ID:

dsi_20399

 Coordinate:

2l:3652136-3652408 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [2l_3652409_3652506_+]; CDS [2l_3652409_3652506_+]; exon [2l_3652010_3652135_+]; CDS [2l_3652010_3652135_+]; intron [2l_3652136_3652408_+]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTCGAGAACCACGAAAACGACTATGAGCTGCTCACAGTCAACAATTCCATGTAATTAATTTTATTCTCGTTTAAAATACTAAATGAAAAAATCCTACTTTTTTATAACTTTATGATTATAATTTGTAAACTGTTCCAATTTCGCTGTGCCTATTCTACTAGTCTTTTAATGGAAATCTAATTTCTAATTTCATTTTTTTCTATTCATTCCATTTCATTTTCTACAATTTTCCTACCTGTAGTTTGAGTTTTGACTATGAAAACAGGTAAGATATATATAACTATTTTGTAAAGTGGCCATTAATACTAAATTTCCTTAACTAGGACCTTTGAAACCTGGAGCTCTAAGATCGACGCTCGTCACAATTATTGGA
**************************************************...((((((.......(((((((......)))))))........(((....((((((........))))))...)))...............((((((.......))).))).....((((((((.....................))))))))....((((((.......(((((...((.(((((((..((..(((....)))..))..))))))).))..............)))))))))))..))))))...................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
..............................................................................................................................................................................................................................................................................................................................................CCTGGAGCTCTAAGATCGACGCTC............... 24 0 1 2.00 2 0 0 2 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................GGACCTTTGAAACCTGGAGCT.............................. 21 0 1 2.00 2 1 0 0 0 0 1 0 0 0
......AACCACGAAAACGACTATGAGCT........................................................................................................................................................................................................................................................................................................................................................ 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................TAGTCCAATTTCGCTCTGCC............................................................................................................................................................................................................................... 20 3 8 1.75 14 0 14 0 0 0 0 0 0 0
.........CACGAAAACGACTATGAGC......................................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................................TCCATTTTGAGTTTTGACTATGA.................................................................................................................. 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................TGAGTTTTGACTATGAAAACAGGACC........................................................................................................ 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................TTGAAACCTGGAGCTCTAAGATCGA.................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................CTACCTGTAGTTTGAAATTTGAC....................................................................................................................... 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................................................................................................TAGTCCAATTTCGCTCTGC................................................................................................................................................................................................................................ 19 3 20 0.90 18 0 18 0 0 0 0 0 0 0
..................................................................................................................................TATTCCAATTTCGCTCTGCC............................................................................................................................................................................................................................... 20 2 2 0.50 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................GCTCTAAGTTCGACG.................. 15 1 3 0.33 1 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................................................................................................................................ACTAGGACCTTTGAA........................................ 15 0 3 0.33 1 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................................................................................................................AGGACCTTTGAAAGCT.................................... 16 1 4 0.25 1 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................TCTAGTTTCATTTTTTTAAATT......................................................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 1
...................................................................................TGAACAAATGCTATTTTTTTA............................................................................................................................................................................................................................................................................. 21 3 20 0.05 1 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

AAGCTCTTGGTGCTTTTGCTGATACTCGACGAGTGTCAGTTGTTAAGGTACATTAATTAAAATAAGAGCAAATTTTATGATTTACTTTTTTAGGATGAAAAAATATTGAAATACTAATATTAAACATTTGACAAGGTTAAAGCGACACGGATAAGATGATCAGAAAATTACCTTTAGATTAAAGATTAAAGTAAAAAAAGATAAGTAAGGTAAAGTAAAAGATGTTAAAAGGATGGACATCAAACTCAAAACTGATACTTTTGTCCATTCTATATATATTGATAAAACATTTCACCGGTAATTATGATTTAAAGGAATTGATCCTGGAAACTTTGGACCTCGAGATTCTAGCTGCGAGCAGTGTTAATAACCT
**************************************************...((((((.......(((((((......)))))))........(((....((((((........))))))...)))...............((((((.......))).))).....((((((((.....................))))))))....((((((.......(((((...((.(((((((..((..(((....)))..))..))))))).))..............)))))))))))..))))))...................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 GSM343915
embryo
 M024
male body
............................................................................................................................................GGCGACACGGATAAGA......................................................................................................................................................................................................................... 16 1 2 0.50 1 1 0 0 0 0 0 0
.................................................................................................................................GACAAGGCTAAAGCGA.................................................................................................................................................................................................................................... 16 1 8 0.25 2 2 0 0 0 0 0 0
....................................................................................................................................CAGGTTAAAGCGAGACGGAAA............................................................................................................................................................................................................................ 21 3 4 0.25 1 0 0 1 0 0 0 0
