dsi_20408

############################################################################################################################################################################################################################################################################################################################## AGTGAGCTACCAAAAACCAATTACCACAGTTCCAATGCGCCCAACGAACGGTAAGCGCCATTCCAAGGAGAGCCCATAGCGAGCGAGAGAGATAGAAAAACGGTGAAGGTCGCGCTGCGAAAGAGCGAGATAATTGATTCGCAAGTTGGTGTTGGTGCATATTCATGTTCTAATCGCACCCATGTGCGTTCGTGTGTGTGTGTGTGCGAGCAGTGTTTATACAGCAAGCAACTGATATAATCGATCTTGATTCTCGACATCCCGCCAGTGAGACAAAAGAGTCGAGATCCGAGATCCGTCATTAAACCGGACAATCCA ***********************************************************************************************************************************************************************************........(((..(((((..((.(((..((.(((....))).))..)))))..)))))..)))..............**********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	M024 male body	M025 embryo	SRR618934 dsim w501 ovaries	M053 female body	M023 head	SRR553485 Chicharo_3 day-old ovaries	O001 Testis	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
........................................................................................................................................................................................................................................................................................GTCGAGATCCGAGATCCG....................	18	0	1	3.00	3	0	1	0	0	1	1	0	0	0	0
.....................................................................................................................................................................................................................................................CTTGATTCTCGACATCCCGCCAGTGAA..............................................	27	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................GACAAAAGAGTCGAGATCCGG..........................	21	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................AAAGAGTCGAGATCCGAGATC......................	21	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................ATCGATCTTGATTCTCGAC............................................................	19	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........AAAAACCAATTACCACAGT................................................................................................................................................................................................................................................................................................	19	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0
....................................GCGCCCAACGAACGGTAAGCGCC...................................................................................................................................................................................................................................................................	23	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................ATGTGCGTTCGTGTGTGTGTGT...................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................AGAGTCGAGATCCGAGATCCG....................	21	0	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...........................................................................................ATAGAAAAACGGTGAAGGTCGCGCTGC........................................................................................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................GATAGAAAAACGGTGAAG..................................................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................GCCCAACGAACGGTAAGCGC....................................................................................................................................................................................................................................................................	20	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................CTGATATAATCGATCTTGATTCTCGACA...........................................................	28	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GCCAGTGAGACAAAAGAGT....................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................ATCCGAGATCCGTCATTAAACCGGA.......	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................GTCGAGATCCGAGATCCGT...................	19	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................................................................AGCCCATAGCGAGCG.........................................................................................................................................................................................................................................	15	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................CAAAAGAGTCGAGATCCGAG.........................	20	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..................................................................................................AACGGTGAAGGTCGCGCTGCGAAAGAG.................................................................................................................................................................................................	27	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GCCAGTGAGACAAAAGAG.....................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................TGATTCTCGACATCCCGCCAGTGAG..............................................	25	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............................................................................................AGAAAAACGGTGAAGGTCGCGCTG.........................................................................................................................................................................................................	24	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................CATGTTCTAATCGCACCC.........................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................GTCGAGATCCGAGATCCGTC..................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
............................................................................................TAGAAAAACGGTGAAGGTCGCGCTGC........................................................................................................................................................................................................	26	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................CTTGATTCTCGACATCCCGC.....................................................	20	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................TCCGTCATTAAACCGGAC......	18	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................CCGCCAGTGAGACGAAAGAGT....................................	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................TCCCGCCAGTGAGACAAAAGAGTCGAGA...............................	28	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................CATGTGCGTTCGTGTGTGTGT.....................................................................................................................	21	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0
..........................................................................................GCTAGAAAAATGGTGAAGGT................................................................................................................................................................................................................	20	2	2	0.50	1	0	0	0	0	1	0	0	0	0	0
......................................................................................CAGAGCTAGAAAAATGGTGAAG..................................................................................................................................................................................................................	22	3	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GTGCGTTCGTGTGTGTGTGTGT.................................................................................................................	22	0	4	0.25	1	1	0	0	0	0	0	0	0	0	0
..........................................................................................GCTAGAAAAATGGTGAAGGTT...............................................................................................................................................................................................................	21	3	11	0.09	1	0	0	0	0	1	0	0	0	0	0

TCACTCGATGGTTTTTGGTTAATGGTGTCAAGGTTACGCGGGTTGCTTGCCATTCGCGGTAAGGTTCCTCTCGGGTATCGCTCGCTCTCTCTATCTTTTTGCCACTTCCAGCGCGACGCTTTCTCGCTCTATTAACTAAGCGTTCAACCACAACCACGTATAAGTACAAGATTAGCGTGGGTACACGCAAGCACACACACACACACGCTCGTCACAAATATGTCGTTCGTTGACTATATTAGCTAGAACTAAGAGCTGTAGGGCGGTCACTCTGTTTTCTCAGCTCTAGGCTCTAGGCAGTAATTTGGCCTGTTAGGT **********************************************************........(((..(((((..((.(((..((.(((....))).))..)))))..)))))..)))..............***********************************************************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M023 head	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	O001 Testis	O002 Head	SRR902008 ovaries	SRR553488 RT_0-2 hours eggs	GSM343915 embryo	SRR1275485 Male prepupae	SRR618934 dsim w501 ovaries	SRR902009 testis
.......................................................................CGGGTATCGCTCGCTCTCTCT..................................................................................................................................................................................................................................	21	0	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0
.............TTTGGTTGATGGTGTCAAGGT............................................................................................................................................................................................................................................................................................	21	1	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................CTAGGCTCTAGGCAGTAATTT............	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................CCACAACCACGTATAAGTACAAGATTA................................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................AGCACACACACACACACGCT.............................................................................................................	20	0	2	1.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0
................................................................................................................................................................................................................CCGTCACAAATATGTCGTTCGTT.......................................................................................	23	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................CGCTCTCTCTATCTTTTT..........................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0
.CACTCGATGGTTTTTGGTTAA........................................................................................................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................CAGCGCGACGCTTTCTCGC...............................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TGCTCTAGGCTCTAGGCAGTAA...............	22	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0
........................................................CGGTAAGGTTCCTCTCGGGTAT................................................................................................................................................................................................................................................	22	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................CCACGTATAAGTACAAGATTA................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
..............TTGGTTAATGGTGTCAAGGTTA..........................................................................................................................................................................................................................................................................................	22	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0
..............................................................................CGCTCGCTCTCTCTATCTTTT...........................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TCTAGGCAGTCATTTG...........	16	1	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0
...CTCGTTGGTATTTGGTTAAT.......................................................................................................................................................................................................................................................................................................	20	2	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................ACAGACGCTCGTAACAATTATGT...............................................................................................	23	3	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................ACCTCCAGCGCGACTCT......................................................................................................................................................................................................	17	2	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TAGGCTGTAGCCAGTAAGTT............	20	3	6	0.17	1	0	0	0	0	1	0	0	0	0	0	0	0	0
................GCTTAATGGTGTCAA...............................................................................................................................................................................................................................................................................................	15	1	6	0.17	1	0	0	0	0	1	0	0	0	0	0	0	0	0
..................TTAATGGTGACAAGGTGA..........................................................................................................................................................................................................................................................................................	18	2	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................TTTAGGCTCTAGGCAG..................	16	1	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................................GGTATCGCTGGCTCT......................................................................................................................................................................................................................................	15	1	9	0.11	1	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................CGCGTATCGCTCGATCTCC....................................................................................................................................................................................................................................	19	3	10	0.10	1	0	0	0	0	0	0	0	0	0	1	0	0	0
..............TTGGTTATTGGTGTGACGGT............................................................................................................................................................................................................................................................................................	20	3	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	2
......................................................................................................................................................CAACCACGTTTAAGT.........................................................................................................................................................	15	1	13	0.08	1	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................ACACGCTCGTCACAC.....................................................................................................	15	1	19	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................ATGAGCTAGAAGTAAGAGG..............................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0

