ID:

dsi_20435

 Coordinate:

2r:4788267-4788347 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-13.6 -13.5 -13.2

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CAGTCGACCAGTCAGTCGAAGTCCGCTGGCAAGCAAGGCTACTCGCCCTCGTACTGGGCCGGACAGAACTAGCTTCCGGAGAACACGATCTGGCGGCCACTGCAGATCGCCCGCGCGAACGACATTTATAGCCTTCGCAGCAATAGCAGCAGCAGCACCACCACAACAACAACCACCACCA
******************************************************..(((((..((((......(((....))).....)))).)))))...******************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 GSM343915
embryo
................................................................................GAACACGATCTGGCGGCCACT................................................................................ 21 0 1 5.00 5 3 2 0 0 0 0 0 0 0 0 0 0
.................................................CGTACTGGGCCGGACAGAACT............................................................................................................... 21 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0
........................................................GGCCGGACAGAACTAGCTTCC........................................................................................................ 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
..............................................CCTCGTACTGGGCCGGAC..................................................................................................................... 18 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
................................................TCGTACTGGGCCGGACAGAACTAGCT........................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
......................................................TGGGCCGGACAGAAC................................................................................................................ 15 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.................GAAGTCCGCTGGCAAGCAAG................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................TCCGGAGAACACGATCTGGCGGCCAC................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................CGGACAGAACTAGCTTCC........................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................ACACGATCTGGCGGCCAC................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....GACCAGTCAGTCGAAGTCCGCTG......................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................CCTTCGCAGCAATAGCA................................. 17 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................CTGCAGATCGCCCGCGCGAACGACAA........................................................ 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................TCCGGAGAACACGATCTGGCGGCCACT................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................CCCGCGCGAACGACATTTATAGCCA............................................... 25 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................CCGGACAGAACTAGCTTCC........................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................GCAAGGCTACTCGCCCTCGTACTGGGCC......................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................CGTACTGGGCCGGACAGAACC............................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....GACCAGTCAGTCGAAGTCCGCT.......................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TATAGCCTTCGCAGCAATAGCAGCAGC............................ 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.................GAAGTCCGCTGGCAAGCAA................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................TCCGGAGAACACGATCTGGCGGT.................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..............GTCGAAGTCCGCTGGCAAGCA.................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................CTGGGCCGGACAGAACTAGCT........................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................ATCTGGCGGCCACTGCAGA........................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................TCCGGAGAACACGATCTGGCG...................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
......................................CTACTCGCCCTCGTACTGG............................................................................................................................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................AACACGATCTGGCGGCCACTGCAGA........................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................ACCACCACAACAACAACCACCAC.. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
......................................CTACTCGCCCTCGTACTGGGCCGGACAG................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................GGAGAACACGATCTGGCGGCCACT................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................TTCCGGAGAACACGATCTGGCG...................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................ACAGAACTAGCTTCCGGAGA................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................TTATAGCCTTCGCAGCAATAGCAGC............................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...............................AGCAAGGCTACTCGCCCTCGTACTGG............................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................GGAGAACACGATCTGGCGGCCACTG............................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................CTGGCGGCCACTGCAGATCGC....................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................GAACACGATCTGGCGGCCCCTGG.............................................................................. 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................GCCACTGCAGATCGCCCGCG.................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................CGAAGTCCGCTGGCAAGCAAGGCTAC........................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................CCACTGCAGATCGCCCGCGCG................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
.............................................................................GGAGAACACGATCTGGCGGCC................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................TGCAGATCGCCCGCGCGAACGACATT....................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
........AAGTCAGTCGAAGTCC............................................................................................................................................................. 16 1 4 0.50 2 0 0 0 0 0 0 0 0 0 2 0 0
.............AGTCGAAGTCCGTTGGAAAGCG.................................................................................................................................................. 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0
........CAGTCAGTCGAATTCC............................................................................................................................................................. 16 1 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................AACACGATCTGGAGG..................................................................................... 15 1 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................TGGCGCACACTGCAAATCGC....................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................GCAGATCGTCTGCGCGAA.............................................................. 18 2 19 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
.............................CAAGCAAGGTTACCCG........................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

GTCAGCTGGTCAGTCAGCTTCAGGCGACCGTTCGTTCCGATGAGCGGGAGCATGACCCGGCCTGTCTTGATCGAAGGCCTCTTGTGCTAGACCGCCGGTGACGTCTAGCGGGCGCGCTTGCTGTAAATATCGGAAGCGTCGTTATCGTCGTCGTCGTGGTGGTGTTGTTGTTGGTGGTGGT
********************************************************************************..(((((..((((......(((....))).....)))).)))))...****************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
...........................................................................GGCCTCTTGTGCTAGACCGC...................................................................................... 20 0 1 2.00 2 2 0 0 0
.....CTGGTCAGTCAGCTTCAGGCG........................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0
........................................................................................................TTAGCGGGCGCGCTTGCTGTAA....................................................... 22 1 1 1.00 1 1 0 0 0
.................................................................CTTGGTCGAAGGCCT..................................................................................................... 15 1 7 0.14 1 0 0 1 0
............................................AGGGAGCATGACTCGTCCT...................................................................................................................... 19 3 11 0.09 1 0 0 0 1
...................................TCCGATGAGCAGTCGCAT................................................................................................................................ 18 3 20 0.05 1 0 0 1 0

Generated: 04/23/2015 at 04:30 AM