ID:

dsi_20319

Coordinate:

3r:10216080-10216225 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3r_10215853_10216079_-]; CDS [3r_10215853_10216079_-]; CDS [3r_10216226_10216358_-]; exon [3r_10216226_10216358_-]; intron [3r_10216080_10216225_-]

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------################################################## ACTGCAGCATGAAGATGGCAGCGAACCGGAAAAGTCTCTTAGATTAAAAGGTAAACCCAAATACGAACGACAAAATCTAAAGATAAGATCTAAAAGAAAAAAAATTAATTAAATGATTTTTTTTAATTTTCGCTAAAGAAAGAAGATTAAAAGAAGTTGTGGTGTTTGTAATACAGTAAACCCGTATTTTCCGCAGGTCAAATGGTTTACATGGAGAACTGGCGCATGATCATGTTTCTGGGTACT ************************************************........(((((((..........(((..((((...))))...)))...............(((((((((((((((((((..........)))))))))))))))))))(((..((((...))))...)))))))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	SRR553488 RT_0-2 hours eggs	M023 head	GSM343915 embryo	SRR618934 dsim w501 ovaries	SRR902009 testis	SRR553487 NRT_0-2 hours eggs
.................................................................................................................................................................................................................CATGGAGAACTGGCGCATGATCAT.............	24	0	1	1.00	1	1	0	0	0	0	0	0
.........................CAGGAAAAGTCTCTAAG............................................................................................................................................................................................................	17	2	12	0.25	3	0	2	0	0	0	0	1
.........................CAGGAAAAGTCTCTAAGCTT.........................................................................................................................................................................................................	20	3	10	0.20	2	0	1	1	0	0	0	0
.............................................................................................................................................................................................................GTTACTTGGAGAACTGTCGC.....................	20	3	6	0.17	1	0	0	0	1	0	0	0
......................................ATAGATTAAGAGGTAAAC..............................................................................................................................................................................................	18	2	7	0.14	1	0	0	1	0	0	0	0
................................................................................AGATCAGATCAAAAACAAAAAAAA..............................................................................................................................................	24	3	8	0.13	1	0	0	0	0	0	1	0
...........................GGAAAAGTCTCTAAG............................................................................................................................................................................................................	15	1	9	0.11	1	0	1	0	0	0	0	0
.........................CAGGAAAAGTCTCTAA.............................................................................................................................................................................................................	16	2	20	0.10	2	0	2	0	0	0	0	0
...................................................................................TTGGATCTAAAAGAAAAAAATT.............................................................................................................................................	22	3	10	0.10	1	0	0	0	0	1	0	0
................................................................................AGATAAGGTCTACAAGAC....................................................................................................................................................	18	3	20	0.05	1	0	0	1	0	0	0	0
..................................................................ACGACAGAATCTAAA.....................................................................................................................................................................	15	1	20	0.05	1	0	0	0	0	1	0	0

Anti-sense strand reads

TGACGTCGTACTTCTACCGTCGCTTGGCCTTTTCAGAGAATCTAATTTTCCATTTGGGTTTATGCTTGCTGTTTTAGATTTCTATTCTAGATTTTCTTTTTTTTAATTAATTTACTAAAAAAAATTAAAAGCGATTTCTTTCTTCTAATTTTCTTCAACACCACAAACATTATGTCATTTGGGCATAAAAGGCGTCCAGTTTACCAAATGTACCTCTTGACCGCGTACTAGTACAAAGACCCATGA ************************************************........(((((((..........(((..((((...))))...)))...............(((((((((((((((((((..........)))))))))))))))))))(((..((((...))))...)))))))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M023 head	O001 Testis	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo
................................................................CCTGCTGTCTTAGATTT.....................................................................................................................................................................	17	2	9	7.56	68	68	0	0	0	0	0
.................................................................CTGCTGTCTTAGATTT.....................................................................................................................................................................	16	2	20	1.65	33	33	0	0	0	0	0
..................................................................TGCTGTCTTAGATTT.....................................................................................................................................................................	15	1	20	0.80	16	16	0	0	0	0	0
...............................................................GCCTGCTGTCTTAGATTT.....................................................................................................................................................................	18	2	4	0.25	1	1	0	0	0	0	0
.................................................................TTGCTGTCTTAGATTT.....................................................................................................................................................................	16	1	7	0.14	1	1	0	0	0	0	0
.....................................................................................................................AAAAAAATTAATGGCGATT..............................................................................................................	19	2	20	0.10	2	0	0	0	1	1	0
.............................................................ATGAATGCTGTCTTAGATTT.....................................................................................................................................................................	20	3	11	0.09	1	1	0	0	0	0	0
..............................................................................................................................................................................CCATTCGGGCATAAAAGTC.....................................................	19	3	13	0.08	1	0	1	0	0	0	0
...............................................................GCCTGCTGTCTTAGATTTA....................................................................................................................................................................	19	3	16	0.06	1	1	0	0	0	0	0
.....................................................................................................................AAAAAATTGAAAAGCGATT..............................................................................................................	19	2	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................TTCAACACCACAAAAAAT...........................................................................	18	2	20	0.05	1	0	0	1	0	0	0
..........................................................TGTATCCTTGCTGTTTGAG.........................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1

Generated: 04/24/2015 at 10:38 AM