ID:

dsi_20548

 Coordinate:

3l:7948395-7948653 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.2 -40.2 -40.2

Flybase annnotation

exon [3l_7948280_7948394_-]; CDS [3l_7948280_7948394_-]; CDS [3l_7948654_7948748_-]; exon [3l_7948654_7948748_-]; intron [3l_7948395_7948653_-]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
mature
  1. 2l:20702801-20702815 -
  2. 2l:21683797-21683811 -
  3. 2l:22609930-22609944 +
  4. 2l:22730858-22730872 +
  5. 2r:276975-276989 +
  6. 2r:378479-378493 +
  7. 2r:849924-849938 +
  8. 2r:1726159-1726173 +
  9. dsi_20548  3l:7948511-7948525 -
  10. 3l:19452341-19452355 +
  11. 3l:23075220-23075234 +
  12. 3l:23516688-23516702 -
  13. node_65150:79-93 -
star

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCGCAGATCGACTACATCTGGGATCCCAATTTGCCCAGGGAACTGAGAGGGTATGATATTTGAGCATATGCATATTTTGTAAATACTGAGGTTGATCAGGCAAATATCTACAACTTTTACTATAATACAAGTTAATGATGGTTGTTTAAGAGCCTCTTTCAGTCAAATAATTATTAAAAAATATTTAGAAAGGGAAAATCTGCTGTATTTAAACCTTTTATTACTATGAGATTGTCTTAGCTTAGGTATTTTGTAGATACAAATCAACCATCAACGTACTTAGAGTATCCTTTCTATCTTTCTGCACAGCTACAACCTGTCGACTTATCCCTTTCTGTCCACTGTGCCGCCCATGGACG
**************************************************(((.((((((((......((((.....))))....((((......)))).)))))))))))..................(((...(((((((((.........(((((((.......(((.((((....)))).))))))))))...((((((.((((((((..............(((((...)))))..))))))))...))))))......)))))))))....)))(((((......))))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body
......................................................................................................................................................................................................TGTGCTGTATTTAAACC................................................................................................................................................ 17 1 2 0.50 1 0 1 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................GTCGACGGTGGCGCCCATGGA.. 21 3 2 0.50 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................ACTAGGAGGTTGTCTTA........................................................................................................................ 17 2 4 0.25 1 0 0 1 0 0 0
..................................................................................................................................................................................AAATATTTAGAAAGG...................................................................................................................................................................... 15 0 13 0.15 2 1 0 0 0 1 0
..............................................................................................................................................................................................................................ACTAGGAGGTTGTCT.......................................................................................................................... 15 2 20 0.10 2 0 0 2 0 0 0
................................................................................................................................................TTTAAGAGCCTCTTTAGCTC................................................................................................................................................................................................... 20 3 18 0.06 1 0 0 0 1 0 0
...............................AGCCCAGGGAACTGA......................................................................................................................................................................................................................................................................................................................... 15 1 18 0.06 1 0 0 1 0 0 0
...................................CAGGGAAGTGAGAGGGC................................................................................................................................................................................................................................................................................................................... 17 2 18 0.06 1 0 0 0 1 0 0
...................................................................................................................................................................................................................................................................................................................................CTAATCCCTCTCTGTCCGC................. 19 3 19 0.05 1 0 0 1 0 0 0
..........................................................................................................................................................................................................................................................................................................................................CTTTTTGTACACTGTGCCT.......... 19 3 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

GGCGTCTAGCTGATGTAGACCCTAGGGTTAAACGGGTCCCTTGACTCTCCCATACTATAAACTCGTATACGTATAAAACATTTATGACTCCAACTAGTCCGTTTATAGATGTTGAAAATGATATTATGTTCAATTACTACCAACAAATTCTCGGAGAAAGTCAGTTTATTAATAATTTTTTATAAATCTTTCCCTTTTAGACGACATAAATTTGGAAAATAATGATACTCTAACAGAATCGAATCCATAAAACATCTATGTTTAGTTGGTAGTTGCATGAATCTCATAGGAAAGATAGAAAGACGTGTCGATGTTGGACAGCTGAATAGGGAAAGACAGGTGACACGGCGGGTACCTGC
**************************************************(((.((((((((......((((.....))))....((((......)))).)))))))))))..................(((...(((((((((.........(((((((.......(((.((((....)))).))))))))))...((((((.((((((((..............(((((...)))))..))))))))...))))))......)))))))))....)))(((((......))))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 M053
female body
.......................................................................................................TACAGATGTAGAAAATGTTATT.......................................................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................TGAATAGGGACAGACAAG................... 18 2 3 0.33 1 0 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................TGGTGGACAGCTGAAGAGGAA........................... 21 3 4 0.25 1 0 0 0 1 0 0
......................................................................................................................................................................................................................................................................................................................................TAGGGCAAGCCAGGTGAC............... 18 2 5 0.20 1 0 0 1 0 0 0
....................................................................................................................................................................................................................................................................................................AGATAGAAAGAAGTG.................................................... 15 1 14 0.14 2 2 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................TTGATGATGGACAGATGAAT................................ 20 3 8 0.13 1 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................TGAATAGGGACAGACAT.................... 17 2 11 0.09 1 0 1 0 0 0 0
.....................................................................................................TTTATAGATGCTTAAAATG............................................................................................................................................................................................................................................... 19 2 13 0.08 1 0 0 0 0 1 0
.............................................................................................................................................................................AATTTTTTATAAATCT.......................................................................................................................................................................... 16 0 13 0.08 1 0 0 1 0 0 0
................................................................................................................................................................................................................................................................TAGGTTTAGTTGGTAG....................................................................................... 16 1 14 0.07 1 0 1 0 0 0 0
.............................................................................................................................................................................AATTTTTTATAAATC........................................................................................................................................................................... 15 0 15 0.07 1 0 1 0 0 0 0
........................................................................................................................................................................TTAATAATTTTTTAT................................................................................................................................................................................ 15 0 20 0.05 1 0 0 0 0 1 0
..............................................................................................................................................................................................................................................................................................TAAGAAAAATAGAAAGAC....................................................... 18 2 20 0.05 1 0 0 1 0 0 0
.........................................................................................................TAGATCTTGAAAATTATA............................................................................................................................................................................................................................................ 18 2 20 0.05 1 0 0 0 0 0 1
...............................................TCCCATACTCTAAGCTTG...................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0

Generated: 04/24/2015 at 10:40 AM