ID:

dsi_20594

 Coordinate:

x:4951325-4951599 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. 3r:11916236-11916250 +
  2. dsi_20594  x:4951439-4951453 -
star

Sense Strand Reads

CGTCGTACAGTGGATCCCGCCTACGTTGGATTTGGGTTGATAAGATCCAGGTATCCCCCATCGCCGTATCTGCTCTCAATCCCATCACCGATCTTCGTGAGTTAATCAGCAAAAAGCTCACGTTCGGGGTTTCCTTACCCACCTACACCCAGAGAAAAGATCACTTCATAAATTTATCAGCGGCAGCTCTTCAAGTAACTTGGAATTCCCAGCTTATCTCATTGGGTAATTTGAATGGAACGTTGGGAGATAATTCACAAATGGAAAACATTTACCCAATGACTTATTTACTCGTTTTATGACAACACTTTGTACCATCTTGCAGCTTTTTTTCTTCGAGTGTAGACCACATTTTCGGGCACATTCGGTGCGGAT
****************************************************************************************************************************************************************************************************...........((((((...((.((((.((....)).))))))..))))))******************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR618934
dsim w501 ovaries
 M023
head
 M025
embryo
 O002
Head
 M024
male body		 M053
female body
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
.................................................................................................................................................................................................ATGAACTTGGAATTCCCAG................................................................................................................................................................... 19 2 1 420.00 420 364 24 10 13 0 3 5 1 0 0 0 0 0
..................................................................................................................................................................................................TGAACTTGGAATTCCCAG................................................................................................................................................................... 18 2 3 164.33 493 156 37 149 81 52 14 1 0 0 2 0 1 0
....................................................................................................................................................................................................AACTTGGAATTCCCA.................................................................................................................................................................... 15 0 2 139.50 279 0 265 0 0 0 0 0 0 8 6 0 0 0
.................................................................................................................................................................................................ATGAACTTGGAATTCCCA.................................................................................................................................................................... 18 2 5 95.00 475 104 149 26 60 52 35 34 10 3 0 0 2 0
................................................................................................................................................................................................CATGAACTTGGAATTCCCAG................................................................................................................................................................... 20 3 5 94.20 471 364 9 11 21 52 9 4 0 0 1 0 0 0
....................................................................................................................................................................................................AACTTGGAATTCCCAGT.................................................................................................................................................................. 17 1 2 49.50 99 0 99 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AACTTGGAATTCCCAG................................................................................................................................................................... 16 0 2 28.50 57 0 57 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GAACTTGGAATTCCCA.................................................................................................................................................................... 16 1 2 23.00 46 0 46 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................ATGAACTTGGAATTCCCAGT.................................................................................................................................................................. 20 3 12 17.83 214 51 37 11 30 0 32 17 34 0 0 0 1 1
....................................................................................................................................................................................................AACTTGGAATTCCCAGTA................................................................................................................................................................. 18 2 11 15.09 166 153 11 0 0 0 0 0 0 1 1 0 0 0
...................................................................................................................................................................................................GAACTTGGAATTCCCAGT.................................................................................................................................................................. 18 2 6 11.83 71 51 15 0 1 0 0 1 3 0 0 0 0 0
..................................................................................................................................................................................................TGAACTTGGAATTCCCA.................................................................................................................................................................... 17 2 20 10.40 208 0 207 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................ACTTGGAATTCCCAG................................................................................................................................................................... 15 0 2 10.00 20 0 20 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................ATGAACTTGGAATTCCCAGC.................................................................................................................................................................. 20 2 1 10.00 10 0 0 4 3 0 3 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ACTTGGAATTCCCAGT.................................................................................................................................................................. 16 1 5 7.00 35 0 35 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TGAACTTGGAATTCCCAGC.................................................................................................................................................................. 19 2 2 6.50 13 0 0 8 3 0 2 0 0 0 0 0 0 0
...................................................................................................................................................................................................GAACTTGGAATTCCCAGTA................................................................................................................................................................. 19 3 20 5.30 106 51 3 0 0 51 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................ATGAACTTGGAATTCCCAGGT................................................................................................................................................................. 21 3 2 4.50 9 0 9 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TGAACTTGGAATTCCCAGGT................................................................................................................................................................. 20 3 5 3.20 16 0 16 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AACTTGGAATTCCCAGGT................................................................................................................................................................. 18 1 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TGAACTTGGAATTCCCAGCT................................................................................................................................................................. 20 2 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TAATTTGAATGGAACGTTGGG................................................................................................................................ 21 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 3 0 0
....................................................................................................................................................................................................AACTTGGAATTCCCAGG.................................................................................................................................................................. 17 1 3 2.33 7 0 7 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................AATCAGCAAAAAGCTCACG............................................................................................................................................................................................................................................................. 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................ATGAACTTGGAATTCCCAGG.................................................................................................................................................................. 20 3 7 1.86 13 0 3 1 5 0 3 1 0 0 0 0 0 0
