ID:

dsi_20518

Coordinate:

3r:10217394-10217543 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-21.0	-20.7	-20.6

Flybase annnotation

CDS [3r_10217197_10217364_-]; five_prime_UTR [3r_10217365_10217393_-]; exon [3r_10217197_10217393_-]; intron [3r_10217394_10218612_-]

No Repeatable elements found

mature

star

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CATCGAATTCTTTAAAAGAATCTATGTCAAGGATATTAAAACAGATTTTGTATATTTTTGTGAAACCACTTTGATTGATTATAGGCCCATTCAAACTCATTTCCTGTACATTTAATTAAGCCAGTGACCTAAGTTGGGTGTCAATCAATTGATTCCGGTCTTTATTAACAGTTCCAAGCATCAATGTCAGCCAAGTAAAGCCTGAGGAAGTGACTCCCTCTGCCCCAAGATGTACGGACTGCTGCTGGAG ************************************************.........((((((((...((((((((((....(((((.......(((((..((.............))..))))).......)))))...))))))))))....))).)))))...................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	O001 Testis	M024 male body	SRR553487 NRT_0-2 hours eggs	M023 head	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries
...................................................................................................................CTAAGCCAGTTACCTAAGCTG..................................................................................................................	21	3	1	1.00	1	1	0	0	0	0	0	0
.....................CTATGTCAAGGATATTAA...................................................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0
...............................................................................................................................................................CCTTATTATCAGTTCCCAGC.......................................................................	20	3	2	0.50	1	0	0	1	0	0	0	0
........................................................................................................................................................TTCCGGTCTTTATTAAA.................................................................................	17	1	2	0.50	1	1	0	0	0	0	0	0
.......................................................................................................................................................ATTCCGGTCTTTATT....................................................................................	15	0	2	0.50	1	1	0	0	0	0	0	0
........................................................................................................................................................TTCCGGTCTTTATAAA..................................................................................	16	1	4	0.25	1	0	0	0	1	0	0	0
....................................................................CTATGAGTGATTCTAGGC....................................................................................................................................................................	18	3	20	0.20	4	0	0	0	0	4	0	0
.................GAATGTATGTCGAGGATA.......................................................................................................................................................................................................................	18	2	6	0.17	1	0	0	0	0	0	1	0
...........................................................................................................................................ATCAATCAATTGATTTCGGCC..........................................................................................	21	3	7	0.14	1	0	0	1	0	0	0	0
......................................................................................................................................................GATTCCGGGCTATATTACCA................................................................................	20	3	7	0.14	1	0	0	0	1	0	0	0
........................................................................................................................................................TTCCGGGCTTTATTA...................................................................................	15	1	8	0.13	1	1	0	0	0	0	0	0
........................................................................................................................................................TTCCGGTCTTTAGAAA..................................................................................	16	2	20	0.10	2	2	0	0	0	0	0	0
...................................................................................................................TTAAGCCAGTTACCT........................................................................................................................	15	1	12	0.08	1	0	0	0	0	0	0	1
................................................................................................................................................................CTTATTATCAGTTCCCAGC.......................................................................	19	3	18	0.06	1	0	0	1	0	0	0	0
.......................................................................TGCTTGATCATAGGCC...................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	1

Anti-sense strand reads

GTAGCTTAAGAAATTTTCTTAGATACAGTTCCTATAATTTTGTCTAAAACATATAAAAACACTTTGGTGAAACTAACTAATATCCGGGTAAGTTTGAGTAAAGGACATGTAAATTAATTCGGTCACTGGATTCAACCCACAGTTAGTTAACTAAGGCCAGAAATAATTGTCAAGGTTCGTAGTTACAGTCGGTTCATTTCGGACTCCTTCACTGAGGGAGACGGGGTTCTACATGCCTGACGACGACCTC ************************************************.........((((((((...((((((((((....(((((.......(((((..((.............))..))))).......)))))...))))))))))....))).)))))...................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	M023 head	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M025 embryo	M053 female body	GSM343915 embryo
..........AAATTTTCTTAGATACAG..............................................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................CGCGATTCTACATGCCAGAC.........	20	3	3	0.33	1	0	1	0	0	0	0	0
........................................................................................................................................................................GTCAGGGTTCGTACTTTCA...............................................................	19	3	14	0.14	2	0	0	0	2	0	0	0
.....................................................................................................................................................................AGTGTCAGGGTTCGTACTT..................................................................	19	3	18	0.11	2	0	0	0	0	0	1	1
......................................................................................................................................................................................................................AGGGAGACGTGGTTGTAAAT................	20	3	10	0.10	1	0	0	1	0	0	0	0
................................................................................................................................................................AAATCATTGTCAAGGCTCTT......................................................................	20	3	11	0.09	1	0	0	1	0	0	0	0
.......................................................................................................................................................................TGTTAGGGTTCGTAGTTTCA...............................................................	20	3	16	0.06	1	0	0	0	0	1	0	0

Generated: 04/24/2015 at 10:43 AM