Species	Coordinate	ID	Alignment
droSim2	x:5746908-5747225 +	dsi_20408	AGTGAGCTACC-----------A---AAA-ACCAATTACCACA--------------GTTCCAATGCGCCCAACGAACGGTAAGCGCCAT------------------------TC------CAAGGAGAGCCC---------------AT--A--------G----------CGAGCGAGA-GAGATAGAAAAACGGTGAAGGTCGCGC--TGC-------------------------------------------------------------G------------AAAGAGCGAGATAATTG---ATTCG---CAAGTT----------G----GTGTTGGTGCA------------TATTCATGTTCTAATCGCACCCATGTG-----------------------C----GTTC----GTGTGT----GTGTGTGT--GCGA--GCAGT----------GTTTAT-----A------------------CA--GCA--------AG-CAACTGATATAATCGATCTTG-ATTCT-------CGACATC-----CCGCCAGTGA-----------GACAAAA----------------GA-GTCGAGATCC---------GA-----------GATC-----------CGTCAT------TAAACCGGACAATCCA
droSec2	scaffold_4:655575-655892 -		AGTGGGCTACC-----------A---AAA-ACCAATTACCACA--------------GTTCAAATGCGCCCAACGAACGGTAAGCGCCAT------------------------TT------CAAGGAGAGCCC---------------AT--A--------G----------CGAGCGAGA-GAGATAGAAAAACGGTGAAGGTCGCGC--TGC-------------------------------------------------------------G------------AAAGAGCGAGATAATTG---ATTCG---CAAGTT----------G----GTGTTTGTGCA------------TATTCATGTTCTAATCGCACCCATGTG-----------------------C----GTTC----GTGTGT----GTGTGTGT--GCGA--GCAGT----------GTTTAT-----A------------------CA--GCA--------AG-CAACTGATATAATCGATCTTG-ATTCT-------CGACATC-----CCGCCAGTGA-----------GACAAAA----------------GA-ATCGAGATCC---------GA-----------GATC-----------CGTCAT------TAAACCGGACAATCCA
dm3	chrX:6114074-6114397 +		AGCGAGCTACC-----------A---AAAAACCAATTACCACA--------------GTTCCAATGCGCCCAACGAACGGTAAACGCCAT------------------------TC------CAAGGAGAGCCC---------------AT--A--------G---------GCGAGCGAGA-GAGATAGAAAAACGGTGAAGGTCGCGC--TGC-------------------------------------------------------------G------------AAAGAGCGAGATAATTG---ATTCG---CAGGTT----------G----GTGTTGGTGCA------------TATTCATGTTCTAATCGCCCTCATGTG-----------------------C----GTTC----GTGTGTGTACATATGTGT--GCGA--GCAGT----------GTTTAT-----A------------------CA--GCA--------AG-CAACTGATATAATCGATCTTG-ATTCT-------CGACATC-----CCGCCAGTGA-----------GACAAAA----------------GA-ATCGAGATCC---------GA-----------GATC-----------CGTCAT------TAAACCGGACAATCCA
droEre2	scaffold_4690:15084106-15084423 +		AGCGGGCTACC-----------T---AAAAACTAATTACCGCA--------------GTTCCAATGCGCCCAACGAACGGTAAACTTCAT------------------------TC------CAAGGAGAGCCC---------------AT--A--------G----------CGCGCGAGA-GAGATAGAAAAACGGTGAAGGTCGCGC--TGC-------------------------------------------------------------G------------AAAGATAGAGATAATTG---ATTCG---CAGGTTCG--------T----GTGTTGGTGCA------------TATTCATGTTCTAATAGCTCGCAT---------------------------------TT----GTGTGT----GTGTGTGT--GCGA--GTAGT----------GCTTAT-----A------------------CA--GCA--------AG-CAACTGATATAATCAATCTTG-AATCT-------CAACATC-----CCGCCAGTGA-----------GACAAAA----------AATCGAGA-ATCGCGATCT---------GA-----------GATC-----------CGTCAA------CAAACCGGACCAG---
droYak3	X:2118393-2118739 +		AGCGAGCTACC-----------C---AAAAACTAATTGTCGCA--------------GTTTCAATGCGCCCAACGAACGGTAAACGCCAT------------------------TC------CAAGGAGAGCCC---------------AT--A--------GCGTGAAAGAGAGAGAGAGT-GAGATAGAAAAACGGTGAAGGTCGCTC--TGC-------------------------------------------------------------A------------TAAGATAGAGATAATTG---ATTCG---CAGGTT----------G----GTGTTGGTGCT------------TATTCATGTTCTAATA-CCCTTATGTG-----------------------C----GTGT----GTGTGT----GTGTGTGT--GT--------------------TTTAT-----A------------------CA--GCAAGCCACCAAG-CAACTGATATAATCAATCTTG-ATTCT-------CGACATC-----CCGCCAGGGA-----------GACAAAA----------------CA-ATAGAGATCCGAAAGATCCGAAAGATCCGAGAGATC-----------CGTCAT------CAAACCGGACCAA-CA
droEug1	scf7180000409033:442208-442544 +		AGCGAGCTACC-----------A---AAA-A--AATATCCGCA--------------GTTCCAATGCGCCTAACAAACGGTAAGCAGCAT------------------------TC------CAAGGAGAGCCC---------------AT--A--------G----------------ACA-GAGATAGAAAAACGGTGAAGGTCGCGC--TGCGAA----------------CAGAAT------------GCGA-AGAGCGAGCGAAA------GAGGTATAGAG--AGAGAGCGAGATAATTG---ATTCG---CAGGTT----------G----GTGTTGGTGTA------------TATTCTTATTATATTAACCCGTAAGTG-----------------------A----GATA----GTATTT----ATGTGTGT--GT--------------------TTTAT--------------------------------------------ACTGATATAATCAATCTTA-ACTCTTGATTCTTGACCTCCCTTTCCGCCAGCGACACG------AAACAAAA-----C---ATATCGAGA--------TCC---------CC-----------GA-----------------AC------CAAACCGGATTAA---
droBia1	scf7180000302421:899256-899593 +		AGCGAGCTACC-----------A---AAAAAAGAATTGCCGCA--------------GTTCCAATGCGCCCAACGAACGGTAAACAGCAT------------------------TC------CAAGGAGACACC---------------AT--A--------G----------------AAA-GAGACAGA-AAACGGTGAAGGTCGCGCGGTGCGAA----------------CAGAAT------------GCGA-AGAGCGAGCGCAG------GCGAGAG--GGAGACAGAACGAGATAATTG---ATTCG---CAGGTT----------G----GTGTTGGTGCCG-----------TATTCCTATTCTACTCACCCGCTTG---------------------------------C----CTGTGT--------------GT-------GT----------GTTTAC-----T------------------CG--GCA--------CATAAACTGATATAATCAATCATG-ATTCT-------TGACTTC-----CCGCCAGCGACACGACACGAAAACAAAA-----C---AAATCGAGA-----------------------------------TC-----------CGTCTC------CAAACCGGATTAGCCA
droTak1	scf7180000414425:122854-123185 +		AGCGAGCTACC-----------A---AAA-AAAAATCGCCGCA--------------GTTCCAATGCGCCCAACGAACGGTAAACAGCAA------------------------TT------CAAGGAGAGCCC---------------AT--A--------G----------------AGA-GAGACAGAAAAACGGTGAAGGTCGCGC--GGCGAA----------------TGCTAT------------GCG-GT---AGAG--------------------GG--AGAGAGAGAGATAATTG---ATTCG---CAGGTT----------G----GTGTTGGTGTAC-----------TGTTCTTATTCGATTTACCCGCTTGGG-----------------------T----GTGT----GTACAT----ATGTGTGT--GC-------GT----------GTTTAC-----T------------------CA--GCA-------TTA-TAACT-ATATAATCAATCATG-ATTCT-------TGACTTC-----CCGCCAGCGAAACGAGGCAGAAACAAAA-----C---AAATCGAGA-----------------------------------TC-----------CGTCAC------CAAACCGGATTAACCA
droEle1	scf7180000490141:838807-839139 +		AGCGGGCTACC-----------A---AAT-AATAATAGCAGCA--------------GTTCCAATGCGCCCAACCTACGGTAAAAAGCAT------------------------TC------GAAGGAGAGCAC---------------CT--A--------G----------------AAA-GAGATAGAAAAACGGTGAAGGTCGC----TG--------------------CAGAAT------------GAG-AA---AGAGCGAA--------------------AGAGAGGGAGATAATTG---ATTCG---CAGGTTAGTTGTTTTTGGTGTGTGTTGGTGAA------------TA------TTCTATTAACCCCTATGTGCTTGTGTTGACATTCTGTTAACC-------------CTG--------TGTGTTT--GC-------GT----------GTTTAT-----T------------------CA--GCC--------AG-CAACTGATATAATCAATCTTTGATTACTACT----TAAGTC-----TTGACGGCGA-----------AGCAAAA-----C---AAATCGAGA--------TCC--------------------------------------G------------AACCGGATTAA---
droRho1	scf7180000779986:901748-902083 -		TGCGAGCTACC-----------G---AAG-AATAAAAGCCGCA--------------GTTCAAATGCGCCCAACGTACGGTAAATACCAT------------------------TT------CAAGGAGAGCAC---------------CT--A--------G----------------AAA-GACATAAAAAAACAGTGAAGGTCGC----TG--------------------CAGAAT------------GAG-AA---AGAGCGGA--------------------ACAGAGAGAGATTATTA---ATTAG---CAGGTTAGTT------G----TTTTTGGTGAA------------CATT---GTATTA---ACCCATATGCACTTGTGTGGACATTCTGTTAACCC----GTAC----GTG--------TGGGCTT--GC-------GT----------GCTTAT-----T------------------TA--ACT--------AA-CAACTGATATAATCAATCTTG-ATTACTACATATGTATATC-----TTGACAGTGA-----------AACAAAA-----C---CAATCGAGA-----------------------------------TC-----------CGCCAA------CAAACCGGATTA----
droFic1	scf7180000454072:1257207-1257518 -		AGTGGGCTACC-----------A---AAA-AAAAATCGTCGCA--------------GTTCCAATGCGCCCAACGAGCAGTTAACAGCAT------------------------TC------CAAGGAGAACCT---------------CT--A-----A--G----------------AAA-GAGATAGAAAAACGGTGAAGGTCGCGC--TGCGAA----------------CAGAAT------------GCGG-AGAGCGAGCG----------------------AAAGAGAGAGATAATTG---ATTTG---CAGGTTCGTTAA---TG----GTGTTAG------------------TTCATATTCTATCAACC-CCGTGTG-----------------------C------------------------GTGTTT--GC-------GT----------GCTTAT-----G------------------AA--CCC--------AA-CAACTGATATAGTCAATCTTG-GTTCTTAATTCTTTGCATC-----CCGGCAGCAA----------------AAA----A---AGATCGAGA-----------------------------------TC-----------CGCTAG------CAAACCGGATTAA---