...................................................................................................................................................................................................GAACTTGGAATTCCC..................................................................................................................................................................... 15 1 17 1.71 29 0 28 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................GAACTTGGAATTCCCAG................................................................................................................................................................... 17 1 2 1.50 3 0 3 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ACTTGGAATTCCCAGGT................................................................................................................................................................. 17 1 2 1.50 3 0 3 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CATGAACTTGGAATTCCCAGC.................................................................................................................................................................. 21 3 3 1.33 4 0 0 0 2 0 2 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................AATTTGAATGGAACGTTGGGAA.............................................................................................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................CATGAACTTGGAATTCCCAGCT................................................................................................................................................................. 22 3 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................TGAGTTTATCAGCAAGAAGGTCA............................................................................................................................................................................................................................................................... 23 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................TAACTTGGAATTCCC..................................................................................................................................................................... 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................AGGAACTTGGAATTCCCAGT.................................................................................................................................................................. 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................AGGAACTTGGAATTCCC..................................................................................................................................................................... 17 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................ATTAACTTGGAATTCCCA.................................................................................................................................................................... 18 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................AACTTGGAATTCCCAGCT................................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ACTTGGAATTCCCAGCT................................................................................................................................................................. 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CTTGGAATTCCCAGCT................................................................................................................................................................. 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AACTTGGAATTCCCG.................................................................................................................................................................... 15 1 15 0.80 12 0 12 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AACTTGGAATTCCCAGCA................................................................................................................................................................. 18 1 4 0.75 3 0 3 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................AATGAACTTGGAATTCCCA.................................................................................................................................................................... 19 2 3 0.67 2 0 1 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................ACTTGGAATTCCCAGTA................................................................................................................................................................. 17 2 20 0.60 12 0 9 0 0 0 0 0 0 1 0 0 1 1
..................................................................................................................................................................................................TGAACTTGGAATTCCCAGG.................................................................................................................................................................. 19 3 20 0.60 12 0 1 3 7 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................AACTTGGAATTCCCAGCG................................................................................................................................................................. 18 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TTAACTTGGAATTCCCAGT.................................................................................................................................................................. 19 2 4 0.50 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CTAACTTGGAATTCCCAG................................................................................................................................................................... 18 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AACTTGGAATTCCCAAC.................................................................................................................................................................. 17 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................AAGAACTTGGAATTCCCAG................................................................................................................................................................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ACTTGGAATTCCCAGG.................................................................................................................................................................. 16 1 4 0.50 2 0 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CCATGAACTTGGAATTCCCAG................................................................................................................................................................... 21 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TGGAATTCCCAGCTT................................................................................................................................................................ 15 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AACTTGGAATTCCCAT................................................................................................................................................................... 16 1 7 0.43 3 0 3 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CTTGGAATTCCCAGT.................................................................................................................................................................. 15 1 14 0.43 6 0 6 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................AATGAACTTGGAATTCCC..................................................................................................................................................................... 18 2 10 0.40 4 0 3 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................TGAACTTGGAATTCCCAGA.................................................................................................................................................................. 19 3 20 0.35 7 3 2 0 0 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TGAACTTGGAATTCCCAGCTCA............................................................................................................................................................... 22 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ACTTGGAATTCCCAGCG................................................................................................................................................................. 17 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................AGGAACTTGGAATTCC...................................................................................................................................................................... 