ID:

dsi_20383

 Coordinate:

2r:11699171-11699477 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.8 -8.6 -8.6

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(A)nSimple_repeatSimple_repeat+
mature
  1. 2l:23180353-23180373 +
  2. 2r:2883183-2883203 +
  3. 2r:11361403-11361423 +
  4. 3l:7167935-7167955 +
  5. 3l:17795036-17795056 +
  6. 3l:22631516-22631536 +
  7. 3l:22681789-22681809 +
  8. 3l:22747041-22747061 +
  9. 3r:11288972-11288992 +
  10. 3r:11693072-11693092 +
  11. 3r:13617311-13617331 +
  12. x:4261105-4261125 +
  13. dsi_25082  x:7851846-7851866 +
  14. x:19627900-19627920 +
  15. node_45218:7-27 +
  16. node_5674:1161-1181 +
  17. node_25412:70-90 +
  18. node_35965:29-49 +
  19. node_25520:156-176 +
  20. node_34857:48-68 +
  21. 2l:5961207-5961227 +
  22. 2l:18712062-18712082 +
  23. 2l:22572760-22572780 +
  24. 2l:22697207-22697227 +
  25. 2r:208345-208365 +
  26. 2r:1525894-1525914 +
  27. 2r:5967128-5967148 +
  28. 2r:8523615-8523635 +
  29. 2r:8523731-8523751 +
  30. 2r:12719226-12719246 +
  31. 3r:7349895-7349915 +
  32. x:5131590-5131610 +
  33. x:6149371-6149391 +
  34. x:7669241-7669261 +
  35. x:9823066-9823086 +
  36. x:11008751-11008771 +
  37. x:11037958-11037978 +
  38. x:14764106-14764126 +
  39. x:20516849-20516869 +
  40. node_113879:42-62 +
  41. 2l:17486873-17486893 -
  42. 2r:11507018-11507038 -
  43. 2r:12692638-12692658 -
  44. dsi_17604  2r:12886275-12886295 -
  45. 2r:18238350-18238370 -
  46. 3l:9067664-9067684 -
  47. 3l:24222078-24222098 -
  48. 3r:4518449-4518469 -
  49. 3r:11342047-11342067 -
  50. 3r:15821094-15821114 -
  51. 3r:18607033-18607053 -
  52. dsi_18576  x:106075-106095 -
  53. x:2997191-2997211 -
  54. x:10840777-10840797 -
  55. x:12518088-12518108 -
  56. x:14982907-14982927 -
  57. x:17531332-17531352 -
  58. x:20217036-20217056 -
  59. node_15830:581-601 -
  60. node_18386:1971-1991 -
  61. 2l:3797074-3797094 +
  62. 2l:16314619-16314639 +
  63. 2l:19604186-19604206 +
  64. 2l:21003874-21003894 +
  65. 2l:21772967-21772987 +
  66. 2l:23053389-23053409 +
  67. 2r:1823842-1823862 +
  68. 2r:7242984-7243004 +
  69. dsi_20383  2r:11699220-11699240 +
  70. 2r:17619126-17619146 +
  71. 3l:8987819-8987839 +
  72. 3l:21436396-21436416 +
  73. 3r:17407419-17407439 +
  74. x:3399157-3399177 +
  75. x:4731579-4731599 +
  76. x:11954259-11954279 +
  77. x:11982115-11982135 +
  78. x:12821777-12821797 +
  79. x:15570442-15570462 +
  80. node_10390:141-161 +
  81. 3r:20748369-20748389 +
  82. 3r:24168588-24168608 +
  83. 4:176308-176328 +
  84. dsi_19173  x:4934661-4934681 +
  85. x:5226627-5226647 +
  86. x:9722161-9722181 +
  87. node_20622:71-91 +
  88. node_6885:44-64 +
  89. node_123134:92-112 +
  90. 2l:3953194-3953214 +
  91. 2l:14445852-14445872 +
  92. 2l:21879143-21879163 +
  93. 2r:2476310-2476330 +
  94. 2r:3472746-3472766 +
  95. 2r:10213500-10213520 +
  96. 2r:14924680-14924700 +
  97. 3l:22597138-22597158 +
  98. 3l:22647409-22647429 +
  99. 3l:22712663-22712683 +
  100. 3l:23840508-23840528 +
  101. 3r:26772892-26772912 +
  102. x:7551704-7551724 +
  103. node_71515:148-168 +
  104. node_89022:222-242 +
  105. node_27217:36-56 +
  106. node_105875:48-68 +
  107. node_7842:2450-2470 +
  108. x:9823087-9823107 +
  109. 2l:3054507-3054527 +
  110. x:3005306-3005326 +
  111. dsi_27668  x:6833043-6833063 +
  112. x:16357043-16357063 +
  113. 2l:13807800-13807820 -
  114. 2r:8246707-8246727 -
  115. 3l:7685421-7685441 -
  116. 3l:9746097-9746117 -
  117. 3r:3761875-3761895 -
  118. 3r:8852986-8853006 -
  119. x:4556273-4556293 -
  120. x:5650881-5650901 -
  121. x:6601822-6601842 -
  122. node_84825:234-254 -
star

Sense Strand Reads

AGCCTGGTGGCCAACAACCAGCTGAACACCTATGCCGGCAATGCTTTTGGGTAACATTCTCAGACCGCCCTGCCCCATTCAAAAATACCAAACCAAACCAAAAAAAAAAAAAAAAAAAAAAACACCAAGCAATCCCTCCCAAAAACAAAACCAACACATCCCAAAAAACCAAAACCAAAAAAAAAATTACAAAATACAAAAACCCAACCGAGCGCGCACAACGTTCCTAACTCTAGTTACTACCCTCGTTCTCTCGTTCTCTCGACTCTCGATTCCCACGACATCCCCACCATGATCACCACATCTCCACATCACCATCGACCACCACTTCACCACCATTTCGGTTAGCTCGTCCAGTGGCAATGTGGGAAATGCGAATGGAGGCGGCGGCGCCGTAACCATCTACA
***************************************************************************************************..............................................................................................................(((.(((......((..(((....)))..))......))).)))((((....((((...)))).....)))).........................................************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 M053
female body
 M023
head
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 O002
Head
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
...................................................................................................AAAAAAAAAAAAAAAAAAAAA............................................................................................................................................................................................................................................................................................... 21 0 20 9.05 181 0 181 0 0 0 0 0 0 0 0 0
.....................CTGAACACCTATGCCGGCAATGC........................................................................................................................................................................................................................................................................................................................................................................... 23 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................TCTCCACATCACCATCGAC..................................................................................... 19 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................ATCTCCACATCACCATCGACCAC.................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................ACCATTTCGGTTAGCTCGTCCAG.................................................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................AAAAAAAAAAAAAAAAAAAAACACCAAGCACCCCC............................................................................................................................................................................................................................................................................... 35 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................AGACTAAACAAAACCAAAAAAAAAAAAAAAAAAAAA............................................................................................................................................................................................................................................................................................... 36 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................TACCAATCCGAACCAAAAAAAAAAAA........................................................................................................................................................................................................................................................................................................ 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................AAAAAAAAAAAAAAAAACACCAAGCAACCCCCCCCG.......................................................................................................................................................................................................................................................................... 36 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................CCAAAACAAACCAAACAAAAAAAAAAAAAAAAAAAA............................................................................................................................................................................................................................................................................................ 36 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................CCAAAACAAACCAAAAAAAAAAAAAAAAAAAAAAAA............................................................................................................................................................................................................................................................................................ 36 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................CCAAACAAAACCACAAAAAAAAAAAAAAAAAAAAAA............................................................................................................................................................................................................................................................................................ 36 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................AAAAAAAAAAAAAAAAAAAAAACACCCAACAACCC................................................................................................................................................................................................................................................................................ 35 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................AAAAAAAAAAAAAAAAAAAGAAAAAAACACCAAGCA.................................................................................................................................................................................................................................................................................... 36 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................CTCGTTCTCTCGACTCTCGATTCCCAC................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................AAAAAAAAAAAAAAAAAAAA.............................................................................................................................................................................................................................................................................................. 20 0 20 0.60 12 0 0 0 12 0 0 0 0 0 0 0
......................................................................................CCCAACCAAAACCAAAAAAAAAAAAAAAAAAAAAAA............................................................................................................................................................................................................................................................................................. 36 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................................GGAATGCGAATGGAGGGGACG.................. 21 3 4 0.50 2 0 0 0 0 0 0 0 2 0 0 0
..............................................................................................................AAAAAAAAAAAAACCCAAGCATTCCC............................................................................................................................................................................................................................................................................... 26 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................AAAAAAAAAAAAAAAAAAACAACACCCAGCCA................................................................................................................................................................................................................................................................................... 32 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................................................CGAATTGAGGCGGCGGC................ 17 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................................................................CGCCGGAACCATCTGCA 17 2 17 0.47 8 0 0 0 0 8 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................................................GAATTGAGGCGGCGGC................ 16 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................ACCAAACAAAAAAAAAAAAAAAAAAAAAAAATACAA........................................................................................................................................................................................................................................................................................ 36 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................................AATGCGGATTGAGGGGGCGGC................ 21 3 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................CAAACCAAACAAAAAAAAAAAAAAAAAAAAAAAAAA........................................................................................................................................................................................................................................................................................... 36 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................AAATAAAAAACCAAACAAAAAAAAAAAAAAAAAAAA................................................................................................................................................................................................................................................................................................. 36 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TACTACCATGGCTCTCTCG....................................................................................................................................................... 19 3 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................AAAAAAAAAAAAAAAAAA............................................................................................................................................................................................................................................................................................... 18 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................CCCCGACATCTCCACCA................................................................................................................... 17 2 20 0.10 2 0 0 0 0 0 0 0 0 2 0 0