droKik1	scf7180000299277:73345-73740 +		AGGGGGCTACCTGGCGCCCGTTCGCCAA---AAACTCCCCGCA--------------GTTCCAATGCGCCCAACGAGCGGTAAGCAGCAGCAGCAGCAGCAGTAGCAGCGGCGGTC------CAAGGCAA-----------CAAGAACAATAGA-------------------------AGA-AAGAGAGA-----AGAGAAGGTCGCCC--A---------CAACCCAATGTGGCGAAT------------GCGG-AG--AGAGCGAAC---TTCG------------AGAGAGCCAGCTAATTG---ATTCC---CAGGTT----------G----GTGTGCGGGTG------------TATGC----------------------------------------------------CA----GTGTGT----GTGTGTGCTTGT-------GT--------GTTATTAAACATACATATAAATTGCATTTACATAGAGGCAGC-----CA-CTACTGATATAATCGATCTTG-AA------------------------------------------------AAGAACACACAAGAGCGTGCACGTTAGATCC---------GC--GATCGGAGTCGTCGTCGTCGTCGTCGTCGTTGCCTTAGAACCGGAT------
droAna3	scaffold_13417:717056-717358 +		TGAGGCTCACCTCGCACAAC--A---CCT-AACCACAACAGCAGTTATAAATGCTGAAGCAGAAAGAGAACCACTA----------------GCAGCAGCAGCAGCAGCCGATGTCGAA-ACCAAGGAGACTTC--AA---CAAAAA---CAACAAAC-------------------------ATTATAAGAAGGCTGTGAAGGTCGC----CGC----CAAAGAACAAATGT-------GTTGGAGAGAATT-----------------------A------------AGAGAGCGAGCTAATTA---AATAGCAGCAGGTT----------A----GTTCTG----------------------------------------TGTG-----------------------T----GTGT----GTGTGT----GTGTGGGT--GGGA--GC-GTGCTTTGAGGTCTC-A-ATA--------------ATTTACATA--GTC---------A-CAACTGATATAATCAATCTTG---------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396362:429523-429849 -		TGAGGCTTACC-----------T---CGC-ATACCCAACCGCAGTTATAAATGCTCCGGCACCAAAAAAAGCATTA----------------GCCACA------------AATGTCGCAGACCAAGGAGACCGATTAACAACAAGAACAACAACAAACACTAA----------------AG--ACTATAAGAAGGCTGTGAAGGTCGCGC--CAC----CAAAGAACAAATGT-------ATTGGAGAGCATTAG-AA---GGAGAGCTGAGAACAG------------GGAGAGCGAGTTAATTA---AATCG---CAGGTT----------A----GTTTTTTTC---------------AT-TGTATTATAAG-------GTGTG-----------------------T----G--T----TTGTGT----GTGTGGAT--GGGG-AGC-GTGC---------TTTAAACA--------------ATTTACATA--GCC-------ACA-CAACTGATATAATCAATCTTG---------------------------------------------------------------------------------------------------------------------------------------------------
dp5	XL_group1e:10279002-10279392 +		TGGGCGCCCCTTTTCCCCTATCT---ATAAGCTA-TAAC------------TTATTAGTTCAAATGTGTTCTGCCAGCAGTCGC---------------------------------------GAACAGCAGCC---------------AT--A--------G----------TCAGCAGCAACAGA-AGCAGAATTGTGAAGGTCGCGC--GCCAGTTCCAAGAACATTTTT-------GTTTGT------GTGT-GGCGCGAGAGTAA------G------------TGGGAGCGCCTCAATTGTTATTAAC---CAGGTG----------G----GTCTCCGTCTCCCACCATGAGTGCATGAGTGTCTTAATG-------CCTG-----------------------T----GTTCATGTGTGTGT----GTGTGTGT--CGGAGAGC-TTGTTTGCATGTTAT-A-ATA-------------TATTTACATA--CCC--------AC-CAACTGATATAATCAATCTTA-AAGTTC------CTACATT-----CAG-AACTGA------------ACGCAC----------------GA-AACCTCGTCC---------AA-----------AATC-----------TGTTC--------CAAGCGAATAGCAAC
droVir3	scaffold_12928:882113-882168 +		TGTGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------GT----GTGTGT----GTGTGTGT--GTGT--GTATT----------GCTTGA-----A------------------------A--------AT-GAATTGATTTATTC----------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6328:1853027-1853098 +		CACAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGTG-----------------------C----GTTA----GTGTGT----GCGTGTGT--GT-------GT----------CTTTCT-----A------------------GA--TCA--------AG-CC--------------GTTTT-ATCAG-------CGACATG-----CCGCCA--------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_14853:7657506-7657547 -		TCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----TTGTG-----------------------TGTGTGTGT----GTGTGT----GTGTGTGT--GTGA--AAAAT----------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AGTGAGCTACC-----------A---AAA-ACCAATTACCACA--------------GTTCCAATGCGCCCAACGAACGGTAAGCGCCAT------------------------TC------CAAGGAGAGCCC---------------AT--A--------G----------CGAGCGAGA-GAGATAGAAAAACGGTGAAGGTCGCGC--TGC-------------------------------------------------------------G------------AAAGAGCGAGATAATTG---ATTCG---CAAGTT----------G----GTGTTGGTGCA------------TATTCATGTTCTAATCGCACCCATGTG-----------------------C----GTTC----GTGTGT----GTGTGTGT--GCGA--GCAGT----------GTTTAT-----A------------------CA--GCA--------AG-CAACTGATATAATCGATCTTG-ATTCT-------CGACATC-----CCGCCAGTGA-----------GACAAAA----------------GA-GTCGAGATCC---------GA-----------GATC-----------CGTCAT------TAAACCGGACAATCCA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGATCC---------GA-----------GATC-----------CG..........................	18	1	3.00	3	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTG-ATTCT-------CGACATC-----CCGCCAGTGA-----------A....................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAA----------------GA-GTCGAGATCC---------GG-----------...........................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA----------------GA-GTCGAGATCC---------GA-----------GATC-----------............................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGATCTTG-ATTCT-------CGAC..................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................A---AAA-ACCAATTACCACA--------------GT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................GCGCCCAACGAACGGTAAGCGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................ATGTG-----------------------C----GTTC----GTGTGT----GTGTGT.................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------GA-GTCGAGATCC---------GA-----------GATC-----------CG..........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................ATAGAAAAACGGTGAAGGTCGCGC--TGC-------------------------------------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................GATAGAAAAACGGTGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................GCCCAACGAACGGTAAGCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATATAATCGATCTTG-ATTCT-------CGACA.................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGTGA-----------GACAAAA----------------GA-GT.........................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCC---------GA-----------GATC-----------CGTCAT------TAAACCGGA.......	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGATCC---------GA-----------GATC-----------CGT.........................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................AGCCC---------------AT--A--------G----------CGAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAA----------------GA-GTCGAGATCC---------GA-----------G..........................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................AACGGTGAAGGTCGCGC--TGC-------------------------------------------------------------G------------AAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGTGA-----------GACAAAA----------------GA-G..........................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-ATTCT-------CGACATC-----CCGCCAGTGA-----------G....................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................AGAAAAACGGTGAAGGTCGCGC--TG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CATGTTCTAATCGCACCC..........................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGATCC---------GA-----------GATC-----------CGTC........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................TAGAAAAACGGTGAAGGTCGCGC--TGC-------------------------------------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTG-ATTCT-------CGACATC-----CCGC......................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-----------CGTCAT------TAAACCGGAC......	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-----CCGCCAGTGA-----------GACAAAA----------------GA-GTCGAGA....................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CATGTG-----------------------C----GTTC----GTGTGT----GTGT...................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................GTG-----------------------C----GTTC----GTGTGT----GTGTGTGT--.............................................................................................................................................................................................................................................	22	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

