAA--CGACATA--------------T--ATACAC--------ACA--TATAT---AAAT--------------ATATACATATGTATT---------------TGA-A-------------------TTGAATC------GCAACC------AA-----C----------------------AACCAGAACC------AGAGCCACT------------TCAACAAAGAG----CCCCAATCATATCAGACCAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....CTACGAGGCG---------------------CC------------------------------------GGCCAGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.CGTCTACGAGGCG---------------------CC------------------------------------GGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
droGri2
TTGTCTATGAGACGC---C---GG------------C------------------------------------AGCTAGTGAATTCAAAACTGAAGTAAGTTTGCATGTGCTCAATTTTTAAAAATACAAACGA----------------------------TTA---------TCTGCCATATCCACC-----TGA-TA-------------------TTGTATTTATCTTA-------------------------------TGACTGCAACTCT--CC--------------------TAC----------------CC--------------------TATTTATC---------------TACTTTATCGAACTGTCAAATCTATTC-----------------TATTCTATA-----C-------TATACTA----TAA--ATTATTT-ATTCGACT-TGTTACGTTCTTGACATGATTTA------------------------------------T-----------ACA-TATATAATAAATAAAT--------CTTGTGAAT-T-TCTTCTCTCATTGAT----TTCGACGTTGTTCG-----------------------TTTCGCTTTGCT-----CATTACATACGAC-ATG-GGTTCT-CA------------------------------------------------TGCA-AACAACATA----------------AATATAC--------ACA--TATAT-----AT--------------ATATACA------TATA------------------------------------------------TCCGAATCTGAATCGTATCATCAATC-----------------------------------------GT--------------ACCGACAACACAGCCCCAGTCTTATCAGACTAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACT-TGTTACGTTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110

Generated: 05/19/2015 at 05:36 AM