dsi_20393

five_prime_UTR [2l_20546424_20546511_+]; exon [2l_20546424_20546919_+]; intron [2l_20540042_20546423_+]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AAGATAAATATAAATGCGTGATTTAATGGGGTATATATGGATTTCGGCCAGAAGGCTTCATGGCAAGTAAAATCCGTGGGCTTTAACCAGTTTCAATTGGTTATTGTGGCAGGTCGGTCGACTTGAAGAGTGATAGTACAAAAAAGGCAAGATTAACTTAACAAAATTGACTTACTCCTTTCTTTTTTCTCTTCTGGCAGGTGAAGAAACATAGCAGCTGAAAGGAACCTGCCTGAGTAGAAGTACGTTG *********************************((((..((((((((((((((..((((((..........))))))((..((((((((....))))))))..))..((((((....))))))..(((((..(((.(((.......(((.....))).......)))))))))))............)))))))))...)))))...))))..*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M025 embryo	M053 female body	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
.............................................................................................................................................................................................................GAAACATAGCAGCTGAAAGGAACC.....................	24	0	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................GCTGAAAGGAACCTGCCTGA..............	20	0	1	1.00	1	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................AGCTGAAAGGAACCTGCCTGAGG............	23	1	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................GCAGGTCGGTCGACTTGA............................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................AGCTGAAAGGAACCTGCCTGAGTA...........	24	0	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................ATAGCAGCTGAAAGGAACCC....................	20	1	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................AGCTGAAAGGAACCTGCCT................	19	0	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................CATAGCAGCTGAAAGGAACC.....................	20	0	1	1.00	1	0	1	0	0	0	0	0
...............................................................................................................................................................................................................AACATAGCAGCTGAAAGGAACCT....................	23	0	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................................AACGTGAAGAAACATAGCAGCTG..............................	23	2	1	1.00	1	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................AGGAACCTGCCTGAGTAGA.........	19	0	1	1.00	1	0	0	1	0	0	0	0
..................................................................................................................................................GCAAGATTAACTTAGCA.......................................................................................	17	1	1	1.00	1	0	0	0	1	0	0	0
...............................................................................................................................................................................................................AACATAGCAGCTGAAAGGAACCTGCCT................	27	0	1	1.00	1	1	0	0	0	0	0	0
..........................TGGGGTATCTATGGATTACGA...........................................................................................................................................................................................................	21	3	2	0.50	1	0	0	0	1	0	0	0
.......................................................................................................................GACTTGAGGAGAGATA...................................................................................................................	16	2	20	0.10	2	0	0	0	2	0	0	0
.................................................................................................................................................................................................................CATAGCAGCTGCAAG..........................	15	1	11	0.09	1	0	0	0	1	0	0	0
................................................CAAAAGGCTTCATGGGA.........................................................................................................................................................................................	17	2	13	0.08	1	0	0	0	0	1	0	0
...............................................................................................................................GACCGATAGTAAAAAAAAGG.......................................................................................................	20	3	14	0.07	1	0	0	0	0	0	1	0
...........................................................................................................................................AAAAAAGGCTAGATT................................................................................................	15	1	20	0.05	1	0	0	0	0	0	0	1