16 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.GTGGTACAGTGGAAGCCGCCT................................................................................................................................................................................................................................................................................................................................................................. 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................CTTGGAATTCCCAGC.................................................................................................................................................................. 15 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................ACGAACTTGGAATTCCCA.................................................................................................................................................................... 18 2 9 0.33 3 0 2 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AACTTGGAATTCCCATC.................................................................................................................................................................. 17 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AACTTGGAATTCCCAGCCTC............................................................................................................................................................... 20 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AACTTGGAATTCCCAGA.................................................................................................................................................................. 17 1 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................TATCCGCTCACAATCCCCTC................................................................................................................................................................................................................................................................................................. 20 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ACTTGGAATTCCCATC.................................................................................................................................................................. 16 1 8 0.25 2 0 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GAACTTGGAATTCCCAGG.................................................................................................................................................................. 18 2 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AACTTGGAATTCCCAC................................................................................................................................................................... 16 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................ATGGAACGTTGAAAGGTAATT........................................................................................................................ 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................GGTTGATAAGGGCCAGGT................................................................................................................................................................................................................................................................................................................................... 18 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................ATGAACTTGGAATTCCCAGA.................................................................................................................................................................. 20 3 11 0.18 2 0 1 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................ATGAACTTGGAATTCCCATC.................................................................................................................................................................. 20 3 12 0.17 2 0 0 2 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AACTTGGAATTCCCAGAG................................................................................................................................................................. 18 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ACCTTGGAATTCCCAG................................................................................................................................................................... 16 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TGAACTTGGAATTCCCAGCG................................................................................................................................................................. 20 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GAACTTGGAATTCCCAGA.................................................................................................................................................................. 18 2 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AAATGAACTTGGAATTCCCAG................................................................................................................................................................... 21 3 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................ACTTGGAATTCCCGGTT................................................................................................................................................................. 17 2 14 0.14 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.....................................................TCCGCCATCGCCGTA................................................................................................................................................................................................................................................................................................................... 15 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................ATCCCATGACCGAACTT........................................................................................................................................................................................................................................................................................ 17 2 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CTTGGAATTCCCAGTTTAGT............................................................................................................................................................. 20 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AACTTGGGATTCCCA.................................................................................................................................................................... 15 1 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GACTTGGAATTCCCA.................................................................................................................................................................... 15 1 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................CTTTTTTCCTTCGAGT.................................. 16 1 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................AACTTGGAATTCCCAGTG................................................................................................................................................................. 18 2 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................GTTGATAGGTTCCAGGT................................................................................................................................................................................................................................................................................................................................... 17 2 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................AAGAACTTGGAATTCCCAGT.................................................................................................................................................................. 20 3 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TATGAACTTGGAATTCCCAG................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................ACTTGGAATTCCCAGTTA................................................................................................................................................................ 18 2 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................GCTTTTTGTCTCCGAGGGTA............................... 20 3 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................CATTAACTTGGAATTCCC..................................................................................................................................................................... 18 2 14 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................AGCATATCCCATTGGGT.................................................................................................................................................... 17 2 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AACTTGGAGTTCCCA.................................................................................................................................................................... 15 1 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................ATTTACTCGGTTTGTGA......................................................................... 