.................................................................................................................................................CAGGGATAAGATGTTCA................................................................................................................................................................................................................... 17 2 5 0.20 1 0 0 0 1 0 0 0
................................................................................................................................................................................................AAAAGAAGATATGTAAGGT.................................................................................................................................................................. 19 2 6 0.17 1 0 0 1 0 0 0 0
.................................................................................................AAAACATATTGAAATA.................................................................................................................................................................................................................................................................... 16 1 20 0.15 3 0 3 0 0 0 0 0
.........................................................................................................................................TAAAGCGACTCGTATAGGAT........................................................................................................................................................................................................................ 20 3 7 0.14 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................ACAACTGATACTGTTGTC............................................................................................................ 18 2 7 0.14 1 0 1 0 0 0 0 0
................................................................................................................................................................................................................GGTAAAGTAATGGATGTTATA................................................................................................................................................ 21 3 9 0.11 1 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................................................................................................................................TTTGGTCCTCGAGAT........................... 15 1 9 0.11 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................AACTGATACTGTTGT............................................................................................................. 15 1 20 0.10 2 0 2 0 0 0 0 0
...........................................................................................................................................AGGCGACACGGATAA........................................................................................................................................................................................................................... 15 1 14 0.07 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................TTAATTGTGATTTATAGGAAT....................................................... 21 3 14 0.07 1 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................CCCGTAATAATGATTTAAAC........................................................... 20 3 16 0.06 1 0 0 0 0 0 1 0
..................................................................................................................................ACAAGGCTAAAGCGA.................................................................................................................................................................................................................................... 15 1 17 0.06 1 1 0 0 0 0 0 0
....................................................................................................................................................................................AAAGATGAAAGTAAAAA................................................................................................................................................................................ 17 1 20 0.05 1 0 0 0 1 0 0 0
....................................................................................................................................................................................................................................................................................................................................................TGAGATTATAGCTGCGAC............... 18 3 20 0.05 1 0 0 0 0 0 0 1
.......................................................................................................................................................................................................................................................AAAACTGAAACTTTTGCC............................................................................................................ 18 2 20 0.05 1 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:3652086-3652458 + dsi_20399 TTCGAGAACCACGAAAACGACTATGAGCTGCTCACAGTCAACAATTCCATGTAATTAATTTTATTCTCGTTT-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATACTAA-ATGAAAAAATCCTACTTTTTTATA---------------------------------ACTTT---------ATGATTAT--------------------------AATTTGTAAACTGTTCCAA-TTTCGC------TGT-------------------------GCCTATTCT---ACTAGTCT------------------------------------------------TTTAATGGAAAT----CTAATTT--------CTAATTTCATTTTTTTCTATTCATTCCATTTCATT-------------TTCTACAATTTT-------------------------CCTACCTGTAGTTTGAGTTTTGACTATGAAAACAGGTAAGATATATAT---------------------------------A--------------------------------ACTATTTTGTAAA--G------------TGGCCATTAATA---CT-A-A--ATTTCCTT---------------------AACTAGGACCTTTGAAACCTGGAGCTCTAAGATCGACGCTCGTCACAATTATTGGA
droSec2 scaffold_5:1902066-1902423 + TTCGAGAACCACGAAAACGACTATGAGCTGCTCACAGTCAACAATTCCATGTAATTACTTTTATTTTCGTTT-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATACTAA-ATGAAAATATTCTACATTTTTTTA---------------------------------ACTTT---------ATGATTAT--------------------------AATTTGTAAACTGTTCCAA-TTTGTC------TGT-------------------------GCCTATTCT---ACTAGTCT------------------------------------------------TTCAATGGAAAT----CTAATTT--------CTAATTTAATTTT-TTC--------------CATT-------------TTCTACAATTTT-------------------------CCTACCTGTAGTTTGAGTTTTGACTATGAAAACAGGTAAGATAAATAT---------------------------------A--------------------------------ACTATTTTGTAAA--G------------TGGCCATTAATA---TT-A-A--ATTTCCTT---------------------ATCTAGGACCTTTGAAACCTGGAGCTCCAAGATCGACGCTCGTCACAATTATTGGA