TTCTATTTATATTTACGCACTAAATTACCCCATATATACCTAAAGCCGGTCTTCCGAAGTACCGTTCATTTTAGGCACCCGAAATTGGTCAAAGTTAACCAATAACACCGTCCAGCCAGCTGAACTTCTCACTATCATGTTTTTTCCGTTCTAATTGAATTGTTTTAACTGAATGAGGAAAGAAAAAAGAGAAGACCGTCCACTTCTTTGTATCGTCGACTTTCCTTGGACGGACTCATCTTCATGCAAC *********************************((((..((((((((((((((..((((((..........))))))((..((((((((....))))))))..))..((((((....))))))..(((((..(((.(((.......(((.....))).......)))))))))))............)))))))))...)))))...))))..*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	M053 female body
................................................................................................................................................................................GGAAAGAAAAAGGAGACGATCGT...................................................	23	3	2	0.50	1	1	0	0	0
...........................................................................................................................................................................AGTGAGTAAAGAAAAAAGAGAT.........................................................	22	3	7	0.14	1	1	0	0	0
......................................CCTAAAGCCGCTCTCCCG..................................................................................................................................................................................................	18	2	9	0.11	1	0	1	0	0
......................................................................................................................................................................................AAAAAAGAGGAGACCGTCT.................................................	19	2	11	0.09	1	0	0	1	0
............................................................................................................CTTCGAGCAAGCTGAACTT...........................................................................................................................	19	3	17	0.06	1	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2l:20546224-20546473 +	dsi_20393	AAGATAAAT-ATAAATGCGTGATTTAATGG-GGTAT--ATAT------------------GGATTTCGG------C--------------------------------------------CAGAAGGCTTCATGGCAAGTAAAATCCGTGGGCTTTAACCAGTTTCAATTGGTTATTGTGGCAGGTCGGTCGACTT------------GAAGAGTGATAGTACAA-A-A----AAGG-C-----AAGATTAACTTAA----------------------CAAAATTGACTTACTC-CTTTCT--TTTTTCTCTTCTGGCAGGTGA----------AGAA----------------------------------------------------ACATAGCAGCTGAA------AGGAAC-----------------------------CTGCCTGAGTA-----------GAAG-----TACGTTG--
droSec2	scaffold_18:1032739-1032988 +		AAGATAAAT-ATAAATGCGTGATTTAATGG-GGTAT--ATAT------------------GGATTTCGG------C--------------------------------------------CAGAAGGCTTCATGGCAAGTGAAATCCGTGGGTTTTAACCAGTTTCAATTGGTTATTGTGGCAGGTCGGTCGACTT------------GAAGAGTGATAGTACAA-A-A----AAGG-C-----AAGATTAACTTAA----------------------CAAAATTGACTTACTC-CTTTCT--TTTTTCTCTTTTGGCAGGTGA----------AGAA----------------------------------------------------ACATAGCAGCTGAA------AGGAAC-----------------------------CTGCCTGAGTA-----------GAAG-----TACGTTG--
dm3	chr2L:21114388-21114643 +		AAGATAAAT-ATAAATGCGTGATTTAATGG-AGTAA--ATAT------------------GGATTTCGG------C--------------------------------------------CAGAAGGCTTCATGGCTAGTTAAATCCGTGGGTTTTAACCAGTTTCAATTGGTTATTGCGGCAGGTCGGTCGACTT------------GAAGAGTGATAGTAATAAA-----AAAGG-C-----AAGATGAACTTAAACATGAA---------------CAAAATTGACTTACTC-TTTTCT--CTTT--TCTCCTGGCAGGTGA----------AGAA----------------------------------------------------ACATAGCAGCTGAA------AGGAAC-----------------------------CTGGCTGAGTA-----------GAAG-----TACGTTG--
droEre2	scaffold_4845:3378434-3378697 -		AAGATAAAT-ATAAATGCGTGATTTAATGG-AGTAT--ATGTGGACTATATAGTATATATGGATTTCGG------C--------------------------------------------CAGAAGGCTTCATGGTTAGTGAAATCCGTGGGTTTTAACCAGTTTCAGTTGGTTATTGTGGCAGGTCGGTCGACTT------------GAAGAGTGATAGTGATA-A-GAATTAAGG-C-----A-GATAAACTTAT----------------------CGAAACTGGTGTACTC-TT---------T--TATCCTTTTAGGTAA----------AGAA----------------------------------------------------ACATAACAGCTGAAAA----AGGAAC-----------------------------CTGACTAAGTA-----------GAAG-----TACGTTG--
droYak3	2R:1654691-1654931 -		TAGATAAAT-ATAAATGCGTGATTTAATGG-AGTAT--ATAT------------------GGATTTTGG------C--------------------------------------------CAGAAGGCTTCATGGCCAGTGAAATTCGTGGGTTTTAACCAGTTTCAATTGGTTATTGTGGCAGGTCGGTCGACTT------------GAAGAGTGATAGCAATA-A-AAAGGAAGG-C-----AAGATAAACTTAT----------------------TAAAATTGA-TTACTC-T-------TTTT--TCTCCTTGCAGGTCA----------AGAA----------------------------------------------------ACATTACAGCTGAAAA----AGGAAC-----------------------------CTGGCTAAGTA-----------GCA----------T----
droEug1	scf7180000409767:196135-196395 -		AGAATAAAT-ATAAATGTGCGATTTTATGA-GGTAT--AAAT------------------GGCTATTGG------C--------------------------------------------CAGAAGGCTTCATGGTTAGTGAAATTCGTGGGTTTTAACCAGTTTCGATTGGTTATTGCGGCAGGTCGGTCGATCT------C---ATTCCCAGTGATAATAAAC-A-A---AAAATCTCAGTTA---CCAG-TTGC----------------------TAATA-----------TCTATTTACTCTC--TCTCCTTGCAGTTAA----------CACAAAA-C----AAGAACTAACAAC----------------------------------CATAACTAAAAA----GGTAAA-----------------------------CTGGCTAAGTA-----------GAAG-----GACATTA--