17 2 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TTGGAATTCCCAGCG................................................................................................................................................................. 15 1 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ACTTGGAATTCCCATGT................................................................................................................................................................. 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GATGAACTTGGAATTCCCA.................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................ATGAGCTTGGAATTCCCAG................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AACTTGGAATTCCCATG.................................................................................................................................................................. 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CTTGGAATTCCCGGTT................................................................................................................................................................. 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TGAACTTGGAATTCCCAAC.................................................................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................GAATGAACTTGGAATTCCC..................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................GTATGATCCAGGTAT................................................................................................................................................................................................................................................................................................................................. 15 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................GTAGCATGGAATTCCCA.................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................GCAAAAGGCTCATGTTC.......................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CTTGGAATTCCCAAC.................................................................................................................................................................. 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................CACGTTCGGGGGTTA.................................................................................................................................................................................................................................................. 15 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................AACTTGGAGTTCCCAGT.................................................................................................................................................................. 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AGAACTTGGAATTCCCA.................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GCAGCATGTCACCTAGGGCGGATGCAACCTAAACCCAACTATTCTAGGTCCATAGGGGGTAGCGGCATAGACGAGAGTTAGGGTAGTGGCTAGAAGCACTCAATTAGTCGTTTTTCGAGTGCAAGCCCCAAAGGAATGGGTGGATGTGGGTCTCTTTTCTAGTGAAGTATTTAAATAGTCGCCGTCGAGAAGTTCATTGAACCTTAAGGGTCGAATAGAGTAACCCATTAAACTTACCTTGCAACCCTCTATTAAGTGTTTACCTTTTGTAAATGGGTTACTGAATAAATGAGCAAAATACTGTTGTGAAACATGGTAGAACGTCGAAAAAAAGAAGCTCACATCTGGTGTAAAAGCCCGTGTAAGCCACGCCTA
********************************************************************************************************************************...........((((((...((.((((.((....)).))))))..))))))**************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
...............................................................................................................................................................................................................................................................GAGTTTACGTTTTGTTAATGGGT................................................................................................. 23 3 1 3.00 3 0 3 0 0 0 0 0 0
..........................ACCTAAACCCAACTATTCTAG........................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0
.......................................................................................................................................ATGGGTGGATGTGGGTCTCTT........................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................GTCGAGGAGTTCATTGCACC............................................................................................................................................................................ 20 2 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................ATGGGTGGATGTGGGTCTCT............................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................GGGTAGTTGCTAGGAGCACT................................................................................................................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................AGCCCCAACGGAATG............................................................................................................................................................................................................................................. 15 1 3 0.33 1 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................AAAAAAAGCAGCTGACATCT............................. 20 2 3 0.33 1 1 0 0 0 0 0 0 0
...........................................................................................................................................CTGGATGTTGGTCTCTTTGCT....................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 1 0 0 0
.............................................................................................................................................................................AATAGTAGGCGTCGAGAAGTA..................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0
.............TACGGCGGGTGCGACCTAAAC..................................................................................................................................................................................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0
........ACGCCTAGGGAGGATGCAA............................................................................................................................................................................................................................................................................................................................................................ 19 3 15 0.20 3 0 0 0 0 0 3 0 0
...................................................................................................................................................................................CGCTGTCAAGAGGTTCATTG................................................................................................................................................................................ 20 3 6 0.17 1 0 0 0 0 0 0 1 0
..................................................................................................................TCGAGTGCAAGCCTCAG.................................................................................................................................................................................................................................................... 17 2 12 0.17 2 0 0 0 2 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................AAAAAAAAGCAGCTGACATCT............................. 21 3 7 0.14 1 1 0 0 0 0 0 0 0
.......................................................................................................................................ATGGGTGGATGTGGGTTCTT............................................................................................................................................................................................................................ 20 3 8 0.13 1 1 0 0 0 0 0 0 0
.......................................................................CCAGAGTAAGGGTAGTGGTT............................................................................................................................................................................................................................................................................................ 20 3 9 0.11 1 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................TCGAACAGAGTAACCGA.................................................................................................................................................... 17 2 16 0.06 1 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................TGAAACAGGGTAGCACG.................................................... 17 2 18 0.06 1 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................TCAAAGACTGTGTAAGCCA...... 19 3 20 0.05 1 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................GACCCTTAAGGTTCGAGTA.............................................................................................................................................................. 19 3 20 0.05 1 0 0 0 1 0 0 0 0
