ID:

dsi_20398

 Coordinate:

3l:15727187-15727336 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-13.8 -13.8 -13.7

Flybase annnotation

CDS [3l_15727337_15727498_+]; exon [3l_15727337_15727498_+]; intron [3l_15726535_15727336_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCCTTCAAATTTGGTTAGCACAGAGAGAATCAAATCTGCACTAATTGGGGTCCTTTGCCGAGCGATTAAGTCAACTGCTGCATGATGTAGGCTAATTTAGAATCCCGCAAAACCTTTCAATGCATCCTCTGGTCCAAATAGACTTTGAAAATGTGATGAGATGAATTGATAGACTAATGATAATGTTGCGTATTTGCCAGGCCGGTCAACCGCTGCTCAACTCAATGCTGCCGGCAGGCGTGGTGGTGGG
******************************************************************(((((...((((........))))....)))))...............(((((.(((((..((.((((......))))..))..))))).))))).......********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M023
head
 GSM343915
embryo
....................................................................................................AATGGCGCAAAACCTTTCA................................................................................................................................... 19 2 4 3.50 14 14 0 0 0 0 0 0 0 0
........GTTTGGTTAACACAGAGAGA.............................................................................................................................................................................................................................. 20 2 1 2.00 2 0 2 0 0 0 0 0 0 0
...............................................................................................................................................................................................ATTCGACAGGCCGATCAACCG...................................... 21 3 1 2.00 2 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CAACCGCTGCTCAACTCAATGCC..................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................TGAGATGAATTGATAGACTAATGATGAT.................................................................. 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................CTTTGAAAATGTGATGAGATGAATTG.................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.......................................................................................................................................AAATAGACTTTGAAAATGTGATGAG.......................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................GAATGGCGCAAAACCTTTCAA.................................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................TAAGTCAACTGCTGCATGATGTAGGC.............................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................CAAATAGACTTTGAAAATGTGATGAGA......................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
............................................................................................................................................................TGAGATGAATTGATAGACTAATGATAAT.................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................AAAATGTGATGAGATGAATT................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.....................................................................................................ATGGCGCAAAACCTTTCA................................................................................................................................... 18 2 9 0.56 5 5 0 0 0 0 0 0 0 0
...........TGGTTAACACAGAGAGA.............................................................................................................................................................................................................................. 17 1 2 0.50 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................GATGAATTCATAGTCTAGT........................................................................ 19 3 19 0.42 8 0 0 0 6 0 0 0 2 0
............................................................................................TAATTCAGAATCCCGC.............................................................................................................................................. 16 1 5 0.20 1 0 0 0 0 0 0 1 0 0
....................................................................................................AATGGCGCAAAACCTTTCGA.................................................................................................................................. 20 3 15 0.20 3 3 0 0 0 0 0 0 0 0
....................................................................................................AATGCCGCAAAACCTTTCG................................................................................................................................... 19 2 5 0.20 1 1 0 0 0 0 0 0 0 0
...........................................................................................CTAAGTTAGAATCCCGT.............................................................................................................................................. 17 2 16 0.19 3 0 0 3 0 0 0 0 0 0
..........TTGGTTAACACAGAGA................................................................................................................................................................................................................................ 16 1 6 0.17 1 0 0 0 0 0 1 0 0 0
...........................................................................................CTAAGTTAGAATCCCG............................................................................................................................................... 16 1 7 0.14 1 0 0 1 0 0 0 0 0 0
...........TGGTTAACACAGAGA................................................................................................................................................................................................................................ 15 1 11 0.09 1 0 0 0 0 0 1 0 0 0
....................................................................................................AATTGCGCAAAACCTTTC.................................................................................................................................... 18 2 16 0.06 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................TGTGTTGAGATGAAATTATA............................................................................... 20 3 17 0.06 1 0 0 0 0 0 1 0 0 0
....................................................................................................AATGGCGCAAAACCTTTCAT.................................................................................................................................. 20 3 19 0.05 1 1 0 0 0 0 0 0 0 0
................................................GGTCCTTTGCTGATAGATT....................................................................................................................................................................................... 19 3 19 0.05 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GTCGGCAGGCGTGGTGGAA.. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................AGGCCCGTAAACCGCT.................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

CGGAAGTTTAAACCAATCGTGTCTCTCTTAGTTTAGACGTGATTAACCCCAGGAAACGGCTCGCTAATTCAGTTGACGACGTACTACATCCGATTAAATCTTAGGGCGTTTTGGAAAGTTACGTAGGAGACCAGGTTTATCTGAAACTTTTACACTACTCTACTTAACTATCTGATTACTATTACAACGCATAAACGGTCCGGCCAGTTGGCGACGAGTTGAGTTACGACGGCCGTCCGCACCACCACCC
**********************************************************************************(((((...((((........))))....)))))...............(((((.(((((..((.((((......))))..))..))))).))))).......****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
...................................................................................................CTTACCGCGTTTTGGAAAG.................................................................................................................................... 19 2 5 1.40 7 7 0 0 0 0 0
...............................................................................................AAAGCTTACCGCGTTTTGGAAAG.................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0
............CCAATTGTGTCTCTCTAA............................................................................................................................................................................................................................ 18 2 3 0.33 1 0 1 0 0 0 0
...............ATGGTTTCTCTCTTAGTTTA....................................................................................................................................................................................................................... 20 2 3 0.33 1 0 1 0 0 0 0
...........ACCACGCGTGTCTCTCTAAGTT......................................................................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 1 0 0
...................................................................................................................................CAGGTTGATCTGATACTT..................................................................................................... 18 2 4 0.25 1 0 0 1 0 0 0
.................................................................................................ATATTACCGCGTTTTGGAAAG.................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0
...........ACCAATTGTGTCTCTCTAATT.......................................................................................................................................................................................................................... 21 3 5 0.20 1 0 1 0 0 0 0
...............................................CCCAGTAAACGGCTC............................................................................................................................................................................................ 15 1 7 0.14 1 0 0 0 0 1 0
......................................................................................................................................................................................................................CGAGTTGAATTACGACCG.................. 18 2 7 0.14 1 0 0 1 0 0 0
........................................................................................................................................................................................................CGGCCAGCTGGCGAC................................... 15 1 7 0.14 1 0 1 0 0 0 0
....................................................................................................................................AGGTTTATCTGATACTTA.................................................................................................... 18 2 12 0.08 1 0 0 1 0 0 0
.......................................................................................................TGGCGTTTTGGAAAG.................................................................................................................................... 15 1 15 0.07 1 1 0 0 0 0 0
........................................................................................................................................................................................................CGGCCAGTTGGGAACGACT............................... 19 3 16 0.06 1 1 0 0 0 0 0
............CCACTCGAGTCTCTCTAAG........................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0
..................................................................................................................................................................................................CCGGTCAGGCCAATTGGC...................................... 18 3 20 0.05 1 0 0 0 0 0 1

Generated: 04/23/2015 at 07:24 PM