droBia1	scf7180000302422:6989046-6989280 -		A--ATAAAT-ATAAATATGCGATTTAATGG-AGTAT--ATCT------------------GGATTTTGG------C--------------------------------------------CAGAAGTCTTCATGGTTGGTAAGGTCCGTGGGTTTTAACCAGTTTCGATTGGTTATTGGTGCAGGTCGGTCGACTT------------GAAGAGTGCTAATAACAAC-----AAATG-T-----AAAACGAATTAAC----------------------TTATA-----------TTTGTTT--ACTCTCTCTCCTTGCAGTTAA----------AAAAG---------A-----------------------------------------GGGCAGCAACTAAGA-----A------------------------------------GGCCAAGTA-----------GAAG-----GACATCA--
droTak1	scf7180000415708:336709-336939 -		AGAATAAAT-ATAAATGTGCGATTTT---------------T------------------AGATTTTGG------C--------------------------------------------CAGAAGGCTTCATGGTTGGTCCATTCCGTTGGATTTAACCAGTTTCGATTGGTTATTGCGGCAGGTCGGTCGACTT------------GAACAGTGATATTAAAA-A-G----AAGG-C-----TCGATGATTTCAC----------------------TAACA-----------CTTATTT--A--C--TTTCATTGCAGTTAA----------CAAAAAC-C----AA-----------------------------------------GCACATCAACTTAAA-----AGGAAA-----------------------------CTGGCCAAGTA-----------GAAG-----GACACTA--
droEle1	scf7180000491186:1152260-1152501 +		AGAATCAAT-ATAAATGTGCGATTTTTTGC-AATAT--ATCT------------------GGATTTTAT------C--------------------------------------------CCGAAGTCTTCATGGTTAGTGAAATTTGTGGGCTTTAACCAGTTTCAATTGGTTATTGCGGCAGGTCGGTCGATTT------------TGGCAGTGATAATAAAA-A-A--GGAAGG-C-----AAGCCAAATATAC----------------------TAATA-----------TTTATTT--ACCA--TCTCATTGCAGTTAA----------CTAA----------------------------------------------------TCACAGCAATTAACGT----TAGAAA-----------------------------CTGGCATAGTA-----------GAAG-----GACATTA--
droRho1	scf7180000771933:31835-32079 +		AAAACAAAT-AAAAATGTGAGATTTTATGT-GGTAT--ATAT------------------GGATTCTGT------C--------------------------------------------CAGAAGTCTTCATGGTTAGTGAAATTTGTGGCTTTTAACCAGTTTCAATTGGTTATTGCGGCAGGTCGGTCGATTT------------TGGAAGTGATACTAAAA-A-A----AAGG-C-----AAGCCGAATGTAC----------------------TGATA---ATATAT--TCTGCTT--ATTT--TCTCCTTGCAGTTAA----------CCAA----------------------------------------------------ACACAGTAACTAAGA-----AGGAAA-----------------------------CTGGCTTAGTA-----------GACG-----GACATAA--
droFic1	scf7180000453842:593571-593818 +		GGAATAAAT-ATAAATGTGCGATTTTATGG-CGTAT--ATAT------------------GG-TTTTGG------C--------------------------------------------CAGAAGTCTTCATGGTTAGTGAGGTTCGTGGGTTTTAACCAGTTTCGATTGGTTATTGTGGCAGGTCGGTCGACCCCC----------AGAGAGTGATGATAAAA-AT----AAAGT-C-----AAAAAGAGTTTAC----------------------TTATA-TGA--TACTA-CTTTTT--CCTC--TCTCCTTGCAGTTAA----------CAAA----------------------------------------------------ACAGAGCTACTAAAA-----AGCTGA-----------------------------CTGGCTTAGTA-----------GAAG-----GACATTA--
droKik1	scf7180000302643:149766-150033 +		AAAACAAAT-ATAAACGTGTGATTTTTCGT-TGAATGGGTCT------------------GGTTTTTGA-T----C--------------------------------------------CAGAAGTCTTCAAGCTCAGTTAAATTCGTGGGTTTTAACCAGTTTCAATTGGTTATTGCGGCAGGTCGGTCGAGTG-----AG---AGGCGCTGTGTTAAAAAAA-AT----CAAGT-C-----AAAAA----T-------CGAAAATA--------AACATTA-----------TTTTTAA--ACTC--TTTCCTTGCAGAGAT---------ACCC-AACCA----AAGAGCAAACCGG-------------------------------AATAGAAAGGAA-------GAGAAA-------------C---------------TAACCACAATA-----------GAAG-----GACACTAAC
droAna3	scaffold_12943:3625596-3625907 -	dan_4041	AGAACAAAT-ATTAAGGTGTGATTTTTTGAATGAAC--GGGTGGACTGGTGGACTTTAACGGTTTCCC--------------------------AGAC---------------GC-----CAGAAGGCTTCATGGTCGGTAAGATTTGTGGGTTTTAACCAGTTTCAATCGGTTATTGCGGCAGGTCGGTCGAGTA------------AGGGAGTGATAACAAAA-AT----TCAGT-C-----AA-GTCCATTAAC----------------------CAATA-----------TTTGTTA--ACTC--TTTCCTTGCAGATAT---------ACTA-AACCACAAAGAGA---AGTAACCAAAAAAAAAAGAGTAAATCATAGCCAGAC----------AGAAGGACAGAAGAAA-----------------------------CTGCCTGAAGAA----------AAAGGATAATAGGAAG--
droBip1	scf7180000396433:509861-510135 -		AGAACAAAT-ATTAAAGTGTGATTTTTTGT--GAAT--GGCTGGACT--------TTTACGATTTTAAG---------------------------AC---------------CA-----CAGAAGGCTTCATGGTTAGTGAAATTGGTGGGATTTAACCAGTTTCAATTGGTTATTGCGGCAGGTCGGTCGAGTA------------AGGGAGTGATAACAAAA-AT----TAAGT-C-----AAGACCAA-TAAC----------------------CAATA-----------TTTGTTA--ACTC--TTTCCTTGCAGATACCAAACGGATACTA-ACCCAAAAAAACAAAAAAGAATAAC-----------------A--GACAGAC----------AGGAGA----AGGAAT-----------------------------CTGCCTGAGAA-----------AA----------------
dp5	4_group1:4971406-4971733 -	dps_3834	AAGTCGATCGATTAAAGTGTGAATTATGG----------CAT------------------GGATTTTCGACTGAGTAAACACCAATAGATCTACAGATGATCTGTATGATGATGC-----ACCCAGTCTTCTTGGTTAGTGAAATGTGTGGGTTTAATCCAGTTTCGATTGGTTATTGTGGAAGGTCGGTCGACCGGCGTGTG---TAAGGGAGTGATAACAAAA-AT----TAAGA-A-----AAAAT------------CCAAAAAA----ATAATTCAATA-----------TTTGTTA--ACTC--TTTCCTTGCAGAAA--------------------------------------------------------------------CTAAGCGAACAAGA-----AGGAGGCTTTAAGGAGTAACCAAGAACCTATGCCTATGCCTATGGAGTAGCCCAATTGAGC-----CACGAAG--
droPer2	scaffold_5:245679-245994 +	dpe_116	AAGTCGATCGATTAAAGTGTGAATTATGG----------CAT------------------GGATTTTCGACTGAGTAAACACCAATAGATCTACAGATGATCTGTA-GATGATGC-----ACACAGTCTTCATGGTTAGTGAAATGTGTGGGTTCAATCCAGTTTCGATTGGTTATTGTGGAAGGTCGGTCGACCGGCGTGTG---TAAGGGAGTGATAACAAAA-AT----TAAGA-A-----AAAAT------------CCAAAAAA----ATAATTCAATA-----------TTTGTTA--ACTC--TTTCCTTGCAGAAA--------------------------------------------------------------------CTAAGCGAACAAGA-----AGGAGGCTTTAAGGAGTAACCAAGAACCTATGCCTATGCCTATGGA-----------GTAG-----CCCAATT--