...................................................................................................AAAAAAAAAAAAAAAAAAAAAAACA........................................................................................................................................................................................................................................................................................... 25 0 20 0.10 2 0 0 0 1 0 0 1 0 0 0 0
..............................................................................................GAACCAAAAAAAAAAAAAAAAAAAAAA.............................................................................................................................................................................................................................................................................................. 27 1 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................AAACCACAAAAAAAAAAAAAAAAAA................................................................................................................................................................................................................................................................................................ 25 1 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................AAAAAAAAAAAAAAAAAAAAAAAACCAAACAAACC................................................................................................................................................................................................................................................................................ 35 3 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................ACAAAAACTCACCCGGGCG................................................................................................................................................................................................. 19 3 17 0.06 1 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................................................................................................................................................CCAGTGGCAATGAGG....................................... 15 1 17 0.06 1 0 0 0 0 0 0 0 0 0 0 1
...........................................................................................ACAAAACAAAAAAAAAAAAAAAAAAAAAAAACAACA........................................................................................................................................................................................................................................................................................ 36 3 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................ACCGAACGAAAAAAAAAAAAAAAA.................................................................................................................................................................................................................................................................................................... 24 2 17 0.06 1 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................AAAAAAAAAAAAAAAAAAAAC............................................................................................................................................................................................................................................................................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................AAACCACAAAAAAAAAAAAAAAA.................................................................................................................................................................................................................................................................................................. 23 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................AAAAAAAAAAAAAAAAC............................................................................................................................................................................................................................................................................................ 17 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................................................................................................................................................................................GAATTGAGGCGGCGGCC............... 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................AAAAAAAAAAAAAAAAAAAAAAC............................................................................................................................................................................................................................................................................................ 23 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................................TGGGAAGTGCGAATG........................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
.................................................................................................CCAAAAAAAAAAAAAAAAAAAAAAA............................................................................................................................................................................................................................................................................................. 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
................................................................................................ACCTAAAAAAAAAAAAAAAAAAAAA.............................................................................................................................................................................................................................................................................................. 25 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................ACCAAAAAAAAAAAAAAAAA................................................................................................................................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................CAAAAAAAAAAAAAAAAA................................................................................................................................................................................................................................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

TCGGACCACCGGTTGTTGGTCGACTTGTGGATACGGCCGTTACGAAAACCCATTGTAAGAGTCTGGCGGGACGGGGTAAGTTTTTATGGTTTGGTTTGGTTTTTTTTTTTTTTTTTTTTTTTGTGGTTCGTTAGGGAGGGTTTTTGTTTTGGTTGTGTAGGGTTTTTTGGTTTTGGTTTTTTTTTTAATGTTTTATGTTTTTGGGTTGGCTCGCGCGTGTTGCAAGGATTGAGATCAATGATGGGAGCAAGAGAGCAAGAGAGCTGAGAGCTAAGGGTGCTGTAGGGGTGGTACTAGTGGTGTAGAGGTGTAGTGGTAGCTGGTGGTGAAGTGGTGGTAAAGCCAATCGAGCAGGTCACCGTTACACCCTTTACGCTTACCTCCGCCGCCGCGGCATTGGTAGATGT
*************************************************************************************..............................................................................................................(((.(((......((..(((....)))..))......))).)))((((....((((...)))).....)))).........................................*************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR1275487
Male larvae		 M053
female body
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR1275485
Male prepupae		 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR1275483
Male prepupae		 GSM343915
embryo
 O001
Testis
 M023
head
 M025
embryo
....................................................................................................................TTTTTTGTGGTGGGCTAGGGA.............................................................................................................................................................................................................................................................................. 21 3 8 4.63 37 14 12 1 1 3 1 0 0 3 0 2 0 0 0 0
..................................................................................................................TTTTTTTTGTGGTGGGCTAGGGA.............................................................................................................................................................................................................................................................................. 23 3 1 4.00 4 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TTTTTTTGTGGTGGGCTAGGGA.............................................................................................................................................................................................................................................................................. 22 3 3 3.00 9 6 1 0 0 0 0 0 2 0 0 0 0 0 0 0