AGTGGGCTACC-----------A---AAA-ACCAATTACCACA--------------GTTCAAATGCGCCCAACGAACGGTAAGCGCCAT------------------------TT------CAAGGAGAGCCC---------------AT--A--------G----------CGAGCGAGA-GAGATAGAAAAACGGTGAAGGTCGCGC--TGC-------------------------------------------------------------G------------AAAGAGCGAGATAATTG---ATTCG---CAAGTT----------G----GTGTTTGTGCA------------TATTCATGTTCTAATCGCACCCATGTG-----------------------C----GTTC----GTGTGT----GTGTGTGT--GCGA--GCAGT----------GTTTAT-----A------------------CA--GCA--------AG-CAACTGATATAATCGATCTTG-ATTCT-------CGACATC-----CCGCCAGTGA-----------GACAAAA----------------GA-ATCGAGATCC---------GA-----------GATC-----------CGTCAT------TAAACCGGACAATCCA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..........................................................................................................................................................................................................................................................................................................GATAATTG---ATTCG---CAAGTT----------G----GT.....................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATATAATCGATCTTG-A.................................................................................................................................................	19	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGATATAATCGATCTTG-ATTCT-------CGAC..................................................................................................................................	29	1	1.00	1	0	1	0	0
.......................................................................................CAT------------------------TT------CAAGGAGAGCCC---------------AT--A--------G----------CGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0
..............................ACCAATTACCACA--------------GTTCAAATGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0
..................................................................................................................................GCCC---------------AT--A--------G----------CGAGCGAGA-G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................AATCGCACCCATGTG-----------------------C----GTTC----GTGTGT----GT.....................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------GA-ATCGAGATCC---------GA-----------GATC-----------CGTCAT------T...............	26	1	1.00	1	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAA----------------GA-ATCGAGATCC---------GA-----------GATC-----------CGTC........................	27	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................GATAGAAAAACGGTGAAGGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-ATCGAGATCC---------GA-----------GATC-----------CGTT........................	22	1	1.00	1	0	1	0	0
................................................................................................................................GAGCCC---------------AT--A--------G----------CGAGCGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.............................................................................................................................................................................CGAGCGAGA-GAGATAGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0
................................................................................................................................................................................................................GC--TGC-------------------------------------------------------------G------------AAAGAGCGAGATAATTG---ATT.................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................GTTC----GTGTGT----GTGTGTGT--GCGA--GC.....................................................................................................................................................................................................................................	24	2	1.00	2	0	1	1	0
.......................................................................................................................................................................................................GAAGGTCGCGC--TGC-------------------------------------------------------------G------------AAAGAGC.................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................GTTC----GTGTGT----GTGTGTGT--GCGA--.......................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................................TGTG-----------------------C----GTTC----GTGTGT----GTGT...................................................................................................................................................................................................................................................	19	3	0.33	1	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................GTG-----------------------C----GTTC----GTGTGT----GTGT...................................................................................................................................................................................................................................................	18	6	0.17	1	0	0	1	0