droWil2	scf2_1100000004585:4878948-4879262 -	dwi_5418	TTGATTTAT-GTAATTATTATTTTC------------------------------------G-ATTTGG------CTAACT-----AAGTC---ATAC---------------CATAGAAAAAAAGTCTTCAAATTGAGTGAAATTTCTGGAATTTAACCAGTTTCAATTGGTTATTGTGGCAGGTCGGTCGATTAACCACAGTGGTATGGAAGAGATAGCAAAA-AG--------------------TTCAATTAAAAATGTACAATCTTGACTAAATCAACA-----------TTTGTTA--ACTC--CTTCCCTACAGGACACAACTGAACATAA-CCGCAGAAATAGCAACAACTACAAC-----------------AACTACAAAG----------AGGAGG----AGATAACTACAAGGC------------------AAATGTCCGAATC-----------GATA-----GGCCAGG--
droVir3	scaffold_13246:2198397-2198464 -		A----------------------------------------------------------------------------------------------------------------------------GTTTTCATGCTAAGTGAATTTACTGGATATTAACCAGTTTCCGTTGGTTATTGCGGCAGGTCGGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6500:26320843-26320913 -		--------------------------------------------------------------------------------------------------------------------------GAAGTTTTCATGCTAAGTGAATTTACTGGGATTTAACCAGTTTAAGTTGGTTATTGCGGCAGGTCGGTCGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15126:3759858-3759932 +		--------------------------------------------------------------------------------------------------------------------------GGAGTCTACAAGCCAAGTGAATTTTCTGGATCTTAACCAGTTTCCGTTGGTTATTGTGGCAGGTCGGTCGT--T------------GAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AAGATAAAT-ATAAATGCGTGATTTAATGG-GGTAT--ATAT------------------GGATTTCGG------C--------------------------------------------CAGAAGGCTTCATGGCAAGTAAAATCCGTGGGCTTTAACCAGTTTCAATTGGTTATTGTGGCAGGTCGGTCGACTT------------GAAGAGTGATAGTACAA-A-A----AAGG-C-----AAGATTAACTTAA----------------------CAAAATTGACTTACTC-CTTTCT--TTTTTCTCTTCTGGCAGGTGA----------AGAA----------------------------------------------------ACATAGCAGCTGAA------AGGAAC-----------------------------CTGCCTGAGTA-----------GAAG-----TACGTTG--	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
................................................................................................................................................................................................................................................................................................................................................GAA----------------------------------------------------ACATAGCAGCTGAA------AGGAAC-----------------------------C.......................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GCTGAA------AGGAAC-----------------------------CTGCCTGA................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................AGCTGAA------AGGAAC-----------------------------CTGCCTGAGG..............................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................GCAGGTCGGTCGACTT------------GA....................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................AGCTGAA------AGGAAC-----------------------------CTGCCTGAGTA-----------..................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................ATAGCAGCTGAA------AGGAAC-----------------------------CC......................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................AGCTGAA------AGGAAC-----------------------------CTGCCT..................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................CATAGCAGCTGAA------AGGAAC-----------------------------C.......................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------ACATAGCAGCTGAA------AGGAAC-----------------------------CT......................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAC-----------------------------CTGCCTGAGTA-----------GA................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------ACATAGCAGCTGAA------AGGAAC-----------------------------CTGCCT..................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AAGATAAAT-ATAAATGCGTGATTTAATGG-GGTAT--ATAT------------------GGATTTCGG------C--------------------------------------------CAGAAGGCTTCATGGCAAGTGAAATCCGTGGGTTTTAACCAGTTTCAATTGGTTATTGTGGCAGGTCGGTCGACTT------------GAAGAGTGATAGTACAA-A-A----AAGG-C-----AAGATTAACTTAA----------------------CAAAATTGACTTACTC-CTTTCT--TTTTTCTCTTTTGGCAGGTGA----------AGAA----------------------------------------------------ACATAGCAGCTGAA------AGGAAC-----------------------------CTGCCTGAGTA-----------GAAG-----TACGTTG--	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...............................................................................................................................................................................................................................................................................................................................................................................................................GCTGAA------AGGAAC-----------------------------CTGCCTGAGT..............................	22	1	1.00	1	0	1	0	0
........................................................................................................................................................................................GTCGGTCGACTT------------GAAGAGTGAT............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................ACATAGCAGCTGAA------AGGA.......................................................................	18	1	1.00	1	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................CTGAA------AGGAAC-----------------------------CTGCCTGAGTA-----------GAA...............	25	1	1.00	1	1	0	0	0