....................................................................................................................................................................AAGAATTTAGATAGTCG.................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 1
...................................................................................................................................................................................................................................................................................................................................TCGTCAAAAAGAAGCTCA.................................. 18 2 20 0.05 1 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:4951275-4951649 - dsi_20594 CGTCGTACAGTGGATCCCGCCTACGTTGG------------ATTT--GGGTTGATAAGATCCAGGTATCCCC---------------------------CA----TCG---CCGTATCTGCTCTCAAT--CCCATCACCGATCTTCGTGAGTTAATCAGCAAAAA---GCTCACGTTCGGGGTTTCCTTACCCACCTACACCCAGAGAAA-------------AGATCACT--T------------------------CAT-AAATTTATCA-GC-GGCAGCTCTTCA-----------AGTAACT-TGGAATTCCCAGCT-TATC--TCATTGGGTAATTTGAATGGAACGTTGGGAGATAATTCACAAATGGAA-AACATTTACCCAATGACTTATTTA------------------------------------------------------------------------------------------------------------------------------CTCGTTTTATGACAACACTTTG----------------------------------------TACCATCTTGCAGCTTTTTTTCTTCGAGTGTAGAC--CACATTTTCGGGCACATTCGGTGCGGAT
droSec2 scaffold_4:1449889-1450268 + CGTCGTACAGTGGATCCCGCCTACGTTGG------------ATTT--GGATTGATAAGATCCAGGTATCCCC---------------------------TA----TCG---CCATATCAGCTCTTTAT--CCCATCAACGATCTTCGTGAGTTAATCAGCAAAAA---GCTCACGTTCGGGGTTTCCTTACCCACCTACACCCAGAGAAA-------------AGATCACT--T-------------------CATACCAT-AAATTTATCA-GC-GGCAGCTCTTCA-----------AGTAACT-TGGAATTCCCAGCT-TATC--TCATTGGGTAATTTGAATGGAACGTTGGGAGATAATTCACAAATGGAA-AACATTTACCCAATGACTTATTTA------------------------------------------------------------------------------------------------------------------------------CTCGTTTTATGACAACACTTTG----------------------------------------TACCATCTTGCAGCTTTTTTTCTTCGAGTGTAGAC--CACATTTTTGGTCACATTCGGTGCGGAT
dm3 chrX:5305228-5305629 - CGTCGTACAGTGGACCCCGCCTATGTTGGCCGCAATGATCGATTT--GGGTTGATAAGATCCTGGCATCCCCATAT-ATAGT-TATATCTATGTTCCCCTA----TCG---CCGTATCTGCTCTCTATGTTCTATCAACGATCTTCGTGAGTTAATCAGCAAAAAAGAGCTCACGTTCGGGATTTCCTTAC----CTACACGCAGAGAAA------------AAGATCACT--T------------------------CAT-AAATTTATCCAGC-GGCAGCTCATCA-----------AGTAACG-TGGAATTCCCAGCT-TATC--GCATTGGGTAATTTGAATGGAGCGCTGGTAGATAATTCACAAATGGAA-AACATTTACCCAATGACTTATTTA------------------------------------------------------------------------------------------------------------------------------CTCGTTTTATAAC-----------------------------------------------------ATCTTGCAGCATTTTCTCTTCGAGTGCAGAC--TATATTTTTGGGTAAACGCCGTGCTGAT
droEre2 scaffold_4690:2659277-2659657 - CGCCGTACAGTGGACCCCACATACGTTGGCCGT--TGGTCTATTTTTGGTTTGATAA-ATGCAGGCATCCCCAAAG-CTG------ATTTATATCTGCCTA----TCT---TGGTATCCGCTGT------CATATCAACGA-----------------GCAAAAA---GCTCGCATTCGGGGTTTCCTTA--------CACCCAGAGAGA-----------AAAGATCACT--T------------------------CAT-AACTTTATCA-CC-AGCAGCTTTTCA-----------AGTAACG-TGGAATTCCCAGCT-TATC--TCAT-AGGTAATTTGAATGGAACGCTGGATGATATTACAGAAATGGAA-AACATTTACCTAATGACTTATTTA------------------------------------------------------------------------------------------------------------------------------CTCGTACTATGACACCACTTTGGGCAACAAACATGGACGCTTTTGCCCCACTTGATGTT-------------------------------------C--CACATTTTCGGGTACACTCGGTGCGGAT
droYak3 X:3164105-3164543 + CGCCGTACAGTGGACCCCACCTACGTTGGCT-------------T--GGGTTGATAA-ATCCAGGTATGCCCACAG-CTAGTATATATCTATATCTACCTA----TCG---GGGTATCTGCTGT------CCTATCAACGATCTTCGTGTGTTAATCAGCAAACA---GCTCGCATTCGGGGTTTCCTTA--------CACGCAGAGAAATGACAAAGAGGAAAGATCACT--T------------------------CAT-AAATTTATCA-CC-AGCGGCTTTTCA-----------AGTAACA-TGGAATTCCCAGCT-TATC--TCAT-AGGTAATTTGAATGGAACGCTAGCAGATAATTCCGCAATGGAA-AACATTTACCTAATGACTTATTTA------------------------------------------------------------------------------------------------------------------------------CTCGCATTATGACACCACTTTGAGCAACAAACATGGACGCTTTTGGCTCATTGGATGTTCGTTACCATCTTGAAGTTAATTTTTTTCGAGTGTGGAC--TAGATTTTTGGGTACACACCGTGCGGAT
droEug1 scf7180000409040:157144-157495 + CGCCGCAGAGTGAGGACTCCCTACGATGTCC--C-CACTTTATTTCA--GGTGATAA-ATTCATGTATCCACTTGGGGT-----TTATCTAGATCTCTCTATATATAGGGATGGTATCTGCTTG------CTTATCAGCAATCTTTCAGAGTTAATCAGAAGAAAA--ACACTGGCTAGGGGTTTCCTTATAATGAAAAAGAAAGAAAAA-------------GGCTTA---------------------ATCTACGGTAA-AATTTTATCA-CCCACTAGCTTGTTAAATTACAAAATGGAAACC-TGGAATTCCCATGT-TATC--TCAC-TGGTAA-------GGTGCACTAAAAGTTAATTAAGAAATGGAA-AACATTTACCTAATGACTT-TTTA------------------------------------------------------------------------------------------------------------------------------CTTCCAGGATGGCAGAACTT-----------------------------------------------------------------------------------------------------------
droBia1 scf7180000301345:186337-186660 + CGAGGGACAGTGGGCCCTGGCTATGCTGGCCGC--CACTCCACTTGGGGGCTGGTAA-ATCCATGTATCCACATGG-CT-----TTATCTAT--------------C------------GCTGT------CTTATCAGCCATCCTCTG--------------------CATCCCATTCGGAATTCCCTTA--------CACCAGGGGAAA------------AATATT---CCTATGATT----TAAGAAACCCACGATTTTGTTTTTATTG-CC-ACCTGGTTTTCTAATTAG-----AGTAACC-TGGAATTCCCAGCT-TATC--TCAC-CGGTAGTATAAATGGGACGCTAAAAGTTAATTAAGAAATGGAA-AACAATTACCTAATGACTTATTTA----CATA----------------------------------------------------------------------------------------------------------------------CTTCTATTGTGACAGCAGTT-----------------------------------------------------------------------------------------------------------
droTak1 scf7180000414745:92655-92975 + ------ACAGTGGGCCCTGGCTACGTTGCCC----CAGTCTATTTGC--CGTGGTGA-ATCTATGTTTCCGCACGG-TT-----TTATCTAC--CTTCGTA----TCG---GGGTATCTTCTGC------CTTATCTTTCATCTTTGGGGGTTACTG-----------------ATTCGGGGTTTCCTTA--------CACCCAGAAAAA------------AGTATTATTCCT--------------ATATATATGATAT-AA-CTTATTA-GT-AGTCGCTTTTCAAGTTGC--------AAAA-TGGAATTCCCAGCTTTATC--TCTG-AGGTAATATGAATGGCACGCTAAAAGTTAATTAAGAAATGTAAAAACTTTTCTTTAATGACTTATTTA------------------------------------------------------------------------------------------------------------------------------CCTGTACTACGGCAGCAGTTT----------------------------------------------------------------------------------------------------------
droEle1 scf7180000491272:119958-120285 + CGCCGTACAGTGGACTCTGGCTATATTGTCGATC-CAGTTTAGCTCC--GGTGGTAA-ATGCATGTATCCACATGG-GT-----TTATCTAA--CTATGTA----GCT---GGGTATCTGCTGT------CTTATCAGCGATCTTCGAGAGTTAATCAACAAAAAA--G-----------------------------CACCCAGAAAA--------------AGCTCATT-------------TAACAAACTCACGATAT-AATTTTATCA-CC-ACCAGCTTTTCAAATTACAAAATAGAAACCAAAAAATTCCTTGGT-TATCGGTTAT-ACGTAATATAACTGACACGTTTTAAGTTAATTAAGAAACGGAA-AACCTTTTCCTT----TTTATTAA------------------------------------------------------------------------------------------------------------------------------CTTGTATTATGGCAGCAGTT-----------------------------------------------------------------------------------------------------------
droRho1 scf7180000779588:352835-353173 - CGCCGGACAGTGGGCTCTGGGTATAATGTCTATC-CAGTCTATCTCC--GGTGATAA-ATCCATGTATCCACATGG-T---------------------TA----TCT---GGGTATCTGCTGT------CTTATCAGCTATCTTCGAGACCTAATCAACATTTG---GCAGCTGTTGGGGTTTTCCTTA--------AACACAGAAAAA-------------AGCTCA----TACCATT----AAACAAACCCACAATAT-AATTTTATCA-CT-ACTAGCTTTTCAAATTACAAAATAGAAACG-TGAAATTACCAGGT-TATC--GCAC-AGGTAATACAAATGGCACGCTAAAAGTTAATTAAGAAATGGAA-AACATTTATCTTATGAATAATTGT------------------------------------------------------------------------------------------------------------------------------CT--ATTTATGCCGGCAGTT-----------------------------------------------------------------------------------------------------------
droFic1 scf7180000454045:419311-419792 - CGCCGGACAGTGAGCCCAGACTATGTTGGCC----CAGTCCATCGCC--GGTGGTAA-ATCCATGTATCCACAAGA-T--------ATC-----TTGTGTA----TCT---CAATATCTGTTGC------CTTATCAGTGA----------------------------------TACGGGGTTTCCTTA--------CACCCTGCATAA------------AATATT---CATACTATT----TGCGAAACTAACGACAT--------------------CACACGA-------ATATAAAAACT-GGAAACGTTCAGGT-TATC--TCAC-AGGTAACACAAGTGGAATGCTTAAAGTCAATTGGGAAAGGGAA-AACATTTGCCTAATGACTTACT-ACTTACTTACTTTCAGAAACTCTCAAACTTAAATAATTTACTTTAACTATAGAGTGAACACAGTAAGTTTGTTTTGTATCATAAAACAAACTGTTTTATTCATTTTGGATTTTGGTATTTTATCAAGCTCGGATTGTGAAA-TAATTTC----------------------------------------TACAATCTTGAAGTGTT--TTTTTTGAGTGCAGTCAACACGTTTCTAGGTACATTCCGTGCGGAT
droKik1 scf7180000302544:999371-999398 - AGCCGGACAGTGGAGACCGGGTATCTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13117:2759012-2759050 - CGCCGAACAGTGTCCACTGGCTATGATGAAT----CAGTTGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396696:373643-373673 + CGCCAAACAGTGTGACTTCCCTATAATGAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XL_group1e:10898083-10898107 - CGTCCCACAGTGAGCACTGGCTATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_14:340041-340134 - CGCCTCACAGTGAGCACTGGCTATGGTATTTGCT----------T-------GGGAAAACTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------G----TATCATTTCCGCAACAGATCTACCCCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACACACATCCCATCCCCAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGTCGTACAGTGGATCCCGCCTACGTTGG------------ATTT--GGGTTGATAAGATCCAGGTATCCCC---------------------------CA----TCG---CCGTATCTGCTCTCAAT--CCCATCACCGATCTTCGTGAGTTAATCAGCAAAAA---GCTCACGTTCGGGGTTTCCTTACCCACCTACACCCAGAGAAA-------------AGATCACT--T------------------------CAT-AAATTTATCA-GC-GGCAGCTCTTCA-----------AGTAACT-TGGAATTCCCAGCT-TATC--TCATTGGGTAATTTGAATGGAACGTTGGGAGATAATTCACAAATGGAA-AACATTTACCCAATGACTTATTTA------------------------------------------------------------------------------------------------------------------------------CTCGTTTTATGACAACACTTTG----------------------------------------TACCATCTTGCAGCTTTTTTTCTTCGAGTGTAGAC--CACATTTTCGGGCACATTCGGTGCGGATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................AACT-TGGAATTCCCA................................................................................................................................................................................................................................................................................................................................................152139.502790000008600265000000