dm3

AGCGAGCTACC-----------A---AAAAACCAATTACCACA--------------GTTCCAATGCGCCCAACGAACGGTAAACGCCAT------------------------TC------CAAGGAGAGCCC---------------AT--A--------G---------GCGAGCGAGA-GAGATAGAAAAACGGTGAAGGTCGCGC--TGC-------------------------------------------------------------G------------AAAGAGCGAGATAATTG---ATTCG---CAGGTT----------G----GTGTTGGTGCA------------TATTCATGTTCTAATCGCCCTCATGTG-----------------------C----GTTC----GTGTGTGTACATATGTGT--GCGA--GCAGT----------GTTTAT-----A------------------CA--GCA--------AG-CAACTGATATAATCGATCTTG-ATTCT-------CGACATC-----CCGCCAGTGA-----------GACAAAA----------------GA-ATCGAGATCC---------GA-----------GATC-----------CGTCAT------TAAACCGGACAATCCA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................................................................GCCC---------------AT--A--------G---------GCGAGCGAGA-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	18.00	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................TTCG---CAGGTT----------G----GTGTTGGTGC.............................................................................................................................................................................................................................................................................................................................................	21	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................................................................................................................................................................................GAGA-GAGATAGAAAAACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTGT--GCGA--GCAGT----------GTTTAT-----.............................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGTGT--GCGA--GCAGT----------........................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTGT--GCGA--GCAGT----------GTTTAT-----.............................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................ATTG---ATTCG---CAGGTT----------G----GTGTTGGTGCA------------T...............................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................GGTCGCGC--TGC-------------------------------------------------------------G------------AAAGAGCG................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..........................................................................................................................................................................................ATAGAAAAACGGTGAAGGTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................ATTCG---CAGGTT----------G----GTGTTGGTGT.............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATATAATCGATCTTG-ATTCT-------C.....................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................CGCCCAACGAACGGTAAACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AGCGGGCTACC-----------T---AAAAACTAATTACCGCA--------------GTTCCAATGCGCCCAACGAACGGTAAACTTCAT------------------------TC------CAAGGAGAGCCC---------------AT--A--------G----------CGCGCGAGA-GAGATAGAAAAACGGTGAAGGTCGCGC--TGC-------------------------------------------------------------G------------AAAGATAGAGATAATTG---ATTCG---CAGGTTCG--------T----GTGTTGGTGCA------------TATTCATGTTCTAATAGCTCGCAT---------------------------------TT----GTGTGT----GTGTGTGT--GCGA--GTAGT----------GCTTAT-----A------------------CA--GCA--------AG-CAACTGATATAATCAATCTTG-AATCT-------CAACATC-----CCGCCAGTGA-----------GACAAAA----------AATCGAGA-ATCGCGATCT---------GA-----------GATC-----------CGTCAA------CAAACCGGACCAG---	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................................................................................................................................................................................ACGGTGAAGGTCGCGC--TGC-------------------------------------------------------------G------------AAAGAGC.................................................................................................................................................................................................................................................................................................................................................................................................	27	1	9.00	9	0	0	0	0	0	0	9
.................................................................................................................................................................................................................................................................................................................G---ATTCG---CAGGTTCG--------T----GTGTTGGT...............................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	1	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-----------GACAAAA----------AATCGAGA-ATCGC......................................................................	22	1	1.00	1	0	0	0	0	0	1	0
.GCGGGCTACC-----------T---AAAAACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
...............................................................................GTAAACTTCAT------------------------TC------CAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................TCG--------T----GTGTTGGTGCA------------TATTCATGTT......................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................ATTCG---CAGGTTCG--------T----GTGTTGGT...............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................AACGGTGAAGGTCGCGC--TGC-------------------------------------------------------------G------------AA......................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCGATCT---------GA-----------GATC-----------CGTCAA------CAAACCG.........	29	1	1.00	1	0	0	0	0	1	0	0
..................................................................CGCCCAACGAACGGTAAACTTCAT------------------------TC------CA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................ATTG---ATTCG---CAGGTTCG--------T----GT.....................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGT--GCGA--GTAGT----------GCTTAT-----A------------------..........................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGT--GCGA--GTAGT----------GCTTAT-----A------------------C.........................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................GATAGAAAAACGGTGAAGGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................AGCTCGCAT---------------------------------TT----GTGTGT----GTGTGTGT--GC...........................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................AT---------------------------------TT----GTGTGT----GTGTGTGT--GCGA--.......................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
..................................................................CGCCCAACGAACGGTAAACTTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................GATAGAAAAACGGTGAAGGTCGCGC--TG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................AATTG---ATTCG---CAGGTTCG--------T----GTGTTGGT...............................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGT--GCGA--GTAGT----------GC......................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT-------CAACATC-----CCGCCAGTG.................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................................................CCC---------------AT--A--------G----------CGCGCGAGA-GAGATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................GATAATTG---ATTCG---CAGGTTCG--------T----GTGTT..................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................GCAT---------------------------------TT----GTGTGT----GTGTGTGT--GC...........................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................AT---------------------------------TT----GTGTGT----GTGTGTGT--GC...........................................................................................................................................................................................................................................	20	4	0.25	1	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------TT----GTGTGT----GTGTGTGT--G............................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	1	0	0