dm3

AAGATAAAT-ATAAATGCGTGATTTAATGG-AGTAA--ATAT------------------GGATTTCGG------C--------------------------------------------CAGAAGGCTTCATGGCTAGTTAAATCCGTGGGTTTTAACCAGTTTCAATTGGTTATTGCGGCAGGTCGGTCGACTT------------GAAGAGTGATAGTAATAAA-----AAAGG-C-----AAGATGAACTTAAACATGAA---------------CAAAATTGACTTACTC-TTTTCT--CTTT--TCTCCTGGCAGGTGA----------AGAA----------------------------------------------------ACATAGCAGCTGAA------AGGAAC-----------------------------CTGGCTGAGTA-----------GAAG-----TACGTTG--	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................................................................................................................................................................AGATGAACTTAAACATGAA---------------CA.............................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGAA------AGGAAC-----------------------------CTGGCTGAG...............................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................CAGTTTCAATTGGTTATTGCGGCAGG.............................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................TAGCAGCTGAA------AGGAAC-----------------------------CTGG....................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................C-----AAGATGAACTTAAACATG................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................CATAGCAGCTGAA------AGGAAC-----------------------------CTGGCTGA................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TGCGTGATTTAATGG-AGTAA--A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------------------------CTGGCTGAGTA-----------GAAG-----TACGTTG--	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................GAA------AGGAAC-----------------------------CTGGCTGAGT..............................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................AA----------------------------------------------------ACATAGCAGCTGAA------AGGAAC-----------------------------CTGATC..................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AGTTTCAATTGGTTATTGC...................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................ACTT------------GAAGAGTGATAGTAATAAA-----A.............................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TAAATGCGTGATTTAATGG-A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................TAT------------------GGATTTCGG------C--------------------------------------------CAGAAGGCTTCAT.................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TT------------GAAGAGTGATAGTAATAAA-----AAAGG-........................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CGGTCGACTT------------GAAGAGTG..............................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------ACATAGCAGCTGAA------AGGAAC-----------------------------CTGGCT..................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AAGATAAAT-ATAAATGCGTGATTTAATGG-AGTAT--ATGTGGACTATATAGTATATATGGATTTCGG------C--------------------------------------------CAGAAGGCTTCATGGTTAGTGAAATCCGTGGGTTTTAACCAGTTTCAGTTGGTTATTGTGGCAGGTCGGTCGACTT------------GAAGAGTGATAGTGATA-A-GAATTAAGG-C-----A-GATAAACTTAT----------------------CGAAACTGGTGTACTC-TT---------T--TATCCTTTTAGGTAA----------AGAA----------------------------------------------------ACATAACAGCTGAAAA----AGGAAC-----------------------------CTGACTAAGTA-----------GAAG-----TACGTTG--	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------ACATAACAGCTGAAAA----AGGAAC-----------------------------CT......................................	25	1	2.00	2	0	0	0	0	1	1	0
..................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------ACATAACAGCTGAAAA----AGGAAC-----------------------------........................................	23	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................GGAAC-----------------------------CTGACTAAGTA-----------GAAG-----TACGT....	25	1	1.00	1	0	0	0	0	1	0	0
....................GATTTAATGG-AGTAT--ATGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GAAC-----------------------------CTGACTAAGTA-----------GAAG-----TACGT....	24	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................AC-----------------------------CTGACTAAGTA-----------GAAG-----TACGTT...	23	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................ACAGCTGAAAA----AGGAAC-----------------------------CT......................................	19	1	1.00	1	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................AAC-----------------------------CTGACTAAGTA-----------GAAG-----TACGTT...	24	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................AAA----AGGAAC-----------------------------CTGACTAAG...............................	18	1	1.00	1	0	0	0	0	1	0	0
............................................................GGATTTCGG------C--------------------------------------------CAGAAGGCTTCATG................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................GAAAA----AGGAAC-----------------------------CTGACTAAGT..............................	21	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................GTAA----------AGAA----------------------------------------------------ACATAACAGCTGA..................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................ATTAAGG-C-----A-GATAAACTT.......................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0

droYak3

TAGATAAAT-ATAAATGCGTGATTTAATGG-AGTAT--ATAT------------------GGATTTTGG------C--------------------------------------------CAGAAGGCTTCATGGCCAGTGAAATTCGTGGGTTTTAACCAGTTTCAATTGGTTATTGTGGCAGGTCGGTCGACTT------------GAAGAGTGATAGCAATA-A-AAAGGAAGG-C-----AAGATAAACTTAT----------------------TAAAATTGA-TTACTC-T-------TTTT--TCTCCTTGCAGGTCA----------AGAA----------------------------------------------------ACATTACAGCTGAAAA----AGGAAC-----------------------------CTGGCTAAGTA-----------GCA----------T----	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................GAAAA----AGGAAC-----------------------------CTGGCTAA................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................AA----------------------------------------------------ACATTACAGCTGAAAA----AGGAAC-----------------------------CTGG....................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................GAAAA----AGGAAC-----------------------------CTGGCTAAGTA-----------GC................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................TTCAATTGGTTATTGTGGCAGGTC...........................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

AGAATAAAT-ATAAATGTGCGATTTTATGA-GGTAT--AAAT------------------GGCTATTGG------C--------------------------------------------CAGAAGGCTTCATGGTTAGTGAAATTCGTGGGTTTTAACCAGTTTCGATTGGTTATTGCGGCAGGTCGGTCGATCT------C---ATTCCCAGTGATAATAAAC-A-A---AAAATCTCAGTTA---CCAG-TTGC----------------------TAATA-----------TCTATTTACTCTC--TCTCCTTGCAGTTAA----------CACAAAA-C----AAGAACTAACAAC----------------------------------CATAACTAAAAA----GGTAAA-----------------------------CTGGCTAAGTA-----------GAAG-----GACATTA--	Size	Hit Count	Total Norm	Total
No Reads