..............................................................................................................................................................................................................................................................................................................AACT-TGGAATTCCCAGT..............................................................................................................................................................................................................................................................................................................................................17249.5099000000000099000000
..............................................................................................................................................................................................................................................................................................................AACT-TGGAATTCCCAG...............................................................................................................................................................................................................................................................................................................................................16228.5057000000000057000000
..............................................................................................................................................................................................................................................................................................................AACT-TGGAATTCCCAGTA-............................................................................................................................................................................................................................................................................................................................................181115.0916600001530110011000000
...............................................................................................................................................................................................................................................................................................................ACT-TGGAATTCCCAG...............................................................................................................................................................................................................................................................................................................................................15210.0020000000000020000000
...............................................................................................................................................................................................................................................................................................................ACT-TGGAATTCCCAGT..............................................................................................................................................................................................................................................................................................................................................1657.0035000000000035000000
................................................................................................................................................................................................................................................................................................................................................TAATTTGAATGGAACGTTGGG.........................................................................................................................................................................................................................................................................................................2113.00300000000000003000
..............................................................................................................................................................................................................................................................................................................AACT-TGGAATTCCCAGG..............................................................................................................................................................................................................................................................................................................................................1732.33700000000007000000
.........................................................................................................................................................AATCAGCAAAAA---GCTCACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200002000000000000
.................................................................................................................................................................................................................................................................................................................................................AATTTGAATGGAACGTTGGGAA.......................................................................................................................................................................................................................................................................................................2211.00100000000000001000
.............................................................................................................................................................................................................................................................................................................TAACT-TGGAATTCCC.................................................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
..............................................................................................................................................................................................................................................................................................................AACT-TGGAATTCCCAGCT-............................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
...............................................................................................................................................................................................................................................................................................................ACT-TGGAATTCCCAGCT-............................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
................................................................................................................................................................................................................................................................................................................CT-TGGAATTCCCAGCT-............................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
..............................................................................................................................................................................................................................................................................................................AACT-TGGAATTCCCG................................................................................................................................................................................................................................................................................................................................................15150.8012000000000012000000