......................................................................................................................TTTTGTGGTGGGTTAGGGA.............................................................................................................................................................................................................................................................................. 19 2 4 1.50 6 1 5 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TTTTTTGTGGTGGGTTAGGGA.............................................................................................................................................................................................................................................................................. 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......TCCGGTTGTTGTGCGACTTGTG.......................................................................................................................................................................................................................................................................................................................................................................................... 22 3 5 1.00 5 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TTTTTTTGTGGTGGGCTAGGGAG............................................................................................................................................................................................................................................................................. 23 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTTGTGGTGGGTTAGGGA.............................................................................................................................................................................................................................................................................. 18 2 15 1.00 15 2 12 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTTGGGTTGGTTTTTTTTTTT......................................................................................................................................................................................................................................................................................................... 21 1 9 0.89 8 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TTTTTGTGGTGGGTTAGGGAT............................................................................................................................................................................................................................................................................. 21 3 5 0.60 3 0 2 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................TTTTTGTGGTGGGCTAGGGAG............................................................................................................................................................................................................................................................................. 21 3 5 0.60 3 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................TTTTGTGGTGGGTTAGGGAT............................................................................................................................................................................................................................................................................. 20 3 20 0.50 10 1 7 0 1 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................................TGATGTGAGCAAGAGA......................................................................................................................................................... 16 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TTTTGTGGTTGGCTAGGGA.............................................................................................................................................................................................................................................................................. 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGTGGTTCGTTAGGTAG............................................................................................................................................................................................................................................................................. 17 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................TGGTTTTGGTTTTTTTTTT............................................................................................................................................................................................................................. 19 0 9 0.33 3 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0
........CCGGTTGTTGTGCGACTTGTGC......................................................................................................................................................................................................................................................................................................................................................................................... 22 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......TCCGGTTGTTGTGCGACTTGTGG......................................................................................................................................................................................................................................................................................................................................................................................... 23 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........CCGGTTGTTGTGCGACTAGTG.......................................................................................................................................................................................................................................................................................................................................................................................... 21 3 9 0.33 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0
........CCGGTTGTTGTGCGACTTTTG.......................................................................................................................................................................................................................................................................................................................................................................................... 21 3 7 0.29 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
........ACGGTTGTTGGTCGATTGGTG.......................................................................................................................................................................................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................CGAGGGAAGTTTTTAGGGTTT........................................................................................................................................................................................................................................................................................................................... 21 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TTTTGATGGTTAGGTTTGGTTGT................................................................................................................................................................................................................................................................................................................ 23 3 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................TTTGTGGTGCGCTAGGGA.............................................................................................................................................................................................................................................................................. 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................ATGTTGGGAGCAAGA........................................................................................................................................................... 15 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTTGTGGTTGGCTAGGGA.............................................................................................................................................................................................................................................................................. 18 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........CCGGTTGTTGTGCGACTTATG.......................................................................................................................................................................................................................................................................................................................................................................................... 21 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............ATGTTGGTTGACTAGTGGAT....................................................................................................................................................................................................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................TTTGGGTTGGTTTTTTTTTTTTT....................................................................................................................................................................................................................................................................................................... 23 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTTGGGTTGGTTTTTTTTTT.......................................................................................................................................................................................................................................................................................................... 20 1 11 0.18 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
........CCGGTTGTTGGTCGACA.............................................................................................................................................................................................................................................................................................................................................................................................. 17 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................GGTGATAGTGGTTTAGAGGT.................................................................................................. 20 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TTTTGTGGTGGGCTAGGGAG............................................................................................................................................................................................................................................................................. 20 3 12 0.17 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................TTTTTTTGTGGTGGGCTAGGG............................................................................................................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TGGCAGGACGGGGTA......................................................................................................................................................................................................................................................................................................................................... 15 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TTTTTTGTGGTGGGCTAGGG............................................................................................................................................................................................................................................................................... 20 3 19 0.16 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TTTTGTGGTGCGCTAGGGAT............................................................................................................................................................................................................................................................................. 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................TTGGGTTGGTTTTTTTTTTT......................................................................................................................................................................................................................................................................................................... 20 1 14 0.14 2 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0