droYak3

AGCGAGCTACC-----------C---AAAAACTAATTGTCGCA--------------GTTTCAATGCGCCCAACGAACGGTAAACGCCAT------------------------TC------CAAGGAGAGCCC---------------AT--A--------GCGTGAAAGAGAGAGAGAGT-GAGATAGAAAAACGGTGAAGGTCGCTC--TGC-------------------------------------------------------------A------------TAAGATAGAGATAATTG---ATTCG---CAGGTT----------G----GTGTTGGTGCT------------TATTCATGTTCTAATA-CCCTTATGTG-----------------------C----GTGT----GTGTGT----GTGTGTGT--GT--------------------TTTAT-----A------------------CA--GCAAGCCACCAAG-CAACTGATATAATCAATCTTG-ATTCT-------CGACATC-----CCGCCAGGGA-----------GACAAAA----------------CA-ATAGAGATCCGAAAGATCCGAAAGATCCGAGAGATC-----------CGTCAT------CAAACCGGACCAA-CA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................GAGCCC---------------AT--A--------GCGTGAAAGAGAGAGAGAGT-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	7.00	7	0	0	0	0	0	0	0	0	0	0	7
......................................................................................................................................................................................................................................................................................................TAGAGATAATTG---ATTCG---CAGGGA----------............................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGAAAGATCCGAGAGAT........................................	20	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
............................................................................ACGGTAAACGCCAT------------------------TC------CAAGGAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................GATAATTG---ATTCG---CAGGTT----------G----GTGTTG.................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...............................................................................GTAAACGCCAT------------------------TC------CAAGGAGAGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCGAAAGATCCGAGAGATC-----------CGTCAT------C...............	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-ATAGAGATCCGAAAGAT..........................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................AAAACGGTGAAGGTCGCTC--.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................AGAAAAACGGTGAAGGTCGCTC--T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................AAAAACGGTGAAGGTCGCTC--TG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--GT--------------------TTTAT-----A------------------CA--GCAAGCCAC.............................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................A--------GCGTGAAAGAGAGAGAGAGT-GAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................CC---------------AT--A--------GCGTGAAAGAGAGAGAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................ATAGAGATAATTG---ATTCG---CAGGGA----------............................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................GTTTCAATGCGCCCAACGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................AGAGCCC---------------AT--A--------GCGTGAAAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................AACGGTGAAGGTCGCTC--TGC-------------------------------------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TAATTG---ATTCG---CAGGTT----------G----GTGTTGGT...............................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA----------------CA-ATAGAGATCCGAAA.............................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAA----------------CA-ATAGAGATCCGAAA.............................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................ATTCG---CAGGTT----------G----GTGTTGGT...............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................ATTCG---CAGGTT----------G----GTGTTGGTGCT------------T...............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................AATTG---ATTCG---CAGGTT----------G----GT.....................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGAAAGATCCGAGAGATC-----------CGTCAT------................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................AAACGGTGAAGGTCGCTC--TGC-------------------------------------------------------------A------------TA......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................AGAGATAATTG---ATTCG---CAGGGA----------............................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCGAAAGATCCGAGAGATC-----------CGTCAT------................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------GACAAAA----------------CA-ATAGAGATC..................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................AGATAATTG---ATTCG---CAGGTT----------G----GT.....................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--------------------TTTAT-----A------------------CA--GCAAGCCACCAAG-CAACT...................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................AT------------------------TC------CAAGGAGAGCCC---------------AT--A--------GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.................................................................................AAACGCCAT------------------------TC------CAAGGAGAGCCC---------------AT--................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................AGATAATTG---ATTCG---CAGGGA----------............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................GATAGAAAAACGGTGAAGGTCGCTC--TG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................AACGCCAT------------------------TC------CAAGGAGAGCCC---------------AT--A--------GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAA----------------CA-ATAGAGATCCGAAAGAT..........................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGAAAGATCCGAGAGAT........................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGT----GTGTGT----GTGTGTGT--GT--------------------TTT....................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................GT----GTGTGT----GTGTGTGT--GT--------------------TT.....................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