..............................................................................................................................................................................................................................................................................................................AACT-TGGAATTCCCAGCA-............................................................................................................................................................................................................................................................................................................................................1840.75300000000003000000
...............................................................................................................................................................................................................................................................................................................ACT-TGGAATTCCCAGTA-............................................................................................................................................................................................................................................................................................................................................17200.601200000010119000000
..............................................................................................................................................................................................................................................................................................................AACT-TGGAATTCCCAGCG-............................................................................................................................................................................................................................................................................................................................................1820.50100000000001000000
...............................................................................................................................................................................................................................................................................................................ACT-TGGAATTCCCAGG..............................................................................................................................................................................................................................................................................................................................................1640.50200000000002000000
...................................................................................................................................................................................................................................................................................................................TGGAATTCCCAGCT-T...........................................................................................................................................................................................................................................................................................................................................1520.50100000000001000000
..............................................................................................................................................................................................................................................................................................................AACT-TGGAATTCCCAT...............................................................................................................................................................................................................................................................................................................................................1670.43300000000003000000
................................................................................................................................................................................................................................................................................................................CT-TGGAATTCCCAGT..............................................................................................................................................................................................................................................................................................................................................15140.43600000000006000000
...............................................................................................................................................................................................................................................................................................................ACT-TGGAATTCCCAGCG-............................................................................................................................................................................................................................................................................................................................................1730.33100000000001000000
................................................................................................................................................................................................................................................................................................................CT-TGGAATTCCCAGC..............................................................................................................................................................................................................................................................................................................................................1530.33100000000001000000
..............................................................................................................................................................................................................................................................................................................AACT-TGGAATTCCCAGA..............................................................................................................................................................................................................................................................................................................................................1730.33100000010000000000
..............................................................................................................................................................................................................................................................................................................AACT-TGGAATTCCCAC...............................................................................................................................................................................................................................................................................................................................................1640.25100000000001000000
..............................................................................................................................................................................................................................................................................................................AACT-TGGAATTCCCAGAG-............................................................................................................................................................................................................................................................................................................................................1860.17100000000001000000
..............................................................................................................................................................................................................................................................................................................AACT-TGGAATTCCCAGTG-............................................................................................................................................................................................................................................................................................................................................18100.10100000000001000000
.................................................................................................................................................................................................................................................................................................................T-TGGAATTCCCAGCG-............................................................................................................................................................................................................................................................................................................................................15190.05100000000001000000