droBia1

A--ATAAAT-ATAAATATGCGATTTAATGG-AGTAT--ATCT------------------GGATTTTGG------C--------------------------------------------CAGAAGTCTTCATGGTTGGTAAGGTCCGTGGGTTTTAACCAGTTTCGATTGGTTATTGGTGCAGGTCGGTCGACTT------------GAAGAGTGCTAATAACAAC-----AAATG-T-----AAAACGAATTAAC----------------------TTATA-----------TTTGTTT--ACTCTCTCTCCTTGCAGTTAA----------AAAAG---------A-----------------------------------------GGGCAGCAACTAAGA-----A------------------------------------GGCCAAGTA-----------GAAG-----GACATCA--	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGAATAAAT-ATAAATGTGCGATTTT---------------T------------------AGATTTTGG------C--------------------------------------------CAGAAGGCTTCATGGTTGGTCCATTCCGTTGGATTTAACCAGTTTCGATTGGTTATTGCGGCAGGTCGGTCGACTT------------GAACAGTGATATTAAAA-A-G----AAGG-C-----TCGATGATTTCAC----------------------TAACA-----------CTTATTT--A--C--TTTCATTGCAGTTAA----------CAAAAAC-C----AA-----------------------------------------GCACATCAACTTAAA-----AGGAAA-----------------------------CTGGCCAAGTA-----------GAAG-----GACACTA--	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGAATCAAT-ATAAATGTGCGATTTTTTGC-AATAT--ATCT------------------GGATTTTAT------C--------------------------------------------CCGAAGTCTTCATGGTTAGTGAAATTTGTGGGCTTTAACCAGTTTCAATTGGTTATTGCGGCAGGTCGGTCGATTT------------TGGCAGTGATAATAAAA-A-A--GGAAGG-C-----AAGCCAAATATAC----------------------TAATA-----------TTTATTT--ACCA--TCTCATTGCAGTTAA----------CTAA----------------------------------------------------TCACAGCAATTAACGT----TAGAAA-----------------------------CTGGCATAGTA-----------GAAG-----GACATTA--	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAAACAAAT-AAAAATGTGAGATTTTATGT-GGTAT--ATAT------------------GGATTCTGT------C--------------------------------------------CAGAAGTCTTCATGGTTAGTGAAATTTGTGGCTTTTAACCAGTTTCAATTGGTTATTGCGGCAGGTCGGTCGATTT------------TGGAAGTGATACTAAAA-A-A----AAGG-C-----AAGCCGAATGTAC----------------------TGATA---ATATAT--TCTGCTT--ATTT--TCTCCTTGCAGTTAA----------CCAA----------------------------------------------------ACACAGTAACTAAGA-----AGGAAA-----------------------------CTGGCTTAGTA-----------GACG-----GACATAA--	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGAATAAAT-ATAAATGTGCGATTTTATGG-CGTAT--ATAT------------------GG-TTTTGG------C--------------------------------------------CAGAAGTCTTCATGGTTAGTGAGGTTCGTGGGTTTTAACCAGTTTCGATTGGTTATTGTGGCAGGTCGGTCGACCCCC----------AGAGAGTGATGATAAAA-AT----AAAGT-C-----AAAAAGAGTTTAC----------------------TTATA-TGA--TACTA-CTTTTT--CCTC--TCTCCTTGCAGTTAA----------CAAA----------------------------------------------------ACAGAGCTACTAAAA-----AGCTGA-----------------------------CTGGCTTAGTA-----------GAAG-----GACATTA--	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAAACAAAT-ATAAACGTGTGATTTTTCGT-TGAATGGGTCT------------------GGTTTTTGA-T----C--------------------------------------------CAGAAGTCTTCAAGCTCAGTTAAATTCGTGGGTTTTAACCAGTTTCAATTGGTTATTGCGGCAGGTCGGTCGAGTG-----AG---AGGCGCTGTGTTAAAAAAA-AT----CAAGT-C-----AAAAA----T-------CGAAAATA--------AACATTA-----------TTTTTAA--ACTC--TTTCCTTGCAGAGAT---------ACCC-AACCA----AAGAGCAAACCGG-------------------------------AATAGAAAGGAA-------GAGAAA-------------C---------------TAACCACAATA-----------GAAG-----GACACTAAC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AGAACAAAT-ATTAAGGTGTGATTTTTTGAATGAAC--GGGTGGACTGGTGGACTTTAACGGTTTCCC--------------------------AGAC---------------GC-----CAGAAGGCTTCATGGTCGGTAAGATTTGTGGGTTTTAACCAGTTTCAATCGGTTATTGCGGCAGGTCGGTCGAGTA------------AGGGAGTGATAACAAAA-AT----TCAGT-C-----AA-GTCCATTAAC----------------------CAATA-----------TTTGTTA--ACTC--TTTCCTTGCAGATAT---------ACTA-AACCACAAAGAGA---AGTAACCAAAAAAAAAAGAGTAAATCATAGCCAGAC----------AGAAGGACAGAAGAAA-----------------------------CTGCCTGAAGAA----------AAAGGATAATAGGAAG--	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................................................................................................................................................................................................................................................TTTGTTA--ACTC--TTTCCTTGCAGT....................................................................................................................................................................	23	1	45.00	45	16	25	0	0	4	0
..........................................................................................................................................................................................................................................................................................TA-----------TTTGTTA--ACTC--TTTCCTTGCAG.....................................................................................................................................................................	24	1	32.00	32	18	13	1	0	0	0
.......................................................................................................................................................................................................................................................................................................TTTGTTA--ACTC--TTTCCTTGCAG.....................................................................................................................................................................	22	1	11.00	11	10	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................TA-----------TTTGTTA--ACTC--TTTCCTTGCA......................................................................................................................................................................	23	1	9.00	9	6	3	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TTTGTTA--ACTC--TTTCCTTGCAGC....................................................................................................................................................................	23	1	5.00	5	0	5	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TTTGTTA--ACTC--TTTCCTTGCA......................................................................................................................................................................	21	1	3.00	3	3	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TA-----------TTTGTTA--ACTC--TTTCCTTGCAGT....................................................................................................................................................................	25	1	3.00	3	1	1	0	0	1	0
..........................................................................................................................................................................................................................................................................................TA-----------TTTGTTA--ACTC--TTTCCTTG........................................................................................................................................................................	21	1	3.00	3	3	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................TTGTTA--ACTC--TTTCCTTGCAGT....................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................GTAAATCATAGCCAGAC----------AGAAGGACA............................................................................	26	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................TTGTTA--ACTC--TTTCCTTGCAG.....................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................ATCATAGCCAGAC----------AGAAGGAC.............................................................................	21	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................AT---------ACTA-AACCACAAAGAGA---...................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................TA-----------TTTGTTA--ACTC--TTTCCTTGC.......................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................TA------------AGGGAGTGATAACAAAA-A...................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................A-----------TTTGTTA--ACTC--TTTCCTTGCA......................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGAA----------AAAGGATAATAGGAAG--	24	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TTTGTTA--ACTC--TTTCCTTGCAGA....................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................TTGTTA--ACTC--TTTCCTTGCA......................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................A-----------TTTGTTA--ACTC--TTTCCTTG........................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
............................GAATGAAC--GGGTGGACTGGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATAT---------ACTA-AACCACAAAGAGA---A..................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................GCCAGAC----------AGAAGGACAGAAG........................................................................	20	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................A-----------TTTGTTA--ACTC--TTTCCTTGCAG.....................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................A---AGTAACCAAAAAAAAAA..................................................................................................................	18	4	0.25	1	0	1	0	0	0	0