......CTCCGGTTGTTGTGCGACTTG............................................................................................................................................................................................................................................................................................................................................................................................ 21 3 15 0.13 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................AAGGGTTTTTGGGTTTTGGTT..................................................................................................................................................................................................................................... 21 2 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................TCAGGCGGGACGGGG........................................................................................................................................................................................................................................................................................................................................... 15 1 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................AGAGCTTAGGGTGCTGGGGG......................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................TGGTGGCAAGGCCAATCGT......................................................... 19 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................TTGGTTTTGGTTTTTTTTT.............................................................................................................................................................................................................................. 19 0 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................TTTTTTTTTTTTTTTTTTTTGGGGT........................................................................................................................................................................................................................................................................................ 25 1 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TGGTTTTGGTTTTTT................................................................................................................................................................................................................................. 15 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................TGTAGAGGTTTAGTAGT.......................................................................................... 17 2 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TTTTTTTTAATGCTATAAGTTTT.............................................................................................................................................................................................................. 23 3 12 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........CCGGTTGTTGTGCGACTGGTG.......................................................................................................................................................................................................................................................................................................................................................................................... 21 3 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TGGTTTTGGTTTTTTTTT.............................................................................................................................................................................................................................. 18 0 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TTTTTGTGGTGGGATAGGGA.............................................................................................................................................................................................................................................................................. 20 3 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................CTACGGGTGCTGGAGGGAT...................................................................................................................... 19 3 14 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................TGGTTTTGGTTTTTTTT............................................................................................................................................................................................................................... 17 0 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTTTTTTTTTGTTTTTTTTTTGGGGT........................................................................................................................................................................................................................................................................................ 26 2 15 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................................................CCGCCGCGCGATTGGTTGA... 19 3 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................GGAGTGTTTTTGTTTT................................................................................................................................................................................................................................................................. 16 1 17 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......TCCGGTTGTTGGACGACT.............................................................................................................................................................................................................................................................................................................................................................................................. 18 2 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TTTTGTGGTGGGTTAGGG............................................................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TTTTTTTTTTTTTTTTTTTTTTT............................................................................................................................................................................................................................................................................................. 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................GGTTTTGGTTTTTTTTTTTAT.......................................................................................................................................................................................................................... 21 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................TTGTGGTGGGTTAGGGA.............................................................................................................................................................................................................................................................................. 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTTTTTTTTTTTTTTTTTTTTGGGGGT........................................................................................................................................................................................................................................................................................ 27 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................................................................................................................................................CCGAGCAGGTCACGGTT............................................ 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......TCCGGTTGTTGGTCGACG.............................................................................................................................................................................................................................................................................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................TTTTTTTTTTTTTTTTTTTTTGGGGGT....................................................................................................................................................................................................................................................................................... 27 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................TTATTTTTTTTTTTTTTTTGGGGT........................................................................................................................................................................................................................................................................................ 24 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................GGTTTTGGTTTTTTTTTTATTCT........................................................................................................................................................................................................................ 23 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................CCCAATCCAGTAGGTCAC................................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:11699121-11699527 + dsi_20383 AGCCTGGTGGCCAACAACCAGCTGAACACCT------ATGCCGGCAATGCTTTTGGGTAACATTCTCAGACCGCCCTG-----------C-------------------------------CCCAT----------TCAAAAA---TACCA-------------------AACCAAA----CCA-AAAAA---AA-----AAAAAAAA----------------AAAA--AAA--------------------CA----------CCAAGCAATCCCTCCCAAAAACAA----------------------AACCAA---------------------------CACATC--------CCAAA-------------------------AAACCAA--AACCAAAAA------------------------AAAAATTACAAAATA-----CA-------------------------------------------------AAAACCC--AACCG-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTCGACTC-------------------------------------------------------TCGAT-TCCCACG----------------------A----CATC--CCC----ACCATGATC-------ACCAC----ATCT-CCA-------CATCA-----------------------C---C------------------ATCGACCACCAC------T------------------------------------TCACCA------CCATTT------CGGTTAGCTCGTCCAGTGGCAAT---------GTGGGAAATGCGAATGGAGGCGGC---------GGCGCCGTAACCATCTACA
droSec2 scaffold_1:8522485-8522907 + AGCCTGGTGGCCAACAACCAGCTGAACACCT------ATGCCGGCAATGCTTTTGGGTAACATTCTCAGACCGCCCTG-----------C-------------------------------CCCAT----------TCAAAAA---TACCA-------------------AACCAAA----CAAA-AAAA---AA------------AAAAAAAAAAAAAA--AAAAAAAAA--------------------AAAAAAAAAAAACCCAAGCAATCCCTCCCAAAAACAA----------------------AACCAACCAA-----------------------CACATC--------CCAAA-------------------------AAACCA------------------------AAA---------AAAAATTACAAAATA-----CA-------------------------------------------------AAAACCC--AACCG-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTCGACTC-------------------------------------------------------TCGAT-TCCCACG----------------------A----CATC--CCC----ACCATGATC-------ACCAC----ATCT-CCA-------CATCA-----------------------C---C------------------ATCGACCACCAC------T------------------------------------TCACCA------CCATTT------CGGTTAGCTCGTCCAGTGGCAAT---------GTGGGAAATGCGAATGGAGGCGGC---------GGCGCCGTAACCATCTACA
dm3 chr2R:11028133-11028537 + AGCCTGGTGGCCAACAACCAGCTGAACACCT------ATGCCGGCAATGCTTTTGGGTAACATTCTCAGACCGCCCTG-----------C-------------------------------CCCAT----------TCAAAAA---TACCA-------------------AACCAAA----CCA-AAAAA---AA--------------------------------A--AAA--------------------CA----------CCAAGCAATCCCTCCCAAAAACAA----------------------AACCAA---------------------------CACATC--------CCAAG-------------------------AAACCAA--AACCAAAAAAAAAAAAA------------ACAAAAA---TACAAAATA-----CA-------------------------------------------------AAAACCC--AACCG-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTCGACTC-------------------------------------------------------TCGAT-TCCCACG----------------------A----CATC--CCC----ACCATGATC-------ACCAC----ATCT-CCA-------CATCA-----------------------C---C------------------ATCGACCACCAC------T------------------------------------TCACCA------CCATTT------CGGTTAGCTCGTCCAGTGGCAAT---------GTGGGAAATGCGAATGGAGGCGGC---------GGCGCCGTAACCATCTACA
droEre2 scaffold_4845:14845644-14846037 - AGCCTGGTGGCCAACAACCAGCTGAACACCT------ATGCCGGCAATGCTTTTGGGTAACATTCTCAGACCGCCCTG-----------C-------------------------------CCCCT----------TCAAAAA---TACCAAA-------------------------------------AAAA---AAAAAAAAAAA----------------AAAA--AATC------------------AAACC----------AAGAAACCCCTCCCAAAAACAA----------------------AACAAA---------------------------CACATC--------CCAAAAAAAAAAACCAAAAAAAA------------------------------------------------T---AAT-------TA-----CA-------------------------------------------------AAAACCC--AACCG-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTCGACTC-------------------------------------------------------TCGAT-TCCCACG----------------------A----CATC--CCC----ACCATGATC-------ACCAC----ATCT-CCA-------CATCA-----------------------C---C------------------ATCGACCACCAC------T------------------------------------TCACCA------CCATTT------CGGTTAGCTCGTCCAGTGGCAAT---------GTGGGAAATGCGAATGGAGGCGGC---------GGCGCCGTAACCATCTACA