AGCGAGCTACC-----------A---AAA-A--AATATCCGCA--------------GTTCCAATGCGCCTAACAAACGGTAAGCAGCAT------------------------TC------CAAGGAGAGCCC---------------AT--A--------G----------------ACA-GAGATAGAAAAACGGTGAAGGTCGCGC--TGCGAA----------------CAGAAT------------GCGA-AGAGCGAGCGAAA------GAGGTATAGAG--AGAGAGCGAGATAATTG---ATTCG---CAGGTT----------G----GTGTTGGTGTA------------TATTCTTATTATATTAACCCGTAAGTG-----------------------A----GATA----GTATTT----ATGTGTGT--GT--------------------TTTAT--------------------------------------------ACTGATATAATCAATCTTA-ACTCTTGATTCTTGACCTCCCTTTCCGCCAGCGACACG------AAACAAAA-----C---ATATCGAGA--------TCC---------CC-----------GA-----------------AC------CAAACCGGATTAA---	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGCGAGCTACC-----------A---AAAAAAGAATTGCCGCA--------------GTTCCAATGCGCCCAACGAACGGTAAACAGCAT------------------------TC------CAAGGAGACACC---------------AT--A--------G----------------AAA-GAGACAGA-AAACGGTGAAGGTCGCGCGGTGCGAA----------------CAGAAT------------GCGA-AGAGCGAGCGCAG------GCGAGAG--GGAGACAGAACGAGATAATTG---ATTCG---CAGGTT----------G----GTGTTGGTGCCG-----------TATTCCTATTCTACTCACCCGCTTG---------------------------------C----CTGTGT--------------GT-------GT----------GTTTAC-----T------------------CG--GCA--------CATAAACTGATATAATCAATCATG-ATTCT-------TGACTTC-----CCGCCAGCGACACGACACGAAAACAAAA-----C---AAATCGAGA-----------------------------------TC-----------CGTCTC------CAAACCGGATTAGCCA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGCGAGCTACC-----------A---AAA-AAAAATCGCCGCA--------------GTTCCAATGCGCCCAACGAACGGTAAACAGCAA------------------------TT------CAAGGAGAGCCC---------------AT--A--------G----------------AGA-GAGACAGAAAAACGGTGAAGGTCGCGC--GGCGAA----------------TGCTAT------------GCG-GT---AGAG--------------------GG--AGAGAGAGAGATAATTG---ATTCG---CAGGTT----------G----GTGTTGGTGTAC-----------TGTTCTTATTCGATTTACCCGCTTGGG-----------------------T----GTGT----GTACAT----ATGTGTGT--GC-------GT----------GTTTAC-----T------------------CA--GCA-------TTA-TAACT-ATATAATCAATCATG-ATTCT-------TGACTTC-----CCGCCAGCGAAACGAGGCAGAAACAAAA-----C---AAATCGAGA-----------------------------------TC-----------CGTCAC------CAAACCGGATTAACCA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGCGGGCTACC-----------A---AAT-AATAATAGCAGCA--------------GTTCCAATGCGCCCAACCTACGGTAAAAAGCAT------------------------TC------GAAGGAGAGCAC---------------CT--A--------G----------------AAA-GAGATAGAAAAACGGTGAAGGTCGC----TG--------------------CAGAAT------------GAG-AA---AGAGCGAA--------------------AGAGAGGGAGATAATTG---ATTCG---CAGGTTAGTTGTTTTTGGTGTGTGTTGGTGAA------------TA------TTCTATTAACCCCTATGTGCTTGTGTTGACATTCTGTTAACC-------------CTG--------TGTGTTT--GC-------GT----------GTTTAT-----T------------------CA--GCC--------AG-CAACTGATATAATCAATCTTTGATTACTACT----TAAGTC-----TTGACGGCGA-----------AGCAAAA-----C---AAATCGAGA--------TCC--------------------------------------G------------AACCGGATTAA---	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGCGAGCTACC-----------G---AAG-AATAAAAGCCGCA--------------GTTCAAATGCGCCCAACGTACGGTAAATACCAT------------------------TT------CAAGGAGAGCAC---------------CT--A--------G----------------AAA-GACATAAAAAAACAGTGAAGGTCGC----TG--------------------CAGAAT------------GAG-AA---AGAGCGGA--------------------ACAGAGAGAGATTATTA---ATTAG---CAGGTTAGTT------G----TTTTTGGTGAA------------CATT---GTATTA---ACCCATATGCACTTGTGTGGACATTCTGTTAACCC----GTAC----GTG--------TGGGCTT--GC-------GT----------GCTTAT-----T------------------TA--ACT--------AA-CAACTGATATAATCAATCTTG-ATTACTACATATGTATATC-----TTGACAGTGA-----------AACAAAA-----C---CAATCGAGA-----------------------------------TC-----------CGCCAA------CAAACCGGATTA----	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGTGGGCTACC-----------A---AAA-AAAAATCGTCGCA--------------GTTCCAATGCGCCCAACGAGCAGTTAACAGCAT------------------------TC------CAAGGAGAACCT---------------CT--A-----A--G----------------AAA-GAGATAGAAAAACGGTGAAGGTCGCGC--TGCGAA----------------CAGAAT------------GCGG-AGAGCGAGCG----------------------AAAGAGAGAGATAATTG---ATTTG---CAGGTTCGTTAA---TG----GTGTTAG------------------TTCATATTCTATCAACC-CCGTGTG-----------------------C------------------------GTGTTT--GC-------GT----------GCTTAT-----G------------------AA--CCC--------AA-CAACTGATATAGTCAATCTTG-GTTCTTAATTCTTTGCATC-----CCGGCAGCAA----------------AAA----A---AGATCGAGA-----------------------------------TC-----------CGCTAG------CAAACCGGATTAA---	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGGGGGCTACCTGGCGCCCGTTCGCCAA---AAACTCCCCGCA--------------GTTCCAATGCGCCCAACGAGCGGTAAGCAGCAGCAGCAGCAGCAGTAGCAGCGGCGGTC------CAAGGCAA-----------CAAGAACAATAGA-------------------------AGA-AAGAGAGA-----AGAGAAGGTCGCCC--A---------CAACCCAATGTGGCGAAT------------GCGG-AG--AGAGCGAAC---TTCG------------AGAGAGCCAGCTAATTG---ATTCC---CAGGTT----------G----GTGTGCGGGTG------------TATGC----------------------------------------------------CA----GTGTGT----GTGTGTGCTTGT-------GT--------GTTATTAAACATACATATAAATTGCATTTACATAGAGGCAGC-----CA-CTACTGATATAATCGATCTTG-AA------------------------------------------------AAGAACACACAAGAGCGTGCACGTTAGATCC---------GC--GATCGGAGTCGTCGTCGTCGTCGTCGTCGTTGCCTTAGAACCGGAT------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TGAGGCTCACCTCGCACAAC--A---CCT-AACCACAACAGCAGTTATAAATGCTGAAGCAGAAAGAGAACCACTA----------------GCAGCAGCAGCAGCAGCCGATGTCGAA-ACCAAGGAGACTTC--AA---CAAAAA---CAACAAAC-------------------------ATTATAAGAAGGCTGTGAAGGTCGC----CGC----CAAAGAACAAATGT-------GTTGGAGAGAATT-----------------------A------------AGAGAGCGAGCTAATTA---AATAGCAGCAGGTT----------A----GTTCTG----------------------------------------TGTG-----------------------T----GTGT----GTGTGT----GTGTGGGT--GGGA--GC-GTGCTTTGAGGTCTC-A-ATA--------------ATTTACATA--GTC---------A-CAACTGATATAATCAATCTTG---------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................................................................TATAAGAAGGCTGTGAAGGTCGC----CG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................GTGAAGGTCGC----CGC----CAAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.......................................................GAAGCAGAAAGAGAACCACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
..................................................................................................GCAGCAGCAGCCGATGTCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...............................................................AAGAGAACCACTA----------------GCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................CCAAGGAGACTTC--AA---CAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................TGT-------GTTGGAGAGAATT-----------------------A------------AGAG....................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................GAACAAATGT-------GTTGGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
................................................AAATGCTGAAGCAGAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................AA-ACCAAGGAGACTTC--AA---C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................GAACAAATGT-------GTTGGAGAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
...........................................................................................................GCCGATGTCGAA-ACCAAGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..................................................................................................................TCGAA-ACCAAGGAGACTTC--AA---C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.........................................................................................................CAGCCGATGTCGAA-ACCAAGGAGACTTC--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................TATAAGAAGGCTGTGAAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..........................................................................................................AGCCGATGTCGAA-ACCAAGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.................................................................................................................GTCGAA-ACCAAGGAGACTTC--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGT----GTGTGGGT--GGGA--GC-GTGC................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
................................................................AGAGAACCACTA----------------GCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.......................................................................CACTA----------------GCAGCAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	5	0.20	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGT----GTGTGGGT--GGG..........................................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................TCTG----------------------------------------TGTG-----------------------T----GTGT----GTGTGT----GTGTG..................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................GTGT----GTGTGT----GTGTGGGT--GG...........................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1

droBip1

TGAGGCTTACC-----------T---CGC-ATACCCAACCGCAGTTATAAATGCTCCGGCACCAAAAAAAGCATTA----------------GCCACA------------AATGTCGCAGACCAAGGAGACCGATTAACAACAAGAACAACAACAAACACTAA----------------AG--ACTATAAGAAGGCTGTGAAGGTCGCGC--CAC----CAAAGAACAAATGT-------ATTGGAGAGCATTAG-AA---GGAGAGCTGAGAACAG------------GGAGAGCGAGTTAATTA---AATCG---CAGGTT----------A----GTTTTTTTC---------------AT-TGTATTATAAG-------GTGTG-----------------------T----G--T----TTGTGT----GTGTGGAT--GGGG-AGC-GTGC---------TTTAAACA--------------ATTTACATA--GCC-------ACA-CAACTGATATAATCAATCTTG---------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