dm3 chr2L:3799988-3800339 + TTCGAGAATCACGAAAACGACTATGAGCTGCTCACAGTCAACAATTCCATGTAATTATTATT------ATTT-------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATTAT-ATGCAAATATTCTTCCTTTTTATA---------------------------------ACTTT---------ATGATTAT--------------------------TATTTGTAAACTGTTCCAA-TTTCTC------TGT-------------------------TCCTATTCT---ACTAGTCT------------------------------------------------ATTAATGGGAAT----CTAATTT--------CTAATTTTATTTT-TTC--------------CATT-------------TTCTACAATTTT-------------------------CCTACCTGTAGTTTGAGTTTTGACTATGAAAACAGGTAAGATAAATAT---------------------------------A--------------------------------AGTCCTTTGTTAA--G------------TGGCCATTAATA---TT-G-A--CTTTCTCT---------------------ATCTAGGACCTTTGAAACCTGGAGCTCTAAGATCGACGCTCGTCACAATTATTGGA
droEre2 scaffold_4929:3845459-3845794 + TTCGAGAACCACGAAAACGACTATGAGCTGCTTACAGTCAACAATTCCATGTAACTATTCTTGCTCCTATCT-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGATTTT-ATGAAAATACTCGCC-TTTTTATA---------------------------------ACTTT---------A----------------------------------------------TTCCAA-TTTTTC------TGT-------------------------GCCCATTCT---ACTATTCT------------------------------------------------ATTAATGGCAAT----CTAATTT--------CTAATTTTACTTC-TTC--------------CATT-------------TCCT-CCATTTT-------------------------CCTACCTGTAGTTTGAGTTTTGACTATGAAAACAGGTAAGATATAAA----------------------------------A--------------------------------AGACCTTTGCAAA--G------------TGGTTATTAATA---TT-GTA--CCTTTCTT---------------------GACCAGGACCTTCGAAACCTGGAGCTCTAAGATCGATGCTCGTCACAATTATTGGA
droYak3 2L:3801686-3802042 + TTTGAGAACCACGAAAACGACTATGAGCTGCTCACAGTCAACAATTCCATGTAACTATTCTTGTTTTGATTT-------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTATTAT-ATGAAAATATTCGAC-TTATTACT---------------------------------ATTTT---------ATGATTAC--------------------------AATTTTTAAACTTTTCCAA-TTTTTC------TGT-------------------------ACCT-CTCT---ACTATGCT------------------------------------------------ATTAATGGGAAT----CTAATTT--------CTAATTTTATTTC-TTC--------------CATT-------------TTCTACAATTTT-------------------------CCTACCTGTAGTTTGAGTTTTGACTATGAAAACAGGTAAGATAAAGAT---------------------------------A--------------------------------AGACCTTTGTAAA--T------------AATTTATTAATA---TT-GTA--TTTTTCTT---------------------AACTAGGACCTTTGAAACCTGGAGCTCTAAGATCGACGCTCGTCACAATTACTGGA
droEug1 scf7180000409554:2274864-2275184 - TTCGAGAACCACGAGAACGACTATGAGCTGCTAACCGTTAATAACTCCATGTAAGTATGGTT------AATC----CAGTC---------------------AAGTACAA-----------------------------------------------------------------------------------TA-T-----------------------------------------------------------------------------------------------------------AC------------------------------------------------------------------------------------------------------------------TTAGTCAGTTCTAG-TAGTCCTACTCTTAGT-------------------------CTT-AACT---TTTAAACT------------------------------------------------GCTAATGGGAAT----ATAATTT--------CTTACT----TTT-CTC--------------TATT-------------TTCCAACATTTT-------------------------CGCTCTTGTAGTTTGAGTTTTGACTATGAAAACAGGTAAGATGAAAAG---------------T-----------------G--------------------------------ACACTTTTCCT--GAC------------ATTCAATTAATA---TC-TGA--ACTCCCTG---------------------AACTAGGACCTTTGAAACGTGGAGCTCTAAGATCGATGCCCGTCACAACTATTGGA
droBia1 scf7180000302261:2187942-2188287 + TTCGAGAACTACGAAAACGATTACGAGCTGCTGACCGTCAATAATTCCATGTAAGTAGTATA-CCTTAATTT-------------------AAAGCAGTATTA--------------TAGAGG-------------------------------------------------------------AAAGC-AGA----A--------------------------------------------T-G-------------------------------------------------------------------AA-----GTCCTA-TCTTTATGTCT------------------------------A------------------------------------------------------------CTTCAAA----TCTACTTCTAAT-------------------------CTC-TCCT---TCGAAGCT------------------------------------------------ATTAATGGGAAT----CTAATTT--------CTTACT----TGT-TTC--------------TATT-------------TCCTACCATTTT-------------------------CCTACCTGTAGTTTGAGCTTTGACTATGAAAACAGGTAAGAGAAGTAA---------------C-----------------C--------------------------------AAACATCTCTG--GAG------------CTTCCGTTAATT---TT-CCA--TTTATCTC---------------------AAACAGGACCTTTGAAACCTGGAGCTCTAAGATCGATGCCCGTCACAATTATTGGA
droTak1 scf7180000415709:38276-38610 - TTCGAGAACTACGAAAACGATTATGAGCTGCTCACCGTTAATAATTCCATGTAAGTAACGTA------ATTTTA----CTTATTTTATTA-TTAA-----------AAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC------------------------------------------------------------------------------------------------------------------CTAAACTGTTTCAA-TTGCTCTACTTCTAAT-------------------------CTC-ACTT---TTTAAACT------------------------------------------------ATTAATGGGAAT----CTAATTT--------CTTACTTCATTTT-TTA--------------TATT-------------TCCTACCATTTT-------------------------CCTACTTGTAGTTTGAGTTTTGACTATGAAAACAGGTAAGATAAAAAC---------------------------------A--------------AA---------GC-----ACAATTTTTTT--GGG------------AAATCATTAATTTA-TT-G-T--TT-CACTT--------------------AACCCAGGACCTTTGAAACCTGGAGCTCTAAGATCGATGCTCGTCACAATTATTGGA
droEle1 scf7180000490728:557303-557690 + TTCGAGAACTACGAAAACGATTATGAGCTGCTTACCGTCAACAATTCTATGTAAATATTGTTTCTGTTATTT-------------------AAAA-----------AAAAATCTCTACAGAGA-------------------------------------------------------------AAATCCAGA----A-----------------------------------------------------------------------------------------------------------------CAA-----GTCATT-TTTGTATGACT------------------------------TTTTC---------ATGTTTAT--------------------------TTTATTTCAATTGTTCCAA-TATTTCGTCTTCTAAA-------------------------CCA-CCCT---TTTAAACT------------------------------------------------CTTAATGGGAAT----CTAATTT--------CTTACTATATTTTTTTC--------------TATT-------------TCCCACAATTTT-------------------------CCTTCCTGTAGTTTGAGTTTTGACTATGAAAACAGGTAAGATAAAATATTGAA-----------------------------CT-----TAAACTAAAACAATATTAAT-----ACAATTTTT-------------------------------------T-TTAA--CCCTC---------------------AACTAGGACCTTTGAAACCTGGAGCTCAAAGATTGATGCTCGTCATAACTATTGGA
droRho1 scf7180000779430:70035-70427 - TTCGAGAATTACGAAAACGACTATGAGCTGCTAACCGTCAATAATTCCATGTAAATATTATTCCTA-TGTTT-----------------ATAAAAAAATATTA----GAAATCTGCGCAGAGA-------------------------------------------------------------AAATCCAGA----A-----------------------------------------------------------------------------------------------------------------TAA-----GTAGTA-CTTTAATAACT------------------------------A---TGATGTTTTTCTG--------------------------------TGGA-GAAACTTTTTCAAACCTTTTAACTCATAAT-------------------------CTT-ACCT---TATAAACT------------------------------------------------GTTCATGGGAAT----CTAATTT--------TT-ACTCTATTTT-TTC--------------TATT-------------TCCTACAATTAT-------------------------CCTTCATGTAGTTTGAGTTTTGACTATGAAAACAGGTAAGATAAAATTTAAGA-----------------------------CATAATCA------------------------------ACACA--AAG------------CTTTTATTAATT---TT-A-CAAA--TCTTC---------------------AACTAGGTCCTTTGAAACCTGGAGCTCAAAGATCGATGCTCGCCACAATTATTGGA
droFic1 scf7180000453924:1780577-1780872 + TTCGAAAACTACGAAAACGATTATGAGCTGTTAACCGTCAACAATTCGATGTAAGTTTTA---------TCT-------------------AAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGC-----------------------------------------------------------------------ATTTACTT----------------------------------------TTCACAAC-------------------------TTC-ACTT---TTCAATCT------------------------------------------------GTTTCTGGGTGC----CTAATCG--------ATGCCT---TTTT-CTA--------------TATT-------------TCCTTCAATTTT-------------------------CCTTCCTGTAGTTTGAGTTTTGACTATGAAAACAGGTAAGACAAAATATTAGATAACCGAATGCA-----------------------------------------------------------------------------ACATATTTAACTTA---T---AAATCTCTTC---------------------AACTAGGACCTTTGAAACCTGGAGCTCTAAGATTGATGCTCGCCACAATTACTGGA
