ID:dsi_20397 |
Coordinate:3l:7947995-7948279 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -82.9 | -82.8 | -82.7 |
 |
 |
 |
exon [3l_7947861_7947994_-]; CDS [3l_7947861_7947994_-]; CDS [3l_7948280_7948394_-]; exon [3l_7948280_7948394_-]; intron [3l_7947995_7948279_-]
No Repeatable elements found
| ##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GCGAGGGGCTGCACGACGGCTTCTATGCCTCCATCGAGTACAAGTGTCAGGTGAGCTTGCCGGCATGACCTTGTCTGGGCAACAACGACGTAACATAATTGGTCATCATGCCTAGACAAACCGAGCACAAGCCAAGCGCAACCCAACCCAACCCAATCCCTCTGTGCCTGGCCAGCAATTTCTCTTTTTCAACTGGCGACGTGACGCCAAAAACTAAAACTTGTTTGCGCCTCGATCTTGACCTCAAAAGCGGGCAAGAAGAAGCGCTAAACGATGGCTAACAGAGCGAATTAGTTATGGCCAAATGTGATTAACCAGAGTTGGACTCGTTGCAGATCTATCACCACTGCGTCTATGGCATAAGACACGACTTTCTGTGCGCCAA **************************************************.((.(((((...((.((...(((((((((((.....(((............)))....)))))))))))..)).)).)))))))...(((((.....(((((....((.((((((...((((((...................(((((......)))))...........((((((((((.((..(((((.(((.......)))))))).)).)))).)))))))))))))))))).)).(((((((((......))))))))).....)))))....)))))..************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M025 embryo |
SRR553486 Makindu_3 day-old ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
M053 female body |
M024 male body |
SRR618934 dsim w501 ovaries |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................................................................................................................................................................................................................................................................AACCAGAGTTGGACTCGTTGC.................................................... | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................CATAAGTGGTCATCATGCA................................................................................................................................................................................................................................................................................. | 19 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................................................................................................................................................................................................................................TGCGTCAATGGCAGAAGGCAC................. | 21 | 3 | 2 | 0.50 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................................................TAGATCTTGACCTGAAATGC...................................................................................................................................... | 20 | 3 | 3 | 0.33 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................................................CGACACGATCTTGACCTC............................................................................................................................................ | 18 | 2 | 6 | 0.17 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .....................................................................................................................................................................................................................................................................ACGCGGTAAACGATGGATA......................................................................................................... | 19 | 3 | 8 | 0.13 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................................................................................GCCCTAAACGATGGGTA......................................................................................................... | 17 | 2 | 9 | 0.11 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| .............................................................................................CACAATTGGTCATCGCGCC................................................................................................................................................................................................................................................................................. | 19 | 3 | 12 | 0.08 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ..GAGGGGCTGCACGCGCGCT............................................................................................................................................................................................................................................................................................................................................................................ | 19 | 3 | 14 | 0.07 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| .....................................................................................................................................................................................................................................................................ACGCCCTAAACGATGTCTA......................................................................................................... | 19 | 3 | 15 | 0.07 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...................................................................ACCTTGTCGGGGCACCA............................................................................................................................................................................................................................................................................................................. | 17 | 2 | 15 | 0.07 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..........................................................................................................................................................................................................................................................................GTAGACGATGGGTAACAG..................................................................................................... | 18 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ................................................ATGTGAGCTTGCCGGA................................................................................................................................................................................................................................................................................................................................. | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
|
CGCTCCCCGACGTGCTGCCGAAGATACGGAGGTAGCTCATGTTCACAGTCCACTCGAACGGCCGTACTGGAACAGACCCGTTGTTGCTGCATTGTATTAACCAGTAGTACGGATCTGTTTGGCTCGTGTTCGGTTCGCGTTGGGTTGGGTTGGGTTAGGGAGACACGGACCGGTCGTTAAAGAGAAAAAGTTGACCGCTGCACTGCGGTTTTTGATTTTGAACAAACGCGGAGCTAGAACTGGAGTTTTCGCCCGTTCTTCTTCGCGATTTGCTACCGATTGTCTCGCTTAATCAATACCGGTTTACACTAATTGGTCTCAACCTGAGCAACGTCTAGATAGTGGTGACGCAGATACCGTATTCTGTGCTGAAAGACACGCGGTT
**************************************************.((.(((((...((.((...(((((((((((.....(((............)))....)))))))))))..)).)).)))))))...(((((.....(((((....((.((((((...((((((...................(((((......)))))...........((((((((((.((..(((((.(((.......)))))))).)).)))).)))))))))))))))))).)).(((((((((......))))))))).....)))))....)))))..************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR618934 dsim w501 ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
SRR553488 RT_0-2 hours eggs |
M053 female body |
SRR553486 Makindu_3 day-old ovaries |
GSM343915 embryo |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................................GTAGTACGGATCTGTTTGGCTCGTCT................................................................................................................................................................................................................................................................ | 26 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................................................................................................TGTCTCGTTTAATCAATA....................................................................................... | 18 | 1 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................................................................................................CGGAGCTAGAAGTGGA............................................................................................................................................. | 16 | 1 | 5 | 0.20 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ....CCCCGAAATGCTGCCGA............................................................................................................................................................................................................................................................................................................................................................................ | 17 | 2 | 8 | 0.13 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................CGGCGGTAGCTCATG........................................................................................................................................................................................................................................................................................................................................................ | 15 | 1 | 9 | 0.11 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................GGATCTGCTTGGCTGG................................................................................................................................................................................................................................................................... | 16 | 2 | 20 | 0.10 | 2 | 0 | 0 | 1 | 0 | 0 | 1 | 0 |
| .........................................................................................................................................................................................AAAAATTGAACGCTGCAC...................................................................................................................................................................................... | 18 | 2 | 12 | 0.08 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| .........................................................................AGCCCCGTTGTTGCT......................................................................................................................................................................................................................................................................................................... | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ................................................................................................................................................TTGGGGTGGGCTAGGGATA.............................................................................................................................................................................................................................. | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ....................................................................................................................................................GGTAGTTTAGGGAGACACG.......................................................................................................................................................................................................................... | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
Generated: 04/24/2015 at 10:36 AM