ID:

dsi_20529

 Coordinate:

3l:15727499-15727699 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-29.8 -29.7 -29.7

Flybase annnotation

exon [3l_15727337_15727498_+]; CDS [3l_15727337_15727498_+]; CDS [3l_15727700_15728287_+]; exon [3l_15727700_15728287_+]; intron [3l_15727499_15727699_+]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTGTGGTGATCAACTCACACATGGCGGGCGTGAGACCGCAGAGTCCATCGGTGAGTATGAAGGATAATGTTGCTATTACTACGGTTGTTGTGGTGGGTTCTTCCCTACTAACTCACAAAGCTCCCTAACCCAGCCACGCTCCTCACAAACACGCATGTGCACAGCCCACCATTCACGCACACCATACACCATACACACCATGCTCCAGCAGATGAAAACCGAGTCTCTCTGTGTTCTCTCTTTACTTTTAGATAACTTTAAGCACACTTAATACGGGTCAGACCCCGGCATTGCTGGTCAA
*********************************************************....(((..(((.((.(((...((.((((((.((((((((((....................(((.........))).........((((........))))...))))))))))....))).))).))....)))..)).)))..)))((.(((.(((.((.(((...))).)).)))))))).....******************************************************* 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 M053
female body
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
.......................................................................................................................................................................................................................................................TTAGATAACTGAAAGCACA................................... 19 2 1 2.00 2 2 0 0 0 0 0 0 0
GTGTGGTGATCAACTCACA.......................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0
.........................................................TGAAGGATAATGTTGCTATT................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................ATACGGGTCAGACCCCGGCATTG........ 23 0 1 1.00 1 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................TCTCTCTGTGTTCTCTCTTTACT....................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0
...........AACTCACACATGGCGGGC................................................................................................................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................ACACTTAATACGGGT....................... 15 0 1 1.00 1 0 0 0 0 1 0 0 0
................................................................................ACGGGTGGTGTGGTGGGTTTT........................................................................................................................................................................................................ 21 3 6 0.17 1 0 0 0 0 0 1 0 0
.........................................AGTCTATCGGTTAGGATGA................................................................................................................................................................................................................................................. 19 3 9 0.11 1 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................................TGTTCGGTCTTTACTTCTA................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1
..................................................GTGAGTAGGAAGGTAAATG........................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 1 0 0 0 0 0

Anti-sense strand reads

CACACCACTAGTTGAGTGTGTACCGCCCGCACTCTGGCGTCTCAGGTAGCCACTCATACTTCCTATTACAACGATAATGATGCCAACAACACCACCCAAGAAGGGATGATTGAGTGTTTCGAGGGATTGGGTCGGTGCGAGGAGTGTTTGTGCGTACACGTGTCGGGTGGTAAGTGCGTGTGGTATGTGGTATGTGTGGTACGAGGTCGTCTACTTTTGGCTCAGAGAGACACAAGAGAGAAATGAAAATCTATTGAAATTCGTGTGAATTATGCCCAGTCTGGGGCCGTAACGACCAGTT
*******************************************************....(((..(((.((.(((...((.((((((.((((((((((....................(((.........))).........((((........))))...))))))))))....))).))).))....)))..)).)))..)))((.(((.(((.((.(((...))).)).)))))))).....********************************************************* 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M025
embryo
 SRR902009
testis
...............................................................................................................................................................................................................................................................GAAATTCGTGTGAATTAT............................ 18 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTTGGCTCAGGGAGA....................................................................... 15 1 2 0.50 1 0 1 0 0 0 0 0
..................................................................................................................TGTTTGGAGGGATTGTGT......................................................................................................................................................................... 18 2 2 0.50 1 0 1 0 0 0 0 0
.................................................................................................AAGAAGGGATGACTG............................................................................................................................................................................................. 15 1 3 0.33 1 0 0 1 0 0 0 0
....................................................................................................................................................................GGGTGGTAAGTGGTTGTGGT..................................................................................................................... 20 2 4 0.25 1 0 0 1 0 0 0 0
....................................................................................................................................................................GAGTGGTCAGTGCATGTGGTA.................................................................................................................... 21 3 5 0.20 1 0 0 0 1 0 0 0
...................................................................................CAACAACAGCGCCCAAGAACG..................................................................................................................................................................................................... 21 3 9 0.11 1 0 0 0 0 1 0 0
.............................................................................................................................ATAGGGTGGGTGCGAGGCGT............................................................................................................................................................ 20 3 16 0.06 1 0 0 0 0 0 0 1
....................................................................CAATCATAATGCTGCCAAC...................................................................................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 1 0
............TGAGCGTGCACCGCCCCCA.............................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 1 0 0 0 0

Generated: 04/23/2015 at 07:33 PM