droKik1 scf7180000302401:721747-722135 + TTTGAGAACTATGAAAACGATTATGAGCTGCTGACAGTCAATAATTCTATGTAAATATTTTT------ATTT-------------------TAAG----------AAAAA--------------------------------------------------------------------------AAAAC-ACA----A------------------T--------------------------------------------------------TCTTGAAA-------------------------------------------------------------------------TATTTTGTTGTGA----------------------------ACTTTTGT------------------------------------TTACCTCTTAAT-------------------------TTT-ATCT---T-TAATCTTTAAGTTT--TTGAGTTTTTAAATTCCTTCTAGACCTAAGCTCTTTCTTTTAATCCTTTT----CTAATCT--------CTAAATTCTTTTT-CTC--------------TATT-------------TTCTCCTCCTTT-------------------------TGCCTGTGTAGTTTGAGTTTTGACTATGAAAACAGGTAAGATAAATCG----G-----------------------------TT-----TAAACTAAA---------GCACTTAAGACTTTTATTAA--T------------TTTCAA-----------TT---CA--TTTTC---------------------CCTTAGGACCTTTGAAACATGGAGCTCTAAGATCGATGCTCGTCACAATTATTGGA
droAna3 scaffold_12916:1805650-1805971 + TTCGAGAACTACGAGAACGATTACGAGCTGCTGACAGTCAACAATTCAATGTAAATAGTTAT----------------------------------------AAGTCTTA-----------------------------------------------------------------------------------GATTA--------------------------------------------G-AGCCTTATATATTTTAAAC--------------------CTATATCCTTTTATTC--------------------------------------------------------------------------------------------------------------------------AA-----------------------------------------------------AAC-TTCTA---CCATT------------TGGAG--------------------------------------TCTAAAA----CTAATCC--------TTCACTTTCTTTC-TTC--------------CT-T-------------CCCCAATGCTTT--------------------------CCTCCCGTAGTTTGAGTTTTGACTATGAAAACAGGTAAGAATG-------------------CCTCAC-----AAA------TCCACTTAAAC--------------------AGAC------------------------CTTTTA-TAAAGCAA--T---ATA--TCTCC---------------------CACCAGGACATTTGAAACCTGGAGCTCCAAGATCGACGCCCGCCACAACTATTGGA
droBip1 scf7180000396728:463701-464023 + TTTGAGAACTACGAGAATGATTACGAGCTGCTGACAGTCAACAACTCAATGTAAATAGTATT----------------------------------------AAACGATA-----------------------------------------------------------------------------------GATTC--------------------------------------------T-AGACTTAATAATGTCAAAC--------------------CCTTATCCATTTATTTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAC-TTCCACCTTGAG--------------------------------------------------------TCTGAAA----CTAATCC--------TTCACTTTCTTTC-TTC--------------CTTC-------------CTCAA-TGCTTT-------------------------TCCTTCCGTAGTTTGAGTTTTGACTATGAAAACAGGTAAGAATG-------------------CCACAC-----AAT------TTAACTTACAC--------------------A------------GAC------------TTCATATTAA-GTAA--TT-CATA--TCCCC---------------------CACCAGGACATTTGAAACCTGGAGCTCGAAGATCGACGCCCGGCACAACTATTGGA
dp5 4_group3:4925159-4925557 - TTTGAGAACTACGAGAACGATTATGAACTGCTGACTGTTAATAATTCCATGTAAATATG-------TGATTTAATATAGTC-------------------TTAAGCAAAA-----------------------------------------------------------------------------------GGCTA--------------------------------------------T-GGAGTCGATT--TTCTAGCTCTTTTATTCTTTTGAAATCTTCTTTCTATATATCTAAATAATTCG-ATAA-----GTAGTT-TCTTTA-------------------------------------------------------------------------------------------------------TATCTCGACTCCTGAG-------------------------CTC-TTTT---TCTACCTC--------TT--------------------------------------CTTTGTGGGAACTTTACTAATTT--------CTTTCC----TTG-ATC--------------TATTTT--------TC-TTCTA-----CG-------------------------TCTATTTGTAGTATGAGTTTTGACTATGAAAACAGGTAAGATATACCTATAAAAAACC---------------------------------------------------CTCTAA------------GAA------------CCCCTGCTTATGTA---T---AAA-TCTCAA---------------------CCCTAGGACCTTTGAAACCTGGAGTTCGAGGATCGATGCCCGTCACAACTATTGGA
droPer2 scaffold_1:6415808-6416206 - TTTGAGAACTACGAGAACGATTATGAACTGCTGACTGTTAATAATTCCATGTAAATATG-------TGATTTAATATAGTC-------------------TTAAGCAAAA-----------------------------------------------------------------------------------GGCTA--------------------------------------------T-GGAGTCGATT--TTCTAGTCCTTTTATTCTTTTGAAATCTTCTTTCTATATATCTAAATAATTCG-ATAA-----GTAGTT-TCTTTA-------------------------------------------------------------------------------------------------------TATCTCGACTCCTGAG-------------------------CTC-TTCT---TCTAGGTC--------TT--------------------------------------CTTTGTGGGAACTTTACTAATTT--------CTTTCC----TTG-ATC--------------TATTTT--------TC-TTCT---A--TG-------------------------TCTATTTGTAGTATGAGTTTTGACTATGAAAACAGGTAAGATATACCTATAAAAAACC---------------------------------------------------CTCTAA------------GAA------------CCCCTGCTAATGTA---T---AAA-TCTCAC---------------------CCCTAGGACCTTTGAAACCTGGAGTTCGAGGATCGATGCCCGTCACAACTATTGGA
droWil2 scf2_1100000004521:9257283-9257580 - TTCGAAAACTATGAAAATGATTATGAACTCTTGACTGTTAATAATTCCATGTAAGTTACTAA------ACTT-----------T--------ATG------------------------------------------------------------------------------------------------------A------------------T--------------------------------------------------------CCCTCGAA-------------------------------------------------------------------------GATTTTGTGATGA----------------------------AGAA-------AATATATTATATTAGAA-----------------------------------------------------GAC-TTCAA-------TAC------------------------------------------------ATTGGAGGATAT----CAAATAAATATCCCTTTCACTTTGTTCT-TAC--------------TC---------GCTCTTAAAAAGTTACTAAATGTAATAAAATGTTTGTACTTATTTTACCTACAGCTTAAGTTTTGACTATGAGAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACATTTGAGACCTGGAGCTCAAAGATTGATGCACGTCATAATTATTGGA
droVir3 scaffold_12963:14905996-14906477 - dvi_11960 TTCGAGAACTATGAGAATGACTACGAGCTGCTGACAGTCAACAATTCCATGTAAGTCAGTGTGTCCT-----ATTA--GTC----------GATT--------------AGTCTGTAC-----CCAAGCCCAACTGCAAAGCTCCGCAAGATCAAAGTAAGGGCGTAAATAATAATAAATCATA---------AAATAAAATAAATAATATTCCTATAAGTATTCCTTAAGCTAAATGGAAATGAGATT--------------------------------------------------------------------------------TATCAACTTTGGTTAGAAGGTTTTTCACTTGGCAGTGG----------------------------ATTTACGTTTC---------ACAT-------------------------TCTCAATGTAAAATTCAACCCACTTTTATCTAACT-TTCT-----------------------------------------------------------------------------ACTCT--------ACACCC---TTTT-CTT---------------TTT---------CCCCT--CGCTCTTCC-------------------------TCAACACCTAGCATGAGCTTTGATTATGAAAACAGGTAAGCACA-------------------TAATAC-----ACATAAGAAAA---------------A--------ATACAAAT------------A------------CTTATCGTTGCCTA-TT-G---AA--TCTCA---------------------TCTAAGGACCTTCGAAACCTGGAGCTCCAAGATAGACGCACGTCACAATTACTGGA
droMoj3 scaffold_6500:17859967-17860171 - TTT-------------------------------------------ATATGCAATTTCTATCTC-------T-----------T--------ATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTA--CC--------TTCTCTCTCT----CTC--------------TCTC-------------TTCCTCTTCACT-------------------------TCCACACGTAGTATGAGCTTTGATTACGAAAACAGGTAAGCAACTC--------------------------------------------------------------------------ACTCA--GGGTCCCCATTAGCATCCTAGACTAAA-----CT-A--ATTTCTCA---------------------TTTAAGGACCTTCGAGACATGGAGCTCCAAGATTGATGCACGCCACAATTACTGGA
