ID:

dsi_20351

Coordinate:

3l:11387242-11387391 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3l_11387103_11387241_+]; CDS [3l_11387103_11387241_+]; intron [3l_11387242_11387745_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CCCATCATCGGAATGCTGGCGAAGCCCCTCTTCGGATACATTGCGGACCGGTAAGAAAGATGATCCCTCTGACTTATCTGTCCATGTAGATCCCATTTCAAAGACCCAAACACGTTTGTTTATCACACTTTATTTAATTTTTTAAACGCAACGTCCTACTCAGCAAAATGTTACGTCTTTTTGTGATAAGTTTTCAAGTGAGCTATACTCATAAAGTGTCTATGTATGCATATCCCCACTGATTTGAAGG ************************************************....((((...((((.....(((......)))......))))...)))).(((((......(((((((((((....................)))))).)))))..............(((((((......))))))).)))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR553486 Makindu_3 day-old ovaries	M023 head	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M025 embryo
...................CGAAGCCCCTCTTCGGATACATTGA..............................................................................................................................................................................................................	25	1	1	1.00	1	0	0	0	1	0	0
.................................GGATACATTGCGGAC..........................................................................................................................................................................................................	15	0	1	1.00	1	0	1	0	0	0	0
..........................................................................TATCTGTCCATGTAGATCCCG...........................................................................................................................................................	21	1	1	1.00	1	0	0	1	0	0	0
.....CATCGGAATGCTGGCGAAGCC................................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0
......ATCGGAATGCTGGCGAAGCCC...............................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0
...............................TCAGATAAATAGCGGACCG........................................................................................................................................................................................................	19	3	7	0.14	1	0	0	0	0	0	1
............................................................................................................................................TTTAAACGCTACGTCCG.............................................................................................	17	2	8	0.13	1	0	0	0	0	1	0
.......................................ATTCTGGACCGGTCAGAAA................................................................................................................................................................................................	19	3	9	0.11	1	0	1	0	0	0	0
...................................................................................................................................................................................TTTGTGAGAAGTTTT........................................................	15	1	20	0.05	1	0	0	0	0	1	0

Anti-sense strand reads

GGGTAGTAGCCTTACGACCGCTTCGGGGAGAAGCCTATGTAACGCCTGGCCATTCTTTCTACTAGGGAGACTGAATAGACAGGTACATCTAGGGTAAAGTTTCTGGGTTTGTGCAAACAAATAGTGTGAAATAAATTAAAAAATTTGCGTTGCAGGATGAGTCGTTTTACAATGCAGAAAAACACTATTCAAAAGTTCACTCGATATGAGTATTTCACAGATACATACGTATAGGGGTGACTAAACTTCC ************************************************....((((...((((.....(((......)))......))))...)))).(((((......(((((((((((....................)))))).)))))..............(((((((......))))))).)))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	O001 Testis	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	M024 male body
..............................................................................................................................................ATTTGCGTTGCAGGATGA..........................................................................................	18	0	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................GTTGACTCGATATGGGTA......................................	18	2	2	0.50	1	1	0	0	0	0	0
...................................................................................................................................................CGTTGCAGGATGAGA........................................................................................	15	1	4	0.50	2	0	0	0	1	1	0
....................................................................................................................................AAATTAAAAAATATGCGTTGAA................................................................................................	22	2	2	0.50	1	0	0	1	0	0	0
.....................................................................................................................AAAATAGTGTGAAGTAAATT.................................................................................................................	20	2	4	0.25	1	1	0	0	0	0	0
............................................................ACTAGGCAGACTGAGTA.............................................................................................................................................................................	17	2	10	0.20	2	0	0	0	2	0	0
.................................................................................................................................................................................................GGTTGACTCGATATGGGTA......................................	19	3	16	0.19	3	3	0	0	0	0	0
....................................................................................................................................................................................................................................GCATAGGTGTGACTAAAATT..	20	3	6	0.17	1	1	0	0	0	0	0
..................................................................................................................................................CCGTTGCAGGATGGGACGT.....................................................................................	19	3	11	0.09	1	0	0	0	0	0	1
.....................................................................................CATCTAGGGTCACGCTTCT..................................................................................................................................................	19	3	15	0.07	1	0	0	0	0	1	0

Generated: 04/24/2015 at 03:49 AM