droYak3 2R:10948617-10949028 + dya_538 AGCCTGGTGGCCAACAACCAGCTGAACACCT------ATGCCGGCAATGCTTTTGGGTAACATTCTCAGACCGCCCTG-----------C-------------------------------CCCAT----------TCAAAAA---TACCAAA-------------------------------------AAAA---AAA-AAAAAAA----------------AAAA--AATT------------------AAACC----------AAGAAACCCCTCCCAAAAACAA----------------------AACCAA---------------------------CACATC--------CCAAAA----AAACCAAAAAAAAAAATAAGAAACCAA--AACCAAAA-----------------------ACAA----------ATA-----CA-------------------------------------------------AAAACCC--AACCG-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTCGACTC-------------------------------------------------------TCGAT-TCCCACG----------------------A----CATC--CCC----ACCATGATC-------ACCAC----ATCT-CCA-------CATCA-----------------------C---C------------------ATCGACCACCAC------T------------------------------------TCACCA------CCATTT------CGGTTAGCTCGTCCAGTGGCAAT---------GTGGGAAATGCGAATGGAGGCGGC---------GGCGCCGTTACCATCTACA
droEug1 scf7180000409462:125411-125781 - AGCCTGGTGGCCAACAACCAGCTGAACACCT------ATGCCGGCAATGCTTTTGGGTAACATTCTCAGACCGCCCTG-----------C-------------------------------CCCAT----------TA----------------------------------------------ACTAAAAA-------------------------AAAAACAAA--------AAAAAAAATAATATGA------------A---------ACCCCTCCCGAAAACAA----------------------AACCAACACAAACA-----------------------TC--------CC-------------------------------------------------------CAAAAACA-----AA---AAAA-----------------------------------------------------------------AAACCC--AACCG-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTCGACTC-------------------------------------------------------TCGAT-TCCCACG----------------------A----CATC--CCA----ACCATGATC-------ACCAC----ATCT-CCA-------CATCA-----------------------C---C------------------ATCGCCCACCAC------T------------------------------------TCACCA------CCATTT------CGGTTAGCTCGTCCAGTGGCAAT---------GTGGGAAATGCGAATGGAGGCGGC---------GGTGCCGTAACCATCTACA
droBia1 scf7180000302143:1492131-1492494 + AGCCTGGTGGCCAACAACCAGCTGAACACCT------ATGCCGGCAATGCTTTTGGGTAACATTCTCAGACCGCCCTG-----------C-------------------------------CCCAT----------AAAA---AAA-------AA------------------------------------------------------------------------A--AAAC------------------AAACC---AAA---------ACCCCTCCCGAAAACAA----------------------A--CAACACCAACA-----------------------TC--------CCAAAA------------------------------------------------------------------------A------------------AA-AC-----------------------------------CAA---AAAACCC--AACCG-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTCGACTCT----C-----GACTC---------------------------------------TCGAT-TCCCACG----------------------A----CATC--CCA----ACCATGATC-------ACCAC----ATCT-CCACAA----CATCA-----------------------C---C------------------ATCGACCACCTC------A------------------------------------TCACCA------CCATTT------CGGTTAGCTCGTCCAGTGGCAAT---------GTGGGGAATGCGAATGGAGGCGGC---------GGTGCCGTAACCATCTACA
droTak1 scf7180000415389:176394-176765 - AGCCTGGTGGCCAACAACCAGCTGAACACCT------ATGCCGGCAATGCTTTTGGGTAACATTCTCAGACCGCCCTG-----------C-------------------------------CCCAT----------AAAA---AAA-------AA-----------------------------------------------------ATATATATA--------------------------TATATGAAA--ACCA--AAA---------ACCCCTCCCGAAAACAA----------------------AACCAACACAAACA-----------------------TC--------CCAAAA-----------------------------------------------------------------------AA------------------AA-AC-----------------------------------CAAATAAAAACCC--AACCG-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTCGACTC-------------------------------------------------------TCGAT-TCCCACG----------------------A----CATC--CCA----ACCATGATC-------ACCAC----ATCT-CCA-------CATCA-----------------------C---C------------------ATCGACCACCAC------T------------------------------------TCACCA------CCATTT------CGGTTAGCTCGTCCAGTGGCAAT---------GTGGGAAATGCGAATGGAGGCGGC---------GGTGCTGTAACCATCTACA
droEle1 scf7180000491214:3866972-3867390 + AGCCTGGTGGCCAACAACCAGCTGAACACCT------ATGCCGGCAACGCTTTTGGGTAACATTCTCAGACCGCCCTG-----------A-------------------------------CCCAT----------TAAAAAA---TACCAAA-------------------------------------AAAAACCAA-----------------------------------------------------AAACCA--AAA---------ACCCCTCCCGAAAACAAAACA-A-AAACCAAA-----------AACACCAACAT----------------------TC--------CCAAA-------------------------AAACCAAAAAACCAAAAAAAAAAAAA-----------------------------------------------------A-----A---------------------------AAAACCCAAAACCGAAGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTCGACTC-------------------------------------------------------TCGAT-TCCCACG----------------------A----CATC--CCA-ACAACCATGATC-------ACCAC----ATCT-CCA-------CATGACCACCAAC-CA---TCA-----ACCA---------TCAACC-----ATCGACCA----------T------------------------------------CGACCA------CCATTT-----CCGGTTAGCTCGTCCAGTGGCAAT---------GTGGGAAATGCGAATGGAGGCGGC---------GGTGCCGTAACCATCTACA
droRho1 scf7180000776849:822296-822667 - AGCCTGGTGGCCAACAACCAGCTGAACACCT------ATGCCGGCAACGCTTTTGGGTAACATTCTCAGACCGCCCTG-----------C-------------------------------CCCAT----------AAAA---AAA-------AA-----------------------------------------------------------------------------------------------------CA--AAA---------ACCCCTCCCGAAAACAAAAAAATAAAACCAA------------AACACCAACAT----------------------TC--------CCAAA-----------------------------------------------------------------------------------------AAAAAAAAAAAAAAAC-----AA--------------------------AAACCCC--AACCG-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTCGACTC-------------------------------------------------------TCGAT-TCCCACG----------------------A----CATC--CCA-ACAACCATGATC-------ACCAC----ATCT-CCA-------CACGA-----------------------C---C------------------ATCGACCACCAC------T------------------------------------TCACCA------CCATTT-----CCGGTTAGCTCGTCCAGTGGCAAT---------GTGGGCAATGCGAATGGAGGCGGC---------GGTGCCGTAACCATCTACA
droFic1 scf7180000453342:894193-894615 - AGCCTGGTGGCCAACAACCAGCTGAACACCT------ATGCCGGCAACGCTTTTGGGTAACATTCTCAGACCGCCCTG-----------C-------------------------------CCCAT----------GAAA--------CCAAAAAG-----------AAAATCCAAA------------------------------------------------------------------AATATG-----------AAA---------ACCCCTCCCGAAAACAG----------------------AAC----ACAAACATCCCAAACCAAACAAAAAA------CAAAAACC---AA------------A-------------------------------AA------CCAAAACA-----AA---AAAA-----------------------------------------------------------------AAACCA--AATCG-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTCGACTC-------------------------------------------------------TCGAT-TCCCACG----------------------A----CATC--CCG---AACCATGATC-------ACCAC----ATCT-CCA-------CTTCA-----------------------C---C------------------ATCGACCACCACTCACCATCGACCACGACTTCAC-----------------CACTTCACCACCATGACCATTT-----CCGGTTAGCTCGTCCAGTGGCAAT---------GTGGGGAATGCGAACGGAGGCGGC---------GGTGCCGTGACCATCTACA
droKik1 scf7180000302367:106699-107070 - AGCCTGGTGGCCAACAATCAGCTGAACACCT------ATGCCGGCAACGCTTTTGGGTAACATTCTCAGACAGCCCTG-----------A-------------------------------CCCTA---------CAAAA---AAA-------AAC-----------A----------------------------------------AAAT-TTTC--------------------------TATAT-----------------------------------------------AAAACC-----------------ACATACCT----------------------TC--------CC-----------------------------------------------------------------------------------------CCAAAAAAATCAAAAAAACAAAACAA---------------------------AACCCA--AAACG-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTCGACTC-------------------------------------------------------TCGAT-ACCCATG----------------------A----CATC--CCC---AATCATGATC-------ATCAC-ATCATCT-CCAACC-----------ACCAAACCA------------C---C------ATGA---------------ACCAC------A------------------------------------TCACCA------CCATTT------CGGTTAGCTCGTCCAGTGGCAAT---------GTGGGAAATGCGAATGGAGGCGGCGGCGGCGGAGGTGCCGTTACCATCTATA
droAna3 scaffold_13266:2319664-2320116 - AGCCTGGTGGCCAACAACCAGCTGAACACCT------ATGCCGGCAACGCTTTTGGGTAACATTCTCAGACCGCCCTG-----------C-------------------------------CCCCC----------CAAAAAA---AAAAA-------------------ATTCAAA----TTTA-AAAA---AA------------AGTATATATTAAAAACAAAAA--AATT------------------AAATTAAAAAA---------ACCTATCCCAAGAAAAA----------------------AAAAA----------------------------------------CC---AA------------A-------------------------------AA------CCAAAACACCAACACAAATACAACAAATTTTCCCCCA-------------------------------------------------AAATCCA--AAACG-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTCCAC-----------------------------------------------------------GAA----------CACACCACCACCAACCATCGA----CATC--CCA----ATCATGACC-------ATCATCTTCATCT-CCAACTCCGA-----CCTCC--ATCATCAT------CATCATC------------------ATCCATCGCCAT------T------------------------------------T----G------CCATTT------CGCTTAGCACCTCCAGTGGCAAT---------GTGGGGAATACAAATGGAGGCGGC---GCCGGTGGTGCTGTTACCATCTACA
droBip1 scf7180000396759:1364838-1365266 - AGCCTGGTGGCCAACAACCAGCTGAACACCT------ATGCCGGCAACGCTTTTGGGTAACATTCTCAGACCGCCCTG-----------C-------------------------------CCCCT----------CCAAAAT---TT------------------------------------AATAAAAAAAATTAAA-AAAAAAA----------------GAAT--AATT------------------AAACTA--AAA---------ACCTATCCCGAAAAAAA-AGA-T-AAACCAAAAGCCCAAC--CAACACCAAC--------------------------------------------------------------------------------------------------------ACAAATAC--CAAAATGTCC-----------------------------------CCCC---------------AAATCC--AAACG-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTC---------------------------------------------------------------------CACGAACACAC------CAACCATCGACAACCATC--CCA----ATCATGACC-------ACCATCTTCATCT-CCAACTCCGA-----ACACC--ATCA------------C---C---A---TC---------ATCG----CC--------A------------------------------------TCATTG------CCATTT------CGCTTAGCACCTCCAGTGGCAAT---------GTGGGAAATGGGAATGGAGGCGGC---GGCGGCGGTGCCGTTACCATCTACA
dp5 3:8895029-8895433 + ACTCTGGTGGCCAATAACCAACTAAACACCT------ATGCCGGCAATGCTTTTGGGTAACATTCTCAGACCGCC-TCCTCTACTCCTCTACTCTACTCCCCCCAACCACCCTGAAAACACCCCCTCAAACCCAAC----C--AAA-------AAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------------------AA---AAC-------------------------------------AAAACCCGCACCCCAA--GTCCC----------------AAA-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCTCCGTTCTCTCGTTCTCTCAACTCGCTCTCAT---G-CTCTCGTGTCTCCAACTCCGAACCGACAACACCGACAACCAATCCAT-CCACATG----------------------A----TCTC--CTC----CTCATCATC-------AACA---------------------------------------------ACATCATCATCCACATCAAC-CACAT--CGA---------------------------------------------------------------CATTT------TGCTTAGCTCCTCCAGTGGCAAT---------GTGGGAAATGGGAATGGAGGC------------AATGCCGTTACCATCTATA
droPer2 scaffold_4:2780413-2780823 + ACTCTGGTGGCCAATAACCAACTAAACACCT------ATGCCGGCAATGCTTTTGGGTAACATTCTCAGACCGCC-TCCTCTACTCCTCTACTCTACTCCCCACAACCACCCTGAAAACACCCCCTCAAACCCAAC----C--AAA-------AAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------AAAACA-----AA---AAC-------------------------------------AAAACCCGCACCCCAA--GTCCC----------------AAA-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCTCCGTTCTCTCGTTCTCTCAACTCGCTCTCAT---G-CTCTCGTGTCTCCAACTCCGAACCGACAACACCGACAACCAATCCAT-CCACATG----------------------A----TCTC--CTC----CTCATCATC-------AACA---------------------------------------------ACATCATCATCCACATCAAC-CACAT--CGA---------------------------------------------------------------CATTT------TGCTTAGCTCCTCCAGTGGCAAT---------GTGGGAAATGGGAATGGAGGC------------AATGCCGTTACCATCTATA
droWil2 scf2_1100000004521:538580-538771 + AGCAA---------CAACAA------------------------------------------------------------------------------------------------------------------------------CACCAACAACAACAACGTCAGCAGACTCATCACCATGCAACGCCAA-------------------------ACAAGCAAC--------AACGCCAACATCACAA------------T---------CATCATCACAACAACAA----------------------CAACAAC-------------------------------------------AA------------C-------------------------------AACAGCAACAATAACA-----AC---AACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAAATCAAGCAGCCAT---------CGAGGGCGTGCCTCGGCCGCC------------ACACCAAATGCTGCCGCCG
droVir3 scaffold_12875:9895618-9895828 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCA-AGCGCGCACATTGCTCC--TAACTCTAGTTACTACCCT-CGTTC--TTGTTCTCTCAACTC-------------------------------------------------------GTTCT-T----------------------------------GTC--CCC----ACTATGATCCACGCTTACCAC----ACTTACCG-CTTCGC-----GCCCC--C---------------------CCCACGTCAAC-G--AT--CTA---------------------------------------------------------------CACTTAACGTGC-TGCAGCTCGTCGGGCGGCGGTGGCCAAACCGTTGGCAATGTGA---GCGGCAGT---------GGAGCCGTTACCATCTATA