droGri2 scaffold_15126:4471313-4471640 + AAT--------------------------------------------------------TCAATTTCTATTC-------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATACTAAAATGAGAA----------CTGTATA---------------------------------ACTTC---------AAGAATATCTACAT--------TTT---------ATTTTGCACAGCGT------------------------AATTATGATCCCATTTATATTAAATA-TTCT-----------------------------------------------------------------------------TTTCT-----------ACTCTCTTTT-CTC---------TACTCCACT--CTCTTGCTCTCTCCCACTTCCTC-------------------------AACGCACCTAGTATGAGCTTTGATTATGAAAACAGGTAAGGTGAATGC----------------TCCATTCTATCCATA------------------------------------------AGAAAA--G------------TCG-AATTAATCTA---T---ATTTTTCTCCAACTTCGCCATCGCCATATTACTCAAGGACCTTTGAAACGTGGAGCTCCAAGATAGATGCTCGACACAATTATTGGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTCGAGAACCACGAAAACGACTATGAGCTGCTCACAGTCAACAATTCCATGTAATTAATTTTATTCTCGTTT-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATACTAA-ATGAAAAAATCCTACTTTTTTATA---------------------------------ACTTT---------ATGATTAT--------------------------AATTTGTAAACTGTTCCAA-TTTCGC------TGT-------------------------GCCTATTCT---ACTAGTCT------------------------------------------------TTTAATGGAAAT----CTAATTT--------CTAATTTCATTTTTTTCTATTCATTCCATTTCATT-------------TTCTACAATTTT-------------------------CCTACCTGTAGTTTGAGTTTTGACTATGAAAACAGGTAAGATATATAT---------------------------------A--------------------------------ACTATTTTGTAAA--G------------TGGCCATTAATA---CT-A-A--ATTTCCTT---------------------AACTAGGACCTTTGAAACCTGGAGCTCTAAGATCGACGCTCGTCACAATTATTGGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGAGCTCTAAGATCGACGCTC...............2412.00220000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTTTGAAACCTGGAGCT..............................2112.00200110000000000000
......AACCACGAAAACGACTATGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200200000000000000
.........CACGAAAACGACTATGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTTTTGACTATGAAAACAGGACC...................................................................................................................................................................................................................2611.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAACCTGGAGCTCTAAGATCGA....................2511.00101000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGGACCTTTGAA........................................1530.33100000000001000000
droSec2
TTCGAGAACCACGAAAACGACTATGAGCTGCTCACAGTCAACAATTCCATGTAATTACTTTTATTTTCGTTT-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATACTAA-ATGAAAATATTCTACATTTTTTTA---------------------------------ACTTT---------ATGATTAT--------------------------AATTTGTAAACTGTTCCAA-TTTGTC------TGT-------------------------GCCTATTCT---ACTAGTCT------------------------------------------------TTCAATGGAAAT----CTAATTT--------CTAATTTAATTTT-TTC--------------CATT-------------TTCTACAATTTT-------------------------CCTACCTGTAGTTTGAGTTTTGACTATGAAAACAGGTAAGATAAATAT---------------------------------A--------------------------------ACTATTTTGTAAA--G------------TGGCCATTAATA---TT-A-A--ATTTCCTT---------------------ATCTAGGACCTTTGAAACCTGGAGCTCCAAGATCGACGCTCGTCACAATTATTGGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........CCACGAAAACGACTATGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACCTGGAGCTCCAAGATC......................2111.0011000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTGAAACCTGGAGCTCCAAGAT.......................2511.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGAAACCTGGAGCTCCAAGAT.......................2411.0010100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATA---TT-A-A--ATTTCCTT---------------------ATCTAGT.................................................2411.0010010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGCTCGTCACAATTATTGGA2311.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTTGAAACCTGGAGCTCCAAGAT.......................2611.0011000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTCCAAGATCGACGCT................1911.0010010
dm3
TTCGAGAATCACGAAAACGACTATGAGCTGCTCACAGTCAACAATTCCATGTAATTATTATT------ATTT-------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATTAT-ATGCAAATATTCTTCCTTTTTATA---------------------------------ACTTT---------ATGATTAT--------------------------TATTTGTAAACTGTTCCAA-TTTCTC------TGT-------------------------TCCTATTCT---ACTAGTCT------------------------------------------------ATTAATGGGAAT----CTAATTT--------CTAATTTTATTTT-TTC--------------CATT-------------TTCTACAATTTT-------------------------CCTACCTGTAGTTTGAGTTTTGACTATGAAAACAGGTAAGATAAATAT---------------------------------A--------------------------------AGTCCTTTGTTAA--G------------TGGCCATTAATA---TT-G-A--CTTTCTCT---------------------ATCTAGGACCTTTGAAACCTGGAGCTCTAAGATCGACGCTCGTCACAATTATTGGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATA---TT-G-A--CTTTCTCT---------------------ATCTAG..................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATA---TT-G-A--CTTTCTCT---------------------ATCTAG..................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ATGAGCTGCTCACAGTCAACAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAGATCGACGCTCGTCACAAT.......2412.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACCTGGAGCTCTAAGAT.......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATA---TT-G-A--CTTTCTCT---------------------ATCTAGT.................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAACCTGGAGCTCTAA..........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CTATGAGCTGCTCACAGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............AACGACTATGAGCTGCTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA--G------------TGGCCATTAATA---TT-G-........................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATA---TT-G-A--CTTTCTCT---------------------ATCTAG..................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAGATCGACGCTCGTCACAAT.......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.........................................................TTATT------ATTT-------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATTAT-A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCTAAGATCGACGCTCGTCACAAT.......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTGGAGCTCTAAGATCGACGCT................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACCTGGAGCTCTAAGA........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTGTTAA--G------------TGGCCAGCT...................................................................................................20120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC--------------CATT-------------TTCTACAATTAG-------------------------..........................................................................................................................................................................................................................................................19190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droEre2
