ID:

dsi_2043

 Coordinate:

3l:8197549-8197731 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-32.9 -32.8 -32.8

Flybase annnotation

CDS [3l_8197281_8197548_+]; exon [3l_8196788_8197548_+]; CDS [3l_8197732_8198294_+]; exon [3l_8197732_8198294_+]; intron [3l_8197549_8197731_+]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCGCTCGGATAACTACGTCACGGTGCAGCATCAATCGACGGTGATGGATGGTGAGTTCACCGATGGAATGAGCACATAGTTATTTTATTCTTTTTGCATTGGTTTCTATATTTTGCATGCCAGTAATTATGATTTGGGTATTCCCTTTTTGTTTTTCCCACCTTATGTTTGTGCTTGCACCCGTCCAGTTGAACGTGAGCCCATTACTGAGACCATTCCATCTGTTCCGAAAGGCTTCCTTGTGTACAGCAACTCCTGCCGCATCATGGAGGTGGATCCCTAC
**************************************************........((.(((((((((....((((((((((..........((((..(((......))).))))....))))))))))....(((....))).....(((((......(((((((((..(((.((....))..))).))))))))).........)))))))))))))).))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 GSM343915
embryo
 M023
head
.......................................................................................................................................................................................................................................AGGGTTCCATGTGAACAGCA................................ 20 3 1 13.00 13 10 3 0 0 0 0 0 0
......................................................................................................................................................................................................................................AAGGGTTCCATGTGAACAGCA................................ 21 3 1 2.00 2 2 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................TACAGCAACTCCTGCCGCATCATGGA............. 26 0 1 1.00 1 0 0 0 0 1 0 0 0
.............................ATCAATCGACGGTGATGGATGA........................................................................................................................................................................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0 0 0
........................................................................................................................................................................................CCAGTTGAACGTGAGCCCATT.............................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................TGTACAGCAACTCCTGCCGCATCATGG.............. 27 0 1 1.00 1 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................GGGTTCCATGTGAACAGCA................................ 19 3 12 0.75 9 9 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................ATCATGGAGGTAGAGCACTAC 21 3 3 0.33 1 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................................................ATCATGGAGGTAGAACACTA. 20 3 4 0.25 1 0 0 0 0 0 1 0 0
.........................................................................................................................................GCCGTCCCTTTTTGTTTTTCCC............................................................................................................................ 22 3 4 0.25 1 0 0 0 0 0 0 1 0
.............................................................GATGGAATGAGTACAC.............................................................................................................................................................................................................. 16 2 20 0.15 3 0 0 0 3 0 0 0 0
......................................................................................................................................................................................................................ATCCCATCTGTTCTGAAA................................................... 18 2 10 0.10 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................ATCATGGAAGTGGAT...... 15 1 11 0.09 1 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................................................ATCATGGAGGTGGAGCAC... 18 2 12 0.08 1 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................................................AACTTCTGCCGCAGAATGGA............. 20 3 15 0.07 1 1 0 0 0 0 0 0 0
.........................................................................................................................................GTAGTCCCTTTTTGTTTGTT.............................................................................................................................. 20 3 20 0.05 1 0 1 0 0 0 0 0 0
..........................................................................................TTTTTGCATTGAGTTCTA............................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 1 0 0 0

Anti-sense strand reads

CGCGAGCCTATTGATGCAGTGCCACGTCGTAGTTAGCTGCCACTACCTACCACTCAAGTGGCTACCTTACTCGTGTATCAATAAAATAAGAAAAACGTAACCAAAGATATAAAACGTACGGTCATTAATACTAAACCCATAAGGGAAAAACAAAAAGGGTGGAATACAAACACGAACGTGGGCAGGTCAACTTGCACTCGGGTAATGACTCTGGTAAGGTAGACAAGGCTTTCCGAAGGAACACATGTCGTTGAGGACGGCGTAGTACCTCCACCTAGGGATG
**************************************************........((.(((((((((....((((((((((..........((((..(((......))).))))....))))))))))....(((....))).....(((((......(((((((((..(((.((....))..))).))))))))).........)))))))))))))).))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body
.......................................................................................................................................................................................................................................................TCGTTGAGGACGGCGTAGTAC............... 21 0 1 1.00 1 0 1 0 0
..................................................................................................................................................................................................................CTGGTAAGGTAGACAAGGCTT.................................................... 21 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................................................................................................TCCGAAGGAACACATGTCGTT............................... 21 0 1 1.00 1 1 0 0 0
..................................................................................................................................................................................................................CTAGTACGGTAAACAAGGCTT.................................................... 21 3 1 1.00 1 0 0 1 0
....................GCCGCGTCCTAGTGAGCTG.................................................................................................................................................................................................................................................... 19 3 15 0.73 11 0 0 0 11
...........................................................................................................................................................AGGGAGGAATACAAA................................................................................................................. 15 1 10 0.20 2 0 2 0 0

Generated: 04/24/2015 at 10:45 AM