droMoj3 scaffold_6496:17138651-17138980 - ACGCTCGTGGCCAACAATCAGCTGAACACGTTTCACAATGCCGGCAATGCTTTTGGGTAATGTTCGCAGACCCACTTCTTGAACCCCTCCTCCCCAGC-----------------------CCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACTCCCATTGCTCC----------------ACA-AGCGCGCACAAAGCTCCTCTAACTCTCGTTACTACCCT-CGTTCTCTTGTTCTCTCAACTCACACACACAAACACAC---------------------------------------TCGAACACCTACG----------------------C----CTTC--ACA-----C---------------------------------------------------------------------------------------------------------------------------ACACACACACACACACACATACGAATACCCTGAACAC-----GCAC-TGCAGCACGTCGAGCGGCGGCGGCCAAACCGTTGGCAATGTGA---GCGGCAGC---------GGCGCCGTTACCATCTACA
droGri2 scaffold_15245:3096470-3096796 + ACCCTGGTGGCCAATAATCAGCTCAACACGTTTCACAATGCCGGCAATGCTTTTGGGTAATGTTCTCAGACAGCCCTC-----------C-------------------------------TTCC----------------------------------------------------------------------------------------------------------------------------------------------------CCCCTCTCTAAAAAA--------------------------------------------------------------CAAAAA--CCAAA-----------------------------------------------------------------------------------------AAAAAA-----AAAACAAAACAG--------------------------A--TATA--CACCC-AGCGCGCAGAATGCTCC--TAACTCTCGTTACTACCCT-CGTTC--TTGTTCTCTCAACTC---------------------------------------------------------G-T-TCTCGCC----------------------C----CACACCCCACACAAATGTGATC-----------C----ATCC--------------CA---CCAAC-CA--ATCAACAAC----------AAATCA-----------------------------------------------------------------ACCA---------------------ACAGCTCCTCCAGTGGCGGTGGCCAAACGGTTGGCAATGTGA---GCGGCAGT---------GGTGCCGTTACCATCTATA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGCCTGGTGGCCAACAACCAGCTGAACACCT------ATGCCGGCAATGCTTTTGGGTAACATTCTCAGACCGCCCTG-----------C-------------------------------CCCAT----------TCAAAAA---TACCA-------------------AACCAAA----CCA-AAAAA---AA-----AAAAAAAA----------------AAAA--AAA--------------------CA----------CCAAGCAATCCCTCCCAAAAACAA----------------------AACCAA---------------------------CACATC--------CCAAA-------------------------AAACCAA--AACCAAAAA------------------------AAAAATTACAAAATA-----CA-------------------------------------------------AAAACCC--AACCG-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTCGACTC-------------------------------------------------------TCGAT-TCCCACG----------------------A----CATC--CCC----ACCATGATC-------ACCAC----ATCT-CCA-------CATCA-----------------------C---C------------------ATCGACCACCAC------T------------------------------------TCACCA------CCATTT------CGGTTAGCTCGTCCAGTGGCAAT---------GTGGGAAATGCGAATGGAGGCGGC---------GGCGCCGTAACCATCTACASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................A-AAAAA---AA-----AAAAAAAA----------------AAAA--A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21209.051810001810000000000000
.....................CTGAACACCT------ATGCCGGCAATGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00210100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT-CCA-------CATCA-----------------------C---C------------------ATCGAC.............................................................................................................................................................1912.00220000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCT-CCA-------CATCA-----------------------C---C------------------ATCGACCAC..........................................................................................................................................................2311.00100000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------CCATTT------CGGTTAGCTCGTCCAG....................................................................2311.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGTTCTCTCGACTC-------------------------------------------------------TCGAT-TCCCAC.......................................................................................................................................................................................................................................................................................................2711.00100000100000000000
..........................................................................................................................................................................................AAAA---AA-----AAAAAAAA----------------AAAA--AA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.6012001200000000000000
...........................................................................................................................................................................................AAA---AA-----AAAAAAAA----------------AAAA--A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.10200000000000200000
.......................................................................................................................................................................................A-AAAAA---AA-----AAAAAAAA----------------AAAA--AAA--------------------CA----------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.10200100000000010000
...........................................................................................................................................................................................AAA---AA-----AAAAAAAA----------------AAAA--AAA--------------------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000000000001000
..................................................................................................................................................................................................A-----AAAAAAAA----------------AAAA--AAA--------------------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.05100000000001000000
.........................................................................................................................................................................................AAAAA---AA-----AAAAAAAA----------------AAAA--AAA--------------------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05110000000000000000
.....................................................................................................................................................................................CCA-AAAAA---AA-----AAAAAAAA----------------AAAA--AAA--------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000000000001000
................................................................................................................................................................................A----CCA-AAAAA---AA-----AAAAAAAA----------------A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000000000001000
......................................................................................................................................................................................CA-AAAAA---AA-----AAAAAAAA----------------A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000000000001000
droSec2
AGCCTGGTGGCCAACAACCAGCTGAACACCT------ATGCCGGCAATGCTTTTGGGTAACATTCTCAGACCGCCCTG-----------C-------------------------------CCCAT----------TCAAAAA---TACCA-------------------AACCAAA----CAAA-AAAA---AA------------AAAAAAAAAAAAAA--AAAAAAAAA--------------------AAAAAAAAAAAACCCAAGCAATCCCTCCCAAAAACAA----------------------AACCAACCAA-----------------------CACATC--------CCAAA-------------------------AAACCA------------------------AAA---------AAAAATTACAAAATA-----CA-------------------------------------------------AAAACCC--AACCG-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTCGACTC-------------------------------------------------------TCGAT-TCCCACG----------------------A----CATC--CCC----ACCATGATC-------ACCAC----ATCT-CCA-------CATCA-----------------------C---C------------------ATCGACCACCAC------T------------------------------------TCACCA------CCATTT------CGGTTAGCTCGTCCAGTGGCAAT---------GTGGGAAATGCGAATGGAGGCGGC---------GGCGCCGTAACCATCTACASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................AAA---AA------------AAAAAAAAAAAAAA--AA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21201.402828000
..................................................................................................................................................................................................A------------AAAAAAAAAAAAAA--AAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19201.102222000
........................................................................................................................................................................................A-AAAA---AA------------AAAAAAAAAAAAAA--AAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.751515000
........................................................................................................................................................................................A-AAAA---AA------------AAAAAAAAAAAAAA--AAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.3577000
..........................................................................................................................................................................................AAAA---AA------------AAAAAAAAAAAAAA--AAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1530030
.......................................................................................................................................................................................AA-AAAA---AA------------AAAAAAAAAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510010
.......................................................................................................................................................................................AA-AAAA---AA------------AAAAAAAAAAAAAA--AAAAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.0510100
......................................................................................................................................................................................................................AAAAAAA--AAAAAAAAA--------------------AAAAAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510001
....................................................................................................................................................................................................................AAAAAAAAA--AAAAAAAAA--------------------AAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510001
.....................................................................................................................................................................................................................AAAAAAAA--AAAAAAAAA--------------------AAAAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510001
.......................................................................................................................................................................................AA-AAAA---AA------------AAAAAAAAAAAAAA--AAAAAAAAA--------------------AAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................34200.0510010
........................................................................................................................................................................................A-AAAA---AA------------AAAAAAAAAAAAAA--AAAAAAAAA--------------------AAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................34200.0510010
.......................................................................................................................................................................................................................AAAAAA--AAAAAAAAA--------------------AAAAAAAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510001
..........................................................................................................................................................................................AAAA---AA------------AAAAAAAAAAAAAA--AAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510010