droBip1

AGAACAAAT-ATTAAAGTGTGATTTTTTGT--GAAT--GGCTGGACT--------TTTACGATTTTAAG---------------------------AC---------------CA-----CAGAAGGCTTCATGGTTAGTGAAATTGGTGGGATTTAACCAGTTTCAATTGGTTATTGCGGCAGGTCGGTCGAGTA------------AGGGAGTGATAACAAAA-AT----TAAGT-C-----AAGACCAA-TAAC----------------------CAATA-----------TTTGTTA--ACTC--TTTCCTTGCAGATACCAAACGGATACTA-ACCCAAAAAAACAAAAAAGAATAAC-----------------A--GACAGAC----------AGGAGA----AGGAAT-----------------------------CTGCCTGAGAA-----------AA----------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

AAGTCGATCGATTAAAGTGTGAATTATGG----------CAT------------------GGATTTTCGACTGAGTAAACACCAATAGATCTACAGATGATCTGTATGATGATGC-----ACCCAGTCTTCTTGGTTAGTGAAATGTGTGGGTTTAATCCAGTTTCGATTGGTTATTGTGGAAGGTCGGTCGACCGGCGTGTG---TAAGGGAGTGATAACAAAA-AT----TAAGA-A-----AAAAT------------CCAAAAAA----ATAATTCAATA-----------TTTGTTA--ACTC--TTTCCTTGCAGAAA--------------------------------------------------------------------CTAAGCGAACAAGA-----AGGAGGCTTTAAGGAGTAACCAAGAACCTATGCCTATGCCTATGGAGTAGCCCAATTGAGC-----CACGAAG--	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................................................................................................................................................................................................................................TA-----------TTTGTTA--ACTC--TTTCCTTGCA......................................................................................................................................................................	23	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TTTGTTA--ACTC--TTTCCTTGCAGT....................................................................................................................................................................	23	1	3.00	3	0	2	0	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................TTTGTTA--ACTC--TTTCCTTGCAG.....................................................................................................................................................................	22	1	3.00	3	0	2	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TA-----------TTTGTTA--ACTC--TTTCCTTGCAG.....................................................................................................................................................................	24	1	2.00	2	0	1	0	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................TA-----------TTTGTTA--ACTC--TTTCCTTGC.......................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AGAAA--------------------------------------------------------------------CTAAGCGAACAAGA-----AGGAGG.....................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TTTGTTA--ACTC--TTTCCTTGCA......................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TA-----------TTTGTTA--ACTC--TTTCCTTG........................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAAGGAGTAACCAAGAACCT..............................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................AGCGAACAAGA-----AGGAGGCTTTA................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAAGAACCTATGCCTATGCCT..................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGGAGTAGCCCAATTGAGC-----.........	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................AA--------------------------------------------------------------------CTAAGCGAACAAGA-----AGGAGGC....................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................TTTGTTA--ACTC--TTTCCTTGC.......................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCTTTAAGGAGTAACCAAGAACC...............................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................GAAA--------------------------------------------------------------------CTAAGCGAACAAGA-----AGGAGG.....................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAGCCCAATTGAGC-----C........	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACCAAGAACCTATGCCTATGC....................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................GA-----AGGAGGCTTTAAGGAGTAACC......................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................GA-----AGGAGGCTTTAAGGAGT..........................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............................................................................AAACACCAATAGATCTACAGATG...................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.AGTCGATCGATTAAAGTGTGAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTAACCAAGAACCTATGCCT........................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................AAGCGAACAAGA-----AGGAGGC....................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCTATGGAGTAGCCCAATTGAGC-----.........	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TA-----------TTTGTTA--ACTC--TTTCCTGC........................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAAGGAGTAACCAAGAACCTATGC..........................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

AAGTCGATCGATTAAAGTGTGAATTATGG----------CAT------------------GGATTTTCGACTGAGTAAACACCAATAGATCTACAGATGATCTGTA-GATGATGC-----ACACAGTCTTCATGGTTAGTGAAATGTGTGGGTTCAATCCAGTTTCGATTGGTTATTGTGGAAGGTCGGTCGACCGGCGTGTG---TAAGGGAGTGATAACAAAA-AT----TAAGA-A-----AAAAT------------CCAAAAAA----ATAATTCAATA-----------TTTGTTA--ACTC--TTTCCTTGCAGAAA--------------------------------------------------------------------CTAAGCGAACAAGA-----AGGAGGCTTTAAGGAGTAACCAAGAACCTATGCCTATGCCTATGGA-----------GTAG-----CCCAATT--	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................................................................................................................................................................................................................................................................TA-----------TTTGTTA--ACTC--TTTCCTTGCA......................................................................................................................................................................	23	1	40.00	40	39	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................TA-----------TTTGTTA--ACTC--TTTCCTTGCAG.....................................................................................................................................................................	24	1	18.00	18	17	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................TTTGTTA--ACTC--TTTCCTTGCAGT....................................................................................................................................................................	23	1	8.00	8	6	2	0	0	0	0
..........................................................................................................................................................................................................................................................................................TA-----------TTTGTTA--ACTC--TTTCCTTGC.......................................................................................................................................................................	22	1	5.00	5	4	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................TA-----------TTTGTTA--ACTC--TTTCCTTGCAC.....................................................................................................................................................................	24	1	3.00	3	3	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................A-----------TTTGTTA--ACTC--TTTCCTTGCAG.....................................................................................................................................................................	23	1	3.00	3	2	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TTTGTTA--ACTC--TTTCCTTGCA......................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TA-----------TTTGTTA--ACTC--TTTCCTTG........................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGGAGTAACCAAGAAC................................................	20	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................TTGTTA--ACTC--TTTCCTTGCAG.....................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................TA-----------TTTGTTA--ACTC--TTTCCTTGCAGA....................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TTTGTTA--ACTC--TTTCCTTGCAGG....................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TTTGTTA--ACTC--TTTCCTTGCAG.....................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TTTGTTA--ACTC--TTTCCTTGCAGA....................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TA-----------TTTGTTA--ACTC--TTTCCTTGCC......................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................A-----------TTTGTTA--ACTC--TTTCCTTGC.......................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0

