ID:

dsi_20472

Coordinate:

3l:11387596-11387745 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-27.3	-27.3	-27.2

Flybase annnotation

CDS [3l_11387746_11389108_+]; exon [3l_11387746_11389108_+]; intron [3l_11387242_11387745_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GCCAAAGTAGAAATGTTTAATGACAAAGCTGATAGTTGATTTGCTAATTGATGGATACATTTATTTATTATCGAAAGATAAGTTCAAGTGCACTTGTACTTGTGTTTAGGTATCACTTGTTGGTTGTCTACCGATTAGAAAATATTAATTCAATAATAGAAAAGATTTAACTAATTAGAATGGTTTTCACCCATCTAAAGGTACCATCGGCATCGACCCCTTTTTCTGGGTGGCCAGGTTCTCACGGGCA ************************************************.(((((.....(((((...((((..((((((...((((((.(((((.((....)).)))))..))))))....))))))..))))....)))))...)))))......................(((((..(((....)))..)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
.............................................................................................................................................................AGAAAAGATTTAACTAATTAGAATGGT..................................................................	27	0	1	1.00	1	1	0	0	0
..................AATGACAAAGCTGAT.........................................................................................................................................................................................................................	15	0	3	0.33	1	0	1	0	0
.................................................GATGGATAGATTTATT.........................................................................................................................................................................................	16	1	5	0.20	1	0	1	0	0
.......................................................................................................................................................................................TGTTCACCCATCAAAAGG.................................................	18	2	5	0.20	1	0	0	1	0
...............................................................................................TTACTTGTGTTTAGG............................................................................................................................................	15	1	10	0.10	1	0	0	0	1

Anti-sense strand reads

CGGTTTCATCTTTACAAATTACTGTTTCGACTATCAACTAAACGATTAACTACCTATGTAAATAAATAATAGCTTTCTATTCAAGTTCACGTGAACATGAACACAAATCCATAGTGAACAACCAACAGATGGCTAATCTTTTATAATTAAGTTATTATCTTTTCTAAATTGATTAATCTTACCAAAAGTGGGTAGATTTCCATGGTAGCCGTAGCTGGGGAAAAAGACCCACCGGTCCAAGAGTGCCCGT ************************************************.(((((.....(((((...((((..((((((...((((((.(((((.((....)).)))))..))))))....))))))..))))....)))))...)))))......................(((((..(((....)))..)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries
..................................................................................................................................................................................................................................ACCCACCGGTCCAAGAGTGCC...	21	0	1	2.00	2	2	0	0	0	0
...............AAATCACTGTTTCAACTAT........................................................................................................................................................................................................................	19	2	3	0.33	1	0	1	0	0	0
...........................................................................................................................................................................................................GGTAGCTGTAGCGTGGGAAAA..........................	21	3	4	0.25	1	0	0	1	0	0
.........................................................................................................................CCAACAGGTGGCGAATC................................................................................................................	17	2	6	0.17	1	0	0	0	1	0
.....................................................................TAGCTTTCTATTCGACTTC..................................................................................................................................................................	19	2	7	0.14	1	0	0	0	0	1

Generated: 04/24/2015 at 04:04 AM