dm3
AGCCTGGTGGCCAACAACCAGCTGAACACCT------ATGCCGGCAATGCTTTTGGGTAACATTCTCAGACCGCCCTG-----------C-------------------------------CCCAT----------TCAAAAA---TACCA-------------------AACCAAA----CCA-AAAAA---AA--------------------------------A--AAA--------------------CA----------CCAAGCAATCCCTCCCAAAAACAA----------------------AACCAA---------------------------CACATC--------CCAAG-------------------------AAACCAA--AACCAAAAAAAAAAAAA------------ACAAAAA---TACAAAATA-----CA-------------------------------------------------AAAACCC--AACCG-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTCGACTC-------------------------------------------------------TCGAT-TCCCACG----------------------A----CATC--CCC----ACCATGATC-------ACCAC----ATCT-CCA-------CATCA-----------------------C---C------------------ATCGACCACCAC------T------------------------------------TCACCA------CCATTT------CGGTTAGCTCGTCCAGTGGCAAT---------GTGGGAAATGCGAATGGAGGCGGC---------GGCGCCGTAACCATCTACASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACCC--AACCG-AGCGCGCACAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGAAATGCGAATGGA..................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGAAATGCGAATGGAGGCGG.............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------GTGGGAAATGCGAATGGAGGC...............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAA------------ACAAAAA---TACAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGAATGGAGGCGGC---------GGC................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................................ATGCCGGCAATGCTTTTGGGTAACATTCTCAGACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3511.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGAGGCGGC---------GGCGCCGTAACC.......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACTC-------------------------------------------------------TCGAT-TCCCACG----------------------A----CATC--CCC----..............................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGTGGCAAT---------GTGGGA..............................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAA------------ACAAAAA---TACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAA------------ACAAAAA---TACAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................CAAA----CCA-AAAAA---AA--------------------------------A--AAA--------------------CA----------C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAA------------ACAAAAA---.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.3060000000000000000000000000000000000030000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAA------------ACAAAAA---TACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAA------------ACAAAAA---.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................CA-AAAAA---AA--------------------------------A--AAA--------------------CA----------CCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CCAA--AACCAAAAAAAAAAAAA------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................AACCAA--AACCAAAAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19100.1010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CAA--AACCAAAAAAAAAAAAA------------A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
......................................................................................................................................................................................CA-AAAAA---AA--------------------------------A--AAA--------------------CA----------CCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................ACCAAA----CCA-AAAAA---AA--------------------------------A--AAA--------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGCCTGGTGGCCAACAACCAGCTGAACACCT------ATGCCGGCAATGCTTTTGGGTAACATTCTCAGACCGCCCTG-----------C-------------------------------CCCCT----------TCAAAAA---TACCAAA-------------------------------------AAAA---AAAAAAAAAAA----------------AAAA--AATC------------------AAACC----------AAGAAACCCCTCCCAAAAACAA----------------------AACAAA---------------------------CACATC--------CCAAAAAAAAAAACCAAAAAAAA------------------------------------------------T---AAT-------TA-----CA-------------------------------------------------AAAACCC--AACCG-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTCGACTC-------------------------------------------------------TCGAT-TCCCACG----------------------A----CATC--CCC----ACCATGATC-------ACCAC----ATCT-CCA-------CATCA-----------------------C---C------------------ATCGACCACCAC------T------------------------------------TCACCA------CCATTT------CGGTTAGCTCGTCCAGTGGCAAT---------GTGGGAAATGCGAATGGAGGCGGC---------GGCGCCGTAACCATCTACASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC--CCC----ACCATGATC-------ACCAC----.....................................................................................................................................................................................................................................2011.0010100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTCTAGTTACTACCCT-CGTTCTCTCG......................................................................................................................................................................................................................................................................................................................................................................................2911.0011000000
......................................TGCCGGCAATGCTTTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.........................................................................................................................................CAAAAA---TACCAAA-------------------------------------AAAA---AA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310001000
droYak3
AGCCTGGTGGCCAACAACCAGCTGAACACCT------ATGCCGGCAATGCTTTTGGGTAACATTCTCAGACCGCCCTG-----------C-------------------------------CCCAT----------TCAAAAA---TACCAAA-------------------------------------AAAA---AAA-AAAAAAA----------------AAAA--AATT------------------AAACC----------AAGAAACCCCTCCCAAAAACAA----------------------AACCAA---------------------------CACATC--------CCAAAA----AAACCAAAAAAAAAAATAAGAAACCAA--AACCAAAA-----------------------ACAA----------ATA-----CA-------------------------------------------------AAAACCC--AACCG-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTCGACTC-------------------------------------------------------TCGAT-TCCCACG----------------------A----CATC--CCC----ACCATGATC-------ACCAC----ATCT-CCA-------CATCA-----------------------C---C------------------ATCGACCACCAC------T------------------------------------TCACCA------CCATTT------CGGTTAGCTCGTCCAGTGGCAAT---------GTGGGAAATGCGAATGGAGGCGGC---------GGCGCCGTTACCATCTACASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................TGAACACCT------ATGCCGGCAATGCTTTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.00330000000000
.....................................................................................................................................................CAAA-------------------------------------AAAA---AAA-AAAAAAA----------------AAAA--AA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.10202000000000
.....................................................................................................................................................CAAA-------------------------------------AAAA---AAA-AAAAAAA----------------AA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10200200000000
........................................................................................................................................................A-------------------------------------AAAA---AAA-AAAAAAA----------------AAAA--AAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000000000
....................................................................................................................................................CCAAA-------------------------------------AAAA---AAA-AAAAAAA----------------AAAA--AA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100100000000
....................................................................................................................................................CCAAA-------------------------------------AAAA---AAA-AAAAAAA----------------A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05110000000000
droEug1
AGCCTGGTGGCCAACAACCAGCTGAACACCT------ATGCCGGCAATGCTTTTGGGTAACATTCTCAGACCGCCCTG-----------C-------------------------------CCCAT----------TA----------------------------------------------ACTAAAAA-------------------------AAAAACAAA--------AAAAAAAATAATATGA------------A---------ACCCCTCCCGAAAACAA----------------------AACCAACACAAACA-----------------------TC--------CC-------------------------------------------------------CAAAAACA-----AA---AAAA-----------------------------------------------------------------AAACCC--AACCG-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTCGACTC-------------------------------------------------------TCGAT-TCCCACG----------------------A----CATC--CCA----ACCATGATC-------ACCAC----ATCT-CCA-------CATCA-----------------------C---C------------------ATCGCCCACCAC------T------------------------------------TCACCA------CCATTT------CGGTTAGCTCGTCCAGTGGCAAT---------GTGGGAAATGCGAATGGAGGCGGC---------GGTGCCGTAACCATCTACASizeHit CountTotal NormTotal
No Reads
droBia1
AGCCTGGTGGCCAACAACCAGCTGAACACCT------ATGCCGGCAATGCTTTTGGGTAACATTCTCAGACCGCCCTG-----------C-------------------------------CCCAT----------AAAA---AAA-------AA------------------------------------------------------------------------A--AAAC------------------AAACC---AAA---------ACCCCTCCCGAAAACAA----------------------A--CAACACCAACA-----------------------TC--------CCAAAA------------------------------------------------------------------------A------------------AA-AC-----------------------------------CAA---AAAACCC--AACCG-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTCGACTCT----C-----GACTC---------------------------------------TCGAT-TCCCACG----------------------A----CATC--CCA----ACCATGATC-------ACCAC----ATCT-CCACAA----CATCA-----------------------C---C------------------ATCGACCACCTC------A------------------------------------TCACCA------CCATTT------CGGTTAGCTCGTCCAGTGGCAAT---------GTGGGGAATGCGAATGGAGGCGGC---------GGTGCCGTAACCATCTACASizeHit CountTotal NormTotal
No Reads
droTak1
AGCCTGGTGGCCAACAACCAGCTGAACACCT------ATGCCGGCAATGCTTTTGGGTAACATTCTCAGACCGCCCTG-----------C-------------------------------CCCAT----------AAAA---AAA-------AA-----------------------------------------------------ATATATATA--------------------------TATATGAAA--ACCA--AAA---------ACCCCTCCCGAAAACAA----------------------AACCAACACAAACA-----------------------TC--------CCAAAA-----------------------------------------------------------------------AA------------------AA-AC-----------------------------------CAAATAAAAACCC--AACCG-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTCGACTC-------------------------------------------------------TCGAT-TCCCACG----------------------A----CATC--CCA----ACCATGATC-------ACCAC----ATCT-CCA-------CATCA-----------------------C---C------------------ATCGACCACCAC------T------------------------------------TCACCA------CCATTT------CGGTTAGCTCGTCCAGTGGCAAT---------GTGGGAAATGCGAATGGAGGCGGC---------GGTGCTGTAACCATCTACASizeHit CountTotal NormTotal
No Reads
droEle1
AGCCTGGTGGCCAACAACCAGCTGAACACCT------ATGCCGGCAACGCTTTTGGGTAACATTCTCAGACCGCCCTG-----------A-------------------------------CCCAT----------TAAAAAA---TACCAAA-------------------------------------AAAAACCAA-----------------------------------------------------AAACCA--AAA---------ACCCCTCCCGAAAACAAAACA-A-AAACCAAA-----------AACACCAACAT----------------------TC--------CCAAA-------------------------AAACCAAAAAACCAAAAAAAAAAAAA-----------------------------------------------------A-----A---------------------------AAAACCCAAAACCGAAGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTCGACTC-------------------------------------------------------TCGAT-TCCCACG----------------------A----CATC--CCA-ACAACCATGATC-------ACCAC----ATCT-CCA-------CATGACCACCAAC-CA---TCA-----ACCA---------TCAACC-----ATCGACCA----------T------------------------------------CGACCA------CCATTT-----CCGGTTAGCTCGTCCAGTGGCAAT---------GTGGGAAATGCGAATGGAGGCGGC---------GGTGCCGTAACCATCTACASizeHit CountTotal NormTotal