droWil2

TTGATTTAT-GTAATTATTATTTTC------------------------------------G-ATTTGG------CTAACT-----AAGTC---ATAC---------------CATAGAAAAAAAGTCTTCAAATTGAGTGAAATTTCTGGAATTTAACCAGTTTCAATTGGTTATTGTGGCAGGTCGGTCGATTAACCACAGTGGTATGGAAGAGATAGCAAAA-AG--------------------TTCAATTAAAAATGTACAATCTTGACTAAATCAACA-----------TTTGTTA--ACTC--CTTCCCTACAGGACACAACTGAACATAA-CCGCAGAAATAGCAACAACTACAAC-----------------AACTACAAAG----------AGGAGG----AGATAACTACAAGGC------------------AAATGTCCGAATC-----------GATA-----GGCCAGG--	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................................................................................................................................................................................................CA-----------TTTGTTA--ACTC--CTTCCCTACAG.....................................................................................................................................................................	24	1	6.00	6	3	3	0	0	0
..............................................................................................................................................................................................................TATGGAAGAGATAGCAAAA-AG--------------------TT............................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	1	1
..........................................................................................................................................................................................................................................................................................CA-----------TTTGTTA--ACTC--CTTCCCTACA......................................................................................................................................................................	23	1	2.00	2	1	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................ACTACAAC-----------------AACTACAAAG----------AGGAGG----AG.........................................................................	26	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CTACAAC-----------------AACTACAAAG----------AGGAGG----...........................................................................	23	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAGGC------------------AAATGTCCGAATC-----------..................	22	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................CA-----------TTTGTTA--ACTC--CTTCCCTA........................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTACAAGGC------------------AAATGT....................................	19	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................CAACTACAAC-----------------AACTACAAAG----------AGGAGG----AG.........................................................................	28	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................TTTGTTA--ACTC--CTTCCCTACAGG....................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................TGAACATAA-CCGCAGAAATAGCAAC...................................................................................................................................	25	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................TATGGAAGAGATAGCAAAA-AG--------------------T.............................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................TTTGTTA--ACTC--CTTCCCTACAGT....................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................AACTACAAC-----------------AACTACAAAG----------AGGAGG----A..........................................................................	26	1	1.00	1	0	0	1	0	0

droVir3

A----------------------------------------------------------------------------------------------------------------------------GTTTTCATGCTAAGTGAATTTACTGGATATTAACCAGTTTCCGTTGGTTATTGCGGCAGGTCGGTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M027
Male-body

M028
Head

M047
Female-body

M061
Embryo

SRR060654
Ovary

SRR060655
Testis

SRR060656
Ovary

SRR060657
Testis

SRR060658
Ovary

SRR060659
Testis

SRR060660
Ovary

SRR060661
Embryo

SRR060662
Embryo

SRR060663
Embryo

SRR060664
Male-body

SRR060665
Female-body

SRR060666
Male-body

SRR060667
Female-body

SRR060668
Male-body

SRR060669
Female-body

SRR060670
Testis

SRR060671
Male-body

SRR060672
Female-body

SRR060673
Ovary

SRR060674
Ovary

SRR060675
Ovary

SRR060676
Ovary

SRR060677
Ovary

SRR060678
Testis

SRR060679
Testis

SRR060680
Testis

SRR060681
Testis

SRR060682
Embryo

SRR060683
Testis

SRR060684
Embryo

SRR060685
Embryo

SRR060686
Embryo

SRR060687
Embryo

SRR060688
Ovary

SRR060689
Testis

SRR1106712
embryo_0-2h

SRR1106713
embryo_0-2h

SRR1106714
embryo_2-4h

SRR1106715
embryo_4-6h

SRR1106716
embryo_4-6h

SRR1106717
embryo_6-8h

SRR1106718
embryo_6-8h

SRR1106719
embryo_8-10h

SRR1106720
embryo_8-10h

SRR1106721
embryo_10-12h

SRR1106722
embryo_10-12h

SRR1106723
embryo_12-14h

SRR1106724
embryo_12-14h

SRR1106725
embryo_14-16h

SRR1106726
embryo_14-16h

SRR1106727
larvae

SRR1106728
larvae

SRR1106729
mixed whole adult body

SRR1106730
embryo_16-30h

V047
Embryo

V053
Head

V116
Male-body

GSM1528803
follicle cells

No Reads

droMoj3

--------------------------------------------------------------------------------------------------------------------------GAAGTTTTCATGCTAAGTGAATTTACTGGGATTTAACCAGTTTAAGTTGGTTATTGCGGCAGGTCGGTCGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

--------------------------------------------------------------------------------------------------------------------------GGAGTCTACAAGCCAAGTGAATTTTCTGGATCTTAACCAGTTTCCGTTGGTTATTGTGGCAGGTCGGTCGT--T------------GAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_20393

2l:20546274-20546423 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-42.2	-42.2	-42.1