..............................................................................................................................................................................................................................................................................................................AACT-TGGAATTCCCATG..............................................................................................................................................................................................................................................................................................................................................17200.05100000000001000000
droSec2
CGTCGTACAGTGGATCCCGCCTACGTTGG------------ATTT--GGATTGATAAGATCCAGGTATCCCC---------------------------TA----TCG---CCATATCAGCTCTTTAT--CCCATCAACGATCTTCGTGAGTTAATCAGCAAAAA---GCTCACGTTCGGGGTTTCCTTACCCACCTACACCCAGAGAAA-------------AGATCACT--T-------------------CATACCAT-AAATTTATCA-GC-GGCAGCTCTTCA-----------AGTAACT-TGGAATTCCCAGCT-TATC--TCATTGGGTAATTTGAATGGAACGTTGGGAGATAATTCACAAATGGAA-AACATTTACCCAATGACTTATTTA------------------------------------------------------------------------------------------------------------------------------CTCGTTTTATGACAACACTTTG----------------------------------------TACCATCTTGCAGCTTTTTTTCTTCGAGTGTAGAC--CACATTTTTGGTCACATTCGGTGCGGATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
CGTCGTACAGTGGACCCCGCCTATGTTGGCCGCAATGATCGATTT--GGGTTGATAAGATCCTGGCATCCCCATAT-ATAGT-TATATCTATGTTCCCCTA----TCG---CCGTATCTGCTCTCTATGTTCTATCAACGATCTTCGTGAGTTAATCAGCAAAAAAGAGCTCACGTTCGGGATTTCCTTAC----CTACACGCAGAGAAA------------AAGATCACT--T------------------------CAT-AAATTTATCCAGC-GGCAGCTCATCA-----------AGTAACG-TGGAATTCCCAGCT-TATC--GCATTGGGTAATTTGAATGGAGCGCTGGTAGATAATTCACAAATGGAA-AACATTTACCCAATGACTTATTTA------------------------------------------------------------------------------------------------------------------------------CTCGTTTTATAAC-----------------------------------------------------ATCTTGCAGCATTTTCTCTTCGAGTGCAGAC--TATATTTTTGGGTAAACGCCGTGCTGATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................T-TATC--GCATTGGGTAATTTGAATGGAGC...............................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................CTATCAACGATCTTCGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................G-TGGAATTCCCAGCT-TAT.........................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................ATC--GCATTGGGTAATTTGAATGGAGCG..............................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCTCTTCGAGTGCAGAC--............................2111.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TATC--GCATTGGGTAATTTGAATGGAGC...............................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TC--GCATTGGGTAATTTGAATGGAGC...............................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................GTTGGCCGCAATGATCGATTT--GGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................GCATTGGGTAATTTGAATGGA.................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CGCCGTACAGTGGACCCCACATACGTTGGCCGT--TGGTCTATTTTTGGTTTGATAA-ATGCAGGCATCCCCAAAG-CTG------ATTTATATCTGCCTA----TCT---TGGTATCCGCTGT------CATATCAACGA-----------------GCAAAAA---GCTCGCATTCGGGGTTTCCTTA--------CACCCAGAGAGA-----------AAAGATCACT--T------------------------CAT-AACTTTATCA-CC-AGCAGCTTTTCA-----------AGTAACG-TGGAATTCCCAGCT-TATC--TCAT-AGGTAATTTGAATGGAACGCTGGATGATATTACAGAAATGGAA-AACATTTACCTAATGACTTATTTA------------------------------------------------------------------------------------------------------------------------------CTCGTACTATGACACCACTTTGGGCAACAAACATGGACGCTTTTGCCCCACTTGATGTT-------------------------------------C--CACATTTTCGGGTACACTCGGTGCGGATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................ATCAACGA-----------------GCAAAAA---GCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
droYak3
CGCCGTACAGTGGACCCCACCTACGTTGGCT-------------T--GGGTTGATAA-ATCCAGGTATGCCCACAG-CTAGTATATATCTATATCTACCTA----TCG---GGGTATCTGCTGT------CCTATCAACGATCTTCGTGTGTTAATCAGCAAACA---GCTCGCATTCGGGGTTTCCTTA--------CACGCAGAGAAATGACAAAGAGGAAAGATCACT--T------------------------CAT-AAATTTATCA-CC-AGCGGCTTTTCA-----------AGTAACA-TGGAATTCCCAGCT-TATC--TCAT-AGGTAATTTGAATGGAACGCTAGCAGATAATTCCGCAATGGAA-AACATTTACCTAATGACTTATTTA------------------------------------------------------------------------------------------------------------------------------CTCGCATTATGACACCACTTTGAGCAACAAACATGGACGCTTTTGGCTCATTGGATGTTCGTTACCATCTTGAAGTTAATTTTTTTCGAGTGTGGAC--TAGATTTTTGGGTACACACCGTGCGGATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
CGCCGCAGAGTGAGGACTCCCTACGATGTCC--C-CACTTTATTTCA--GGTGATAA-ATTCATGTATCCACTTGGGGT-----TTATCTAGATCTCTCTATATATAGGGATGGTATCTGCTTG------CTTATCAGCAATCTTTCAGAGTTAATCAGAAGAAAA--ACACTGGCTAGGGGTTTCCTTATAATGAAAAAGAAAGAAAAA-------------GGCTTA---------------------ATCTACGGTAA-AATTTTATCA-CCCACTAGCTTGTTAAATTACAAAATGGAAACC-TGGAATTCCCATGT-TATC--TCAC-TGGTAA-------GGTGCACTAAAAGTTAATTAAGAAATGGAA-AACATTTACCTAATGACTT-TTTA------------------------------------------------------------------------------------------------------------------------------CTTCCAGGATGGCAGAACTT-----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CGAGGGACAGTGGGCCCTGGCTATGCTGGCCGC--CACTCCACTTGGGGGCTGGTAA-ATCCATGTATCCACATGG-CT-----TTATCTAT--------------C------------GCTGT------CTTATCAGCCATCCTCTG--------------------CATCCCATTCGGAATTCCCTTA--------CACCAGGGGAAA------------AATATT---CCTATGATT----TAAGAAACCCACGATTTTGTTTTTATTG-CC-ACCTGGTTTTCTAATTAG-----AGTAACC-TGGAATTCCCAGCT-TATC--TCAC-CGGTAGTATAAATGGGACGCTAAAAGTTAATTAAGAAATGGAA-AACAATTACCTAATGACTTATTTA----CATA----------------------------------------------------------------------------------------------------------------------CTTCTATTGTGACAGCAGTT-----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
------ACAGTGGGCCCTGGCTACGTTGCCC----CAGTCTATTTGC--CGTGGTGA-ATCTATGTTTCCGCACGG-TT-----TTATCTAC--CTTCGTA----TCG---GGGTATCTTCTGC------CTTATCTTTCATCTTTGGGGGTTACTG-----------------ATTCGGGGTTTCCTTA--------CACCCAGAAAAA------------AGTATTATTCCT--------------ATATATATGATAT-AA-CTTATTA-GT-AGTCGCTTTTCAAGTTGC--------AAAA-TGGAATTCCCAGCTTTATC--TCTG-AGGTAATATGAATGGCACGCTAAAAGTTAATTAAGAAATGTAAAAACTTTTCTTTAATGACTTATTTA------------------------------------------------------------------------------------------------------------------------------CCTGTACTACGGCAGCAGTTT----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CGCCGTACAGTGGACTCTGGCTATATTGTCGATC-CAGTTTAGCTCC--GGTGGTAA-ATGCATGTATCCACATGG-GT-----TTATCTAA--CTATGTA----GCT---GGGTATCTGCTGT------CTTATCAGCGATCTTCGAGAGTTAATCAACAAAAAA--G-----------------------------CACCCAGAAAA--------------AGCTCATT-------------TAACAAACTCACGATAT-AATTTTATCA-CC-ACCAGCTTTTCAAATTACAAAATAGAAACCAAAAAATTCCTTGGT-TATCGGTTAT-ACGTAATATAACTGACACGTTTTAAGTTAATTAAGAAACGGAA-AACCTTTTCCTT----TTTATTAA------------------------------------------------------------------------------------------------------------------------------CTTGTATTATGGCAGCAGTT-----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CGCCGGACAGTGGGCTCTGGGTATAATGTCTATC-CAGTCTATCTCC--GGTGATAA-ATCCATGTATCCACATGG-T---------------------TA----TCT---GGGTATCTGCTGT------CTTATCAGCTATCTTCGAGACCTAATCAACATTTG---GCAGCTGTTGGGGTTTTCCTTA--------AACACAGAAAAA-------------AGCTCA----TACCATT----AAACAAACCCACAATAT-AATTTTATCA-CT-ACTAGCTTTTCAAATTACAAAATAGAAACG-TGAAATTACCAGGT-TATC--GCAC-AGGTAATACAAATGGCACGCTAAAAGTTAATTAAGAAATGGAA-AACATTTATCTTATGAATAATTGT------------------------------------------------------------------------------------------------------------------------------CT--ATTTATGCCGGCAGTT-----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CGCCGGACAGTGAGCCCAGACTATGTTGGCC----CAGTCCATCGCC--GGTGGTAA-ATCCATGTATCCACAAGA-T--------ATC-----TTGTGTA----TCT---CAATATCTGTTGC------CTTATCAGTGA----------------------------------TACGGGGTTTCCTTA--------CACCCTGCATAA------------AATATT---CATACTATT----TGCGAAACTAACGACAT--------------------CACACGA-------ATATAAAAACT-GGAAACGTTCAGGT-TATC--TCAC-AGGTAACACAAGTGGAATGCTTAAAGTCAATTGGGAAAGGGAA-AACATTTGCCTAATGACTTACT-ACTTACTTACTTTCAGAAACTCTCAAACTTAAATAATTTACTTTAACTATAGAGTGAACACAGTAAGTTTGTTTTGTATCATAAAACAAACTGTTTTATTCATTTTGGATTTTGGTATTTTATCAAGCTCGGATTGTGAAA-TAATTTC----------------------------------------TACAATCTTGAAGTGTT--TTTTTTGAGTGCAGTCAACACGTTTCTAGGTACATTCCGTGCGGATSizeHit CountTotal NormTotal
No Reads
droKik1
AGCCGGACAGTGGAGACCGGGTATCTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
CGCCGAACAGTGTCCACTGGCTATGATGAAT----CAGTTGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CGCCAAACAGTGTGACTTCCCTATAATGAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
CGTCCCACAGTGAGCACTGGCTATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CGCCTCACAGTGAGCACTGGCTATGGTATTTGCT----------T-------GGGAAAACTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------G----TATCATTTCCGCAACAGATCTACCCCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACACACATCCCATCCCCATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads

Generated: 05/18/2015 at 11:28 PM