TTCGAGAACCACGAAAACGACTATGAGCTGCTTACAGTCAACAATTCCATGTAACTATTCTTGCTCCTATCT-------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGATTTT-ATGAAAATACTCGCC-TTTTTATA---------------------------------ACTTT---------A----------------------------------------------TTCCAA-TTTTTC------TGT-------------------------GCCCATTCT---ACTATTCT------------------------------------------------ATTAATGGCAAT----CTAATTT--------CTAATTTTACTTC-TTC--------------CATT-------------TCCT-CCATTTT-------------------------CCTACCTGTAGTTTGAGTTTTGACTATGAAAACAGGTAAGATATAAA----------------------------------A--------------------------------AGACCTTTGCAAA--G------------TGGTTATTAATA---TT-GTA--CCTTTCTT---------------------GACCAGGACCTTCGAAACCTGGAGCTCTAAGATCGATGCTCGTCACAATTATTGGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................GACTATGAGCTGCTTACAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0041001020
...............AACGACTATGAGCTGCTTACAGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTTCGAAACCTGGAGC...............................2011.0010100000
..............AAACGACTATGAGCTGCTTACAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
....................CTATGAGCTGCTTACAGTCAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAGATCGATGCTCGTCACA.........2111.0011000000
..............AAACGACTATGAGCTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001000
droYak3
TTTGAGAACCACGAAAACGACTATGAGCTGCTCACAGTCAACAATTCCATGTAACTATTCTTGTTTTGATTT-------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTATTAT-ATGAAAATATTCGAC-TTATTACT---------------------------------ATTTT---------ATGATTAC--------------------------AATTTTTAAACTTTTCCAA-TTTTTC------TGT-------------------------ACCT-CTCT---ACTATGCT------------------------------------------------ATTAATGGGAAT----CTAATTT--------CTAATTTTATTTC-TTC--------------CATT-------------TTCTACAATTTT-------------------------CCTACCTGTAGTTTGAGTTTTGACTATGAAAACAGGTAAGATAAAGAT---------------------------------A--------------------------------AGACCTTTGTAAA--T------------AATTTATTAATA---TT-GTA--TTTTTCTT---------------------AACTAGGACCTTTGAAACCTGGAGCTCTAAGATCGACGCTCGTCACAATTACTGGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTAAGATCGACGCTCGT.............2011.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGCTCGTCACAATTACTGGA2311.00101000000000
..............AAACGACTATGAGCTGCTCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
TTTGAGAACCACGAAAACGACTATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTTTGAAACCTGGA.................................1811.00101000000000
..........ACGAAAACGACTATGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
droEug1
TTCGAGAACCACGAGAACGACTATGAGCTGCTAACCGTTAATAACTCCATGTAAGTATGGTT------AATC----CAGTC---------------------AAGTACAA-----------------------------------------------------------------------------------TA-T-----------------------------------------------------------------------------------------------------------AC------------------------------------------------------------------------------------------------------------------TTAGTCAGTTCTAG-TAGTCCTACTCTTAGT-------------------------CTT-AACT---TTTAAACT------------------------------------------------GCTAATGGGAAT----ATAATTT--------CTTACT----TTT-CTC--------------TATT-------------TTCCAACATTTT-------------------------CGCTCTTGTAGTTTGAGTTTTGACTATGAAAACAGGTAAGATGAAAAG---------------T-----------------G--------------------------------ACACTTTTCCT--GAC------------ATTCAATTAATA---TC-TGA--ACTCCCTG---------------------AACTAGGACCTTTGAAACGTGGAGCTCTAAGATCGATGCCCGTCACAACTATTGGASizeHit CountTotal NormTotal
No Reads
droBia1
TTCGAGAACTACGAAAACGATTACGAGCTGCTGACCGTCAATAATTCCATGTAAGTAGTATA-CCTTAATTT-------------------AAAGCAGTATTA--------------TAGAGG-------------------------------------------------------------AAAGC-AGA----A--------------------------------------------T-G-------------------------------------------------------------------AA-----GTCCTA-TCTTTATGTCT------------------------------A------------------------------------------------------------CTTCAAA----TCTACTTCTAAT-------------------------CTC-TCCT---TCGAAGCT------------------------------------------------ATTAATGGGAAT----CTAATTT--------CTTACT----TGT-TTC--------------TATT-------------TCCTACCATTTT-------------------------CCTACCTGTAGTTTGAGCTTTGACTATGAAAACAGGTAAGAGAAGTAA---------------C-----------------C--------------------------------AAACATCTCTG--GAG------------CTTCCGTTAATT---TT-CCA--TTTATCTC---------------------AAACAGGACCTTTGAAACCTGGAGCTCTAAGATCGATGCCCGTCACAATTATTGGASizeHit CountTotal NormTotal
No Reads
droTak1
TTCGAGAACTACGAAAACGATTATGAGCTGCTCACCGTTAATAATTCCATGTAAGTAACGTA------ATTTTA----CTTATTTTATTA-TTAA-----------AAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC------------------------------------------------------------------------------------------------------------------CTAAACTGTTTCAA-TTGCTCTACTTCTAAT-------------------------CTC-ACTT---TTTAAACT------------------------------------------------ATTAATGGGAAT----CTAATTT--------CTTACTTCATTTT-TTA--------------TATT-------------TCCTACCATTTT-------------------------CCTACTTGTAGTTTGAGTTTTGACTATGAAAACAGGTAAGATAAAAAC---------------------------------A--------------AA---------GC-----ACAATTTTTTT--GGG------------AAATCATTAATTTA-TT-G-T--TT-CACTT--------------------AACCCAGGACCTTTGAAACCTGGAGCTCTAAGATCGATGCTCGTCACAATTATTGGASizeHit CountTotal NormTotal
No Reads
droEle1
TTCGAGAACTACGAAAACGATTATGAGCTGCTTACCGTCAACAATTCTATGTAAATATTGTTTCTGTTATTT-------------------AAAA-----------AAAAATCTCTACAGAGA-------------------------------------------------------------AAATCCAGA----A-----------------------------------------------------------------------------------------------------------------CAA-----GTCATT-TTTGTATGACT------------------------------TTTTC---------ATGTTTAT--------------------------TTTATTTCAATTGTTCCAA-TATTTCGTCTTCTAAA-------------------------CCA-CCCT---TTTAAACT------------------------------------------------CTTAATGGGAAT----CTAATTT--------CTTACTATATTTTTTTC--------------TATT-------------TCCCACAATTTT-------------------------CCTTCCTGTAGTTTGAGTTTTGACTATGAAAACAGGTAAGATAAAATATTGAA-----------------------------CT-----TAAACTAAAACAATATTAAT-----ACAATTTTT-------------------------------------T-TTAA--CCCTC---------------------AACTAGGACCTTTGAAACCTGGAGCTCAAAGATTGATGCTCGTCATAACTATTGGASizeHit CountTotal NormTotal
No Reads
droRho1
TTCGAGAATTACGAAAACGACTATGAGCTGCTAACCGTCAATAATTCCATGTAAATATTATTCCTA-TGTTT-----------------ATAAAAAAATATTA----GAAATCTGCGCAGAGA-------------------------------------------------------------AAATCCAGA----A-----------------------------------------------------------------------------------------------------------------TAA-----GTAGTA-CTTTAATAACT------------------------------A---TGATGTTTTTCTG--------------------------------TGGA-GAAACTTTTTCAAACCTTTTAACTCATAAT-------------------------CTT-ACCT---TATAAACT------------------------------------------------GTTCATGGGAAT----CTAATTT--------TT-ACTCTATTTT-TTC--------------TATT-------------TCCTACAATTAT-------------------------CCTTCATGTAGTTTGAGTTTTGACTATGAAAACAGGTAAGATAAAATTTAAGA-----------------------------CATAATCA------------------------------ACACA--AAG------------CTTTTATTAATT---TT-A-CAAA--TCTTC---------------------AACTAGGTCCTTTGAAACCTGGAGCTCAAAGATCGATGCTCGCCACAATTATTGGASizeHit CountTotal NormTotal