TGGGCGCCCCTTTTCCCCTATCT---ATAAGCTA-TAAC------------TTATTAGTTCAAATGTGTTCTGCCAGCAGTCGC---------------------------------------GAACAGCAGCC---------------AT--A--------G----------TCAGCAGCAACAGA-AGCAGAATTGTGAAGGTCGCGC--GCCAGTTCCAAGAACATTTTT-------GTTTGT------GTGT-GGCGCGAGAGTAA------G------------TGGGAGCGCCTCAATTGTTATTAAC---CAGGTG----------G----GTCTCCGTCTCCCACCATGAGTGCATGAGTGTCTTAATG-------CCTG-----------------------T----GTTCATGTGTGTGT----GTGTGTGT--CGGAGAGC-TTGTTTGCATGTTAT-A-ATA-------------TATTTACATA--CCC--------AC-CAACTGATATAATCAATCTTA-AAGTTC------CTACATT-----CAG-AACTGA------------ACGCAC----------------GA-AACCTCGTCC---------AA-----------AATC-----------TGTTC--------CAAGCGAATAGCAAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................................................................................................................................T-------GTTTGT------GTGT-GGCGCGAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	3	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------ACGCAC----------------GA-AACCTCGTCC---------A.......................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................GT-GGCGCGAGAGTAA------G------------TGGGA...................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................A-AGCAGAATTGTGAAGGTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CAGAATTGTGAAGGTCGCGC--G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATT-----CAG-AACTGA------------ACGCAC----------------GA-...........................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................CATGAGTGCATGAGTGTCTT....................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................AGAATTGTGAAGGTCGCGC--GC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................CGCGAGAGTAA------G------------TGGGAGCGC...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................GCGAGAGTAA------G------------TGGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................GGTCGCGC--GCCAGTTCCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TTGTGAAGGTCGCGC--GCCAGTTCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC----------------GA-AACCTCGTCC---------AA-----------AATC-----------C...........................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................TTGTGAAGGTCGCGC--GCCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TGTGAAGGTCGCGC--GCCAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................TTT-------GTTTGT------GTGT-GGCGCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT-----CAG-AACTGA------------ACGCAC----------------GA-...........................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................AGCAGTCGC---------------------------------------GAACAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................AGCAGAATTGTGAAGGTCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................AGCAGAATTGTGAAGGTCGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TGT-GGCGCGAGAGTAA------G------------TGGG....................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................CGAGAGTAA------G------------TGGGAGCGCCTT............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................CGTCTCCCACCATGAGTGCA..............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................CAAATGTGTTCTGCCAGCAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TTTT-------GTTTGT------GTGT-GGCGCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT--CGGAGAGC-TTGTTTGCAT..........................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................ATTTTT-------GTTTGT------GTGT-GGCGCGAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTC------CTACATT-----CAG-AACTGA------------ACGCAC----------------..............................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................AATTGTTATTAAC---CAGGTG----------G----.......................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAC----------------GA-AACCTCGTCC---------AA-----------AAT........................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................TG----------G----GTCTCCGTCTCCCACCAT.....................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAC----------------GA-AACCTCGTCC---------AA-----------AATC-----------T...........................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................TGAAGGTCGCGC--GCCAGTTCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................CAGA-AGCAGAATTGTGAAGGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................TGTGTTCTGCCAGCAGTCGC---------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC------CTACATT-----CAG-AACTGA------------ACGCAC----------------GA-...........................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................AATTGTTATTAAC---CAGGTG----------G----G......................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------CTACATT-----CAG-AACTGA------------ACGC................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA------------ACGCAC----------------GA-AACCTCGTCC---------AA-----------AATC-----------T...........................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................GCGAGAGTAA------G------------TGGGAGCGCC..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.....................................................ATTAGTTCAAATGTGTTCTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------ACGCAC----------------GA-AACCTCGTCC---------AA-----------AATC-----------T...........................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCAC----------------GA-AACCTCGTCC---------AA-----------...........................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................TTGT------GTGT-GGCGCGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................GT----GTGTGTGT--CGGAGAGC-TT..................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGT--CGGAGAGC-TTGTTTGC............................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CAGAATTGTGAAGGTCGCGC--GC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTGT----GTGTGTGT--CGGAGAG......................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................CAGCAGTCGC---------------------------------------GAACAGCAGCC---------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................TGTTCTGCCAGCAGTCGC---------------------------------------GAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CAGAATTGTGAAGGTCGCGC--GCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA------------ACGCAC----------------GA-AACCTCGTC..................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..............................................................................AGTCGC---------------------------------------GAACAGCAGCC---------------AT--A--------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GCATGAGTGTCTTAATG-------CCTG-----------------------..............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TGT------GTGT-GGCGCGAGAGTAA------G------------TGGGAG..................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................TCTCCCACCATGAGTGCATGA...........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA------------ACGCAC----------------GA-AACCTCGTCC---------AA-----------...........................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................AGCAGTCGC---------------------------------------GAACAGCAGCC---------------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................TTGTTATTAAC---CAGGTG----------G----.......................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................GGCGCGAGAGTAA------G------------TGGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................CCAGCAGTCGC---------------------------------------GAACAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT--CGGAGAGC-TTGTTTGCA...........................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCC---------AA-----------AATC-----------TGTTC--------CAAGC..........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................CGAGAGTAA------G------------TGGGAGCGCCTC............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................AGTAA------G------------TGGGAGCGCCTCAAT.........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGTCC---------AA-----------AATC-----------TGTTC--------CAA............	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................TTTGT------GTGT-GGCGCGAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCGTCC---------AA-----------AATC-----------TGTTC--------C..............	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................TATTAAC---CAGGTG----------G----GTCTCC.................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--CGGAGAGC-TTGTTTGCATG.........................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TTTT-------GTTTGT------GTGT-GGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGT----GTGTGTGT--CGGA.........................................................................................................................................................................................................................................	21	5	0.20	1	0	0	0	0	0	1	0	0	0	0

droVir3

TGTGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------GT----GTGTGT----GTGTGTGT--GTGT--GTATT----------GCTTGA-----A------------------------A--------AT-GAATTGATTTATTC----------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------GT----GTGTGT----GTGTGTGT--GTGT--.......................................................................................................................................................................................................................................	21	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0

droMoj3

CACAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGTG-----------------------C----GTTA----GTGTGT----GCGTGTGT--GT-------GT----------CTTTCT-----A------------------GA--TCA--------AG-CC--------------GTTTT-ATCAG-------CGACATG-----CCGCCA--------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................TG-----------------------C----GTTA----GTGTGT----GCGTGTG................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0

droGri2

TCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----TTGTG-----------------------TGTGTGTGT----GTGTGT----GTGTGTGT--GTGA--AAAAT----------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_20408

x:5746958-5747175 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-12.7	-12.4	-12.3