No Reads
droRho1
AGCCTGGTGGCCAACAACCAGCTGAACACCT------ATGCCGGCAACGCTTTTGGGTAACATTCTCAGACCGCCCTG-----------C-------------------------------CCCAT----------AAAA---AAA-------AA-----------------------------------------------------------------------------------------------------CA--AAA---------ACCCCTCCCGAAAACAAAAAAATAAAACCAA------------AACACCAACAT----------------------TC--------CCAAA-----------------------------------------------------------------------------------------AAAAAAAAAAAAAAAC-----AA--------------------------AAACCCC--AACCG-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTCGACTC-------------------------------------------------------TCGAT-TCCCACG----------------------A----CATC--CCA-ACAACCATGATC-------ACCAC----ATCT-CCA-------CACGA-----------------------C---C------------------ATCGACCACCAC------T------------------------------------TCACCA------CCATTT-----CCGGTTAGCTCGTCCAGTGGCAAT---------GTGGGCAATGCGAATGGAGGCGGC---------GGTGCCGTAACCATCTACASizeHit CountTotal NormTotal
No Reads
droFic1
AGCCTGGTGGCCAACAACCAGCTGAACACCT------ATGCCGGCAACGCTTTTGGGTAACATTCTCAGACCGCCCTG-----------C-------------------------------CCCAT----------GAAA--------CCAAAAAG-----------AAAATCCAAA------------------------------------------------------------------AATATG-----------AAA---------ACCCCTCCCGAAAACAG----------------------AAC----ACAAACATCCCAAACCAAACAAAAAA------CAAAAACC---AA------------A-------------------------------AA------CCAAAACA-----AA---AAAA-----------------------------------------------------------------AAACCA--AATCG-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTCGACTC-------------------------------------------------------TCGAT-TCCCACG----------------------A----CATC--CCG---AACCATGATC-------ACCAC----ATCT-CCA-------CTTCA-----------------------C---C------------------ATCGACCACCACTCACCATCGACCACGACTTCAC-----------------CACTTCACCACCATGACCATTT-----CCGGTTAGCTCGTCCAGTGGCAAT---------GTGGGGAATGCGAACGGAGGCGGC---------GGTGCCGTGACCATCTACASizeHit CountTotal NormTotal
No Reads
droKik1
AGCCTGGTGGCCAACAATCAGCTGAACACCT------ATGCCGGCAACGCTTTTGGGTAACATTCTCAGACAGCCCTG-----------A-------------------------------CCCTA---------CAAAA---AAA-------AAC-----------A----------------------------------------AAAT-TTTC--------------------------TATAT-----------------------------------------------AAAACC-----------------ACATACCT----------------------TC--------CC-----------------------------------------------------------------------------------------CCAAAAAAATCAAAAAAACAAAACAA---------------------------AACCCA--AAACG-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTCGACTC-------------------------------------------------------TCGAT-ACCCATG----------------------A----CATC--CCC---AATCATGATC-------ATCAC-ATCATCT-CCAACC-----------ACCAAACCA------------C---C------ATGA---------------ACCAC------A------------------------------------TCACCA------CCATTT------CGGTTAGCTCGTCCAGTGGCAAT---------GTGGGAAATGCGAATGGAGGCGGCGGCGGCGGAGGTGCCGTTACCATCTATASizeHit CountTotal NormTotal
No Reads
droAna3
AGCCTGGTGGCCAACAACCAGCTGAACACCT------ATGCCGGCAACGCTTTTGGGTAACATTCTCAGACCGCCCTG-----------C-------------------------------CCCCC----------CAAAAAA---AAAAA-------------------ATTCAAA----TTTA-AAAA---AA------------AGTATATATTAAAAACAAAAA--AATT------------------AAATTAAAAAA---------ACCTATCCCAAGAAAAA----------------------AAAAA----------------------------------------CC---AA------------A-------------------------------AA------CCAAAACACCAACACAAATACAACAAATTTTCCCCCA-------------------------------------------------AAATCCA--AAACG-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTCCAC-----------------------------------------------------------GAA----------CACACCACCACCAACCATCGA----CATC--CCA----ATCATGACC-------ATCATCTTCATCT-CCAACTCCGA-----CCTCC--ATCATCAT------CATCATC------------------ATCCATCGCCAT------T------------------------------------T----G------CCATTT------CGCTTAGCACCTCCAGTGGCAAT---------GTGGGGAATACAAATGGAGGCGGC---GCCGGTGGTGCTGTTACCATCTACASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGAATACAAATGGAGGC...............................1912.002020000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGTGGTGCTGTTACC.......1811.001010000
..........................................GGCAACGCTTTTGGGTAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
........................................................................................................................................................................................................................................................................................................................AAAA----------------------------------------CC---AA------------A-------------------------------AA------CCAAAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.201010000
...............................................................................................................................................................................................................................................................................................AA----------------------AAAAA----------------------------------------CC---AA------------A-------------------------------AA------CCAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20130.081010000
droBip1
AGCCTGGTGGCCAACAACCAGCTGAACACCT------ATGCCGGCAACGCTTTTGGGTAACATTCTCAGACCGCCCTG-----------C-------------------------------CCCCT----------CCAAAAT---TT------------------------------------AATAAAAAAAATTAAA-AAAAAAA----------------GAAT--AATT------------------AAACTA--AAA---------ACCTATCCCGAAAAAAA-AGA-T-AAACCAAAAGCCCAAC--CAACACCAAC--------------------------------------------------------------------------------------------------------ACAAATAC--CAAAATGTCC-----------------------------------CCCC---------------AAATCC--AAACG-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCT-CGTTCTCTCGTTCTCTC---------------------------------------------------------------------CACGAACACAC------CAACCATCGACAACCATC--CCA----ATCATGACC-------ACCATCTTCATCT-CCAACTCCGA-----ACACC--ATCA------------C---C---A---TC---------ATCG----CC--------A------------------------------------TCATTG------CCATTT------CGCTTAGCACCTCCAGTGGCAAT---------GTGGGAAATGGGAATGGAGGCGGC---GGCGGCGGTGCCGTTACCATCTACASizeHit CountTotal NormTotal
No Reads
dp5
ACTCTGGTGGCCAATAACCAACTAAACACCT------ATGCCGGCAATGCTTTTGGGTAACATTCTCAGACCGCC-TCCTCTACTCCTCTACTCTACTCCCCCCAACCACCCTGAAAACACCCCCTCAAACCCAAC----C--AAA-------AAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------------------AA---AAC-------------------------------------AAAACCCGCACCCCAA--GTCCC----------------AAA-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCTCCGTTCTCTCGTTCTCTCAACTCGCTCTCAT---G-CTCTCGTGTCTCCAACTCCGAACCGACAACACCGACAACCAATCCAT-CCACATG----------------------A----TCTC--CTC----CTCATCATC-------AACA---------------------------------------------ACATCATCATCCACATCAAC-CACAT--CGA---------------------------------------------------------------CATTT------TGCTTAGCTCCTCCAGTGGCAAT---------GTGGGAAATGGGAATGGAGGC------------AATGCCGTTACCATCTATASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAAT---------GTGGGAAATGGGAATGGA..................................2512.0020000000200
droPer2
ACTCTGGTGGCCAATAACCAACTAAACACCT------ATGCCGGCAATGCTTTTGGGTAACATTCTCAGACCGCC-TCCTCTACTCCTCTACTCTACTCCCCACAACCACCCTGAAAACACCCCCTCAAACCCAAC----C--AAA-------AAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------AAAACA-----AA---AAC-------------------------------------AAAACCCGCACCCCAA--GTCCC----------------AAA-AGCGCGCACAACGTTCC--TAACTCTAGTTACTACCCTCCGTTCTCTCGTTCTCTCAACTCGCTCTCAT---G-CTCTCGTGTCTCCAACTCCGAACCGACAACACCGACAACCAATCCAT-CCACATG----------------------A----TCTC--CTC----CTCATCATC-------AACA---------------------------------------------ACATCATCATCCACATCAAC-CACAT--CGA---------------------------------------------------------------CATTT------TGCTTAGCTCCTCCAGTGGCAAT---------GTGGGAAATGGGAATGGAGGC------------AATGCCGTTACCATCTATASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AGCAA---------CAACAA------------------------------------------------------------------------------------------------------------------------------CACCAACAACAACAACGTCAGCAGACTCATCACCATGCAACGCCAA-------------------------ACAAGCAAC--------AACGCCAACATCACAA------------T---------CATCATCACAACAACAA----------------------CAACAAC-------------------------------------------AA------------C-------------------------------AACAGCAACAATAACA-----AC---AACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAAATCAAGCAGCCAT---------CGAGGGCGTGCCTCGGCCGCC------------ACACCAAATGCTGCCGCCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................CAACAAC-------------------------------------------AA------------C-------------------------------AACAGCAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10200020
................................................................................................................................................................................................................................................................................................A----------------------CAACAAC-------------------------------------------AA------------C-------------------------------AACAGCAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10200020
..........................................................................................................................................................................................................................................................................................................................CAAC-------------------------------------------AA------------C-------------------------------AACAGCAACAATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000
droVir3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCA-AGCGCGCACATTGCTCC--TAACTCTAGTTACTACCCT-CGTTC--TTGTTCTCTCAACTC-------------------------------------------------------GTTCT-T----------------------------------GTC--CCC----ACTATGATCCACGCTTACCAC----ACTTACCG-CTTCGC-----GCCCC--C---------------------CCCACGTCAAC-G--AT--CTA---------------------------------------------------------------CACTTAACGTGC-TGCAGCTCGTCGGGCGGCGGTGGCCAAACCGTTGGCAATGTGA---GCGGCAGT---------GGAGCCGTTACCATCTATASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
ACGCTCGTGGCCAACAATCAGCTGAACACGTTTCACAATGCCGGCAATGCTTTTGGGTAATGTTCGCAGACCCACTTCTTGAACCCCTCCTCCCCAGC-----------------------CCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACTCCCATTGCTCC----------------ACA-AGCGCGCACAAAGCTCCTCTAACTCTCGTTACTACCCT-CGTTCTCTTGTTCTCTCAACTCACACACACAAACACAC---------------------------------------TCGAACACCTACG----------------------C----CTTC--ACA-----C---------------------------------------------------------------------------------------------------------------------------ACACACACACACACACACATACGAATACCCTGAACAC-----GCAC-TGCAGCACGTCGAGCGGCGGCGGCCAAACCGTTGGCAATGTGA---GCGGCAGC---------GGCGCCGTTACCATCTACASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................CCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACTCCCATTGCTCC----------------ACA-.......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
droGri2
ACCCTGGTGGCCAATAATCAGCTCAACACGTTTCACAATGCCGGCAATGCTTTTGGGTAATGTTCTCAGACAGCCCTC-----------C-------------------------------TTCC----------------------------------------------------------------------------------------------------------------------------------------------------CCCCTCTCTAAAAAA--------------------------------------------------------------CAAAAA--CCAAA-----------------------------------------------------------------------------------------AAAAAA-----AAAACAAAACAG--------------------------A--TATA--CACCC-AGCGCGCAGAATGCTCC--TAACTCTCGTTACTACCCT-CGTTC--TTGTTCTCTCAACTC---------------------------------------------------------G-T-TCTCGCC----------------------C----CACACCCCACACAAATGTGATC-----------C----ATCC--------------CA---CCAAC-CA--ATCAACAAC----------AAATCA-----------------------------------------------------------------ACCA---------------------ACAGCTCCTCCAGTGGCGGTGGCCAAACGGTTGGCAATGTGA---GCGGCAGT---------GGTGCCGTTACCATCTATASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 10:58 PM