No Reads
droFic1
TTCGAAAACTACGAAAACGATTATGAGCTGTTAACCGTCAACAATTCGATGTAAGTTTTA---------TCT-------------------AAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGC-----------------------------------------------------------------------ATTTACTT----------------------------------------TTCACAAC-------------------------TTC-ACTT---TTCAATCT------------------------------------------------GTTTCTGGGTGC----CTAATCG--------ATGCCT---TTTT-CTA--------------TATT-------------TCCTTCAATTTT-------------------------CCTTCCTGTAGTTTGAGTTTTGACTATGAAAACAGGTAAGACAAAATATTAGATAACCGAATGCA-----------------------------------------------------------------------------ACATATTTAACTTA---T---AAATCTCTTC---------------------AACTAGGACCTTTGAAACCTGGAGCTCTAAGATTGATGCTCGCCACAATTACTGGASizeHit CountTotal NormTotal
No Reads
droKik1
TTTGAGAACTATGAAAACGATTATGAGCTGCTGACAGTCAATAATTCTATGTAAATATTTTT------ATTT-------------------TAAG----------AAAAA--------------------------------------------------------------------------AAAAC-ACA----A------------------T--------------------------------------------------------TCTTGAAA-------------------------------------------------------------------------TATTTTGTTGTGA----------------------------ACTTTTGT------------------------------------TTACCTCTTAAT-------------------------TTT-ATCT---T-TAATCTTTAAGTTT--TTGAGTTTTTAAATTCCTTCTAGACCTAAGCTCTTTCTTTTAATCCTTTT----CTAATCT--------CTAAATTCTTTTT-CTC--------------TATT-------------TTCTCCTCCTTT-------------------------TGCCTGTGTAGTTTGAGTTTTGACTATGAAAACAGGTAAGATAAATCG----G-----------------------------TT-----TAAACTAAA---------GCACTTAAGACTTTTATTAA--T------------TTTCAA-----------TT---CA--TTTTC---------------------CCTTAGGACCTTTGAAACATGGAGCTCTAAGATCGATGCTCGTCACAATTATTGGASizeHit CountTotal NormTotal
No Reads
droAna3
TTCGAGAACTACGAGAACGATTACGAGCTGCTGACAGTCAACAATTCAATGTAAATAGTTAT----------------------------------------AAGTCTTA-----------------------------------------------------------------------------------GATTA--------------------------------------------G-AGCCTTATATATTTTAAAC--------------------CTATATCCTTTTATTC--------------------------------------------------------------------------------------------------------------------------AA-----------------------------------------------------AAC-TTCTA---CCATT------------TGGAG--------------------------------------TCTAAAA----CTAATCC--------TTCACTTTCTTTC-TTC--------------CT-T-------------CCCCAATGCTTT--------------------------CCTCCCGTAGTTTGAGTTTTGACTATGAAAACAGGTAAGAATG-------------------CCTCAC-----AAA------TCCACTTAAAC--------------------AGAC------------------------CTTTTA-TAAAGCAA--T---ATA--TCTCC---------------------CACCAGGACATTTGAAACCTGGAGCTCCAAGATCGACGCCCGCCACAACTATTGGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................GATTACGAGCTGCTGACAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
TTCGAGAACTACGAGAACGATTACGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACCTGGAGCTCCAAG.........................1911.001100000
droBip1
TTTGAGAACTACGAGAATGATTACGAGCTGCTGACAGTCAACAACTCAATGTAAATAGTATT----------------------------------------AAACGATA-----------------------------------------------------------------------------------GATTC--------------------------------------------T-AGACTTAATAATGTCAAAC--------------------CCTTATCCATTTATTTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAC-TTCCACCTTGAG--------------------------------------------------------TCTGAAA----CTAATCC--------TTCACTTTCTTTC-TTC--------------CTTC-------------CTCAA-TGCTTT-------------------------TCCTTCCGTAGTTTGAGTTTTGACTATGAAAACAGGTAAGAATG-------------------CCACAC-----AAT------TTAACTTACAC--------------------A------------GAC------------TTCATATTAA-GTAA--TT-CATA--TCCCC---------------------CACCAGGACATTTGAAACCTGGAGCTCGAAGATCGACGCCCGGCACAACTATTGGASizeHit CountTotal NormTotal
No Reads
dp5
TTTGAGAACTACGAGAACGATTATGAACTGCTGACTGTTAATAATTCCATGTAAATATG-------TGATTTAATATAGTC-------------------TTAAGCAAAA-----------------------------------------------------------------------------------GGCTA--------------------------------------------T-GGAGTCGATT--TTCTAGCTCTTTTATTCTTTTGAAATCTTCTTTCTATATATCTAAATAATTCG-ATAA-----GTAGTT-TCTTTA-------------------------------------------------------------------------------------------------------TATCTCGACTCCTGAG-------------------------CTC-TTTT---TCTACCTC--------TT--------------------------------------CTTTGTGGGAACTTTACTAATTT--------CTTTCC----TTG-ATC--------------TATTTT--------TC-TTCTA-----CG-------------------------TCTATTTGTAGTATGAGTTTTGACTATGAAAACAGGTAAGATATACCTATAAAAAACC---------------------------------------------------CTCTAA------------GAA------------CCCCTGCTTATGTA---T---AAA-TCTCAA---------------------CCCTAGGACCTTTGAAACCTGGAGTTCGAGGATCGATGCCCGTCACAACTATTGGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCCGTCACAACTATTGGA2211.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTGGAGTTCGAGGATCGA....................2111.0010100000000
..........ACGAGAACGATTATGAACTGCTGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000001
..............GAACGATTATGAACTGCTGACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGATCGATGCCCGTCAC..........2011.0010100000000
..............GAACGATTATGAACTGCTGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
....................TTATGAACTGCTGACTGTTAATAATTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATGCCCGTCACAACTATTGGA2411.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTGGAGTTCGAGGATCGATGCCCGT.............2811.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTTTGAAACCTGGAGTTCGA...........................2411.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGATCGATGCCCGTCACAACTATTGGA2911.0010000001000
droPer2
TTTGAGAACTACGAGAACGATTATGAACTGCTGACTGTTAATAATTCCATGTAAATATG-------TGATTTAATATAGTC-------------------TTAAGCAAAA-----------------------------------------------------------------------------------GGCTA--------------------------------------------T-GGAGTCGATT--TTCTAGTCCTTTTATTCTTTTGAAATCTTCTTTCTATATATCTAAATAATTCG-ATAA-----GTAGTT-TCTTTA-------------------------------------------------------------------------------------------------------TATCTCGACTCCTGAG-------------------------CTC-TTCT---TCTAGGTC--------TT--------------------------------------CTTTGTGGGAACTTTACTAATTT--------CTTTCC----TTG-ATC--------------TATTTT--------TC-TTCT---A--TG-------------------------TCTATTTGTAGTATGAGTTTTGACTATGAAAACAGGTAAGATATACCTATAAAAAACC---------------------------------------------------CTCTAA------------GAA------------CCCCTGCTAATGTA---T---AAA-TCTCAC---------------------CCCTAGGACCTTTGAAACCTGGAGTTCGAGGATCGATGCCCGTCACAACTATTGGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............AACGATTATGAACTGCTGACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
............GAGAACGATTATGAACTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...GAGAACTACGAGAACGATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
........CTACGAGAACGATTATGAACTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...........CGAGAACGATTATGAACTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..............GAACGATTATGAACTGCTGACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..................GATTATGAACTGCTGACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
droWil2
TTCGAAAACTATGAAAATGATTATGAACTCTTGACTGTTAATAATTCCATGTAAGTTACTAA------ACTT-----------T--------ATG------------------------------------------------------------------------------------------------------A------------------T--------------------------------------------------------CCCTCGAA-------------------------------------------------------------------------GATTTTGTGATGA----------------------------AGAA-------AATATATTATATTAGAA-----------------------------------------------------GAC-TTCAA-------TAC------------------------------------------------ATTGGAGGATAT----CAAATAAATATCCCTTTCACTTTGTTCT-TAC--------------TC---------GCTCTTAAAAAGTTACTAAATGTAATAAAATGTTTGTACTTATTTTACCTACAGCTTAAGTTTTGACTATGAGAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACATTTGAGACCTGGAGCTCAAAGATTGATGCACGTCATAATTATTGGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............AAATGATTATGAACTCTTGACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00220000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATGCACGTCATAATTATTGGA2511.00100100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATTGATGCACGTCAT..........1811.00100001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------TAC------------------------------------------------ATTGGAGGATAT----CAA...........................................................................................................................................................................................................................................................................................................................................................2011.00100100
...................ATTATGAACTCTTGACTGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGGAGCTCAAAGATTGATGCACGTC............2911.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGATGCACGTCATAAT.......1911.00100010
...............AATGATTATGAACTCTTGACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
TTCGAAAACTATGAAAATGATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAAAGATTGATGCACGTC............2111.00101000
..............AAATGATTATGAACTCTTGACTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
...............AATGATTATGAACTCTTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGGAGCTCAAAGATTGATGCACGT.............2811.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGGAGCTCAAAGATT......................1911.00100010
droVir3
TTCGAGAACTATGAGAATGACTACGAGCTGCTGACAGTCAACAATTCCATGTAAGTCAGTGTGTCCT-----ATTA--GTC----------GATT--------------AGTCTGTAC-----CCAAGCCCAACTGCAAAGCTCCGCAAGATCAAAGTAAGGGCGTAAATAATAATAAATCATA---------AAATAAAATAAATAATATTCCTATAAGTATTCCTTAAGCTAAATGGAAATGAGATT--------------------------------------------------------------------------------TATCAACTTTGGTTAGAAGGTTTTTCACTTGGCAGTGG----------------------------ATTTACGTTTC---------ACAT-------------------------TCTCAATGTAAAATTCAACCCACTTTTATCTAACT-TTCT-----------------------------------------------------------------------------ACTCT--------ACACCC---TTTT-CTT---------------TTT---------CCCCT--CGCTCTTCC-------------------------TCAACACCTAGCATGAGCTTTGATTATGAAAACAGGTAAGCACA-------------------TAATAC-----ACATAAGAAAA---------------A--------ATACAAAT------------A------------CTTATCGTTGCCTA-TT-G---AA--TCTCA---------------------TCTAAGGACCTTCGAAACCTGGAGCTCCAAGATAGACGCACGTCACAATTACTGGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......ACTATGAGAATGACTACGAGCTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002001000000000000000000000000000000000000000000000000000000000010
..........ATGAGAATGACTACGAGCTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000000000100000000000000000000000000000000000000000000000001000
............GAGAATGACTACGAGCTGCTGACAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002001100000000000000000000000000000000000000000000000000000000000
..................GACTACGAGCTGCTGACAGTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
..............GAATGACTACGAGCTGCTGACAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000010000000000000000000000000000000000000000000000000000
................ATGACTACGAGCTGCTGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000001
............GAGAATGACTACGAGCTGCTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000000000000000000000000000000000000000000000000000000000000
..................GACTACGAGCTGCTGACAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000000000000000000000000000000000000000000000000000000000000
..........ATGAGAATGACTACGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000100000000000000000000000000000000000000000000
............GAGAATGACTACGAGCTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000100000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAGATAGACGCACGT.............1911.001000000000001000000000000000000000000000000000000000000000000000
......AACTATGAGAATGACTACGAGCTGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
..CGAGAACTATGAGAATGACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000010000000000000000000000000000000000000000000000000
.....................TACGAGCTGCTGACAGTCAACAATTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
droMoj3
TTT-------------------------------------------ATATGCAATTTCTATCTC-------T-----------T--------ATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTA--CC--------TTCTCTCTCT----CTC--------------TCTC-------------TTCCTCTTCACT-------------------------TCCACACGTAGTATGAGCTTTGATTACGAAAACAGGTAAGCAACTC--------------------------------------------------------------------------ACTCA--GGGTCCCCATTAGCATCCTAGACTAAA-----CT-A--ATTTCTCA---------------------TTTAAGGACCTTCGAGACATGGAGCTCCAAGATTGATGCACGCCACAATTACTGGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAAA-----CT-A--ATTTCTCA---------------------TTTAAG..................................................2311.001000010
droGri2
AAT--------------------------------------------------------TCAATTTCTATTC-------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATACTAAAATGAGAA----------CTGTATA---------------------------------ACTTC---------AAGAATATCTACAT--------TTT---------ATTTTGCACAGCGT------------------------AATTATGATCCCATTTATATTAAATA-TTCT-----------------------------------------------------------------------------TTTCT-----------ACTCTCTTTT-CTC---------TACTCCACT--CTCTTGCTCTCTCCCACTTCCTC-------------------------AACGCACCTAGTATGAGCTTTGATTATGAAAACAGGTAAGGTGAATGC----------------TCCATTCTATCCATA------------------------------------------AGAAAA--G------------TCG-AATTAATCTA---T---ATTTTTCTCCAACTTCGCCATCGCCATATTACTCAAGGACCTTTGAAACGTGGAGCTCCAAGATAGATGCTCGACACAATTATTGGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 11:04 AM