ID:

dsi_20318

 Coordinate:

3r:5168867-5169092 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AAAACGAGTGTGCGATTGTGTGTGTGTGTGCGTGTTAGAATTGTATTAGCGTTGGTATCAGTATAAGTACAATTCTAAGCAGAATCGCGTTTTTTGTTGGTTTTGTTTTTTAATTGGAACCAAGAATATCGAAAAAAAAAACAAGCAGATTCCAAGAGCGTGTTACGTGGCCGTCTTTCCAATTGGACAACTGACCAGCTGAGCTGCTGAAAACAGTTCTAAACGGAGACTTGACTACTGAAACATTGAAATACATTGATAATTTAATAATTCCAGGCAAAATCAACTGTAAGAAACCAAAATTCTAGTGCAAAACAAATTAAGAA
************************************************************************************************************************************************************************************************************((..........(((....................)))...........)).********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 M025
embryo
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR902009
testis
............................................................................................................................................................................................................TGCTGAAAACAGTTCTAAACGGAGACT............................................................................................... 27 0 1 2.00 2 1 0 0 0 0 0 1 0 0
.................................................................................................................TTGGAACCAAGAATATCGAAAAAACA........................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGACCAGCTGAGCTGCTGAAAACAGT............................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0
............................................ATTAGCGTTGGTATCAGT........................................................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................CAGTTCTAAACGGAGACTTGAC........................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................ATTGATAGTTCAATAATTCCAGGCAAA............................................. 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TCCAATTGGACAACTGACCAGCTGAG........................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................................AAACGGAGACTTGACTACTGAAACA................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.......................................................................................................TGTTTTGTAATCGGAACC............................................................................................................................................................................................................. 18 2 2 1.00 2 0 0 0 2 0 0 0 0 0
...........................................................................................................................................................................................................................................TACTGAAACATTGAAATACAT...................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
............................................ATTAGCGTTGGTATCAGTATAAGT.................................................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................................................................................CCAGGCAAAATCAACTGTAAGAAAC............................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............GATTGTGTGTGTGTGTGCG...................................................................................................................................................................................................................................................................................................... 19 0 3 1.00 3 0 0 3 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................AACTGTAAGAAACCAAAATTCTAGTGC............... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TCAACTGTAAGAAACCAAAATTCTAGTG................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TCAACTGTAAGAAACCAAAATTCTAGTGC............... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................AATTGTATTGGCGTTGGTATCT.......................................................................................................................................................................................................................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................................................................................................AATCAACTGTAAGAAACC............................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................GGCAAAATCAACTGTAAGAA............................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................ATTCTAGTGCAAAACATCTGA.... 21 3 2 0.50 1 0 0 0 0 0 0 1 0 0
................TGTGTGTGTGTGTGCGTG.................................................................................................................................................................................................................................................................................................... 18 0 20 0.25 5 0 0 0 0 0 5 0 0 0
..........TGCGATTGTGTGTGTGTGTG........................................................................................................................................................................................................................................................................................................ 20 0 6 0.17 1 0 0 0 0 0 1 0 0 0
.......................................................................................................TGTTTTCTAATCGGAACC............................................................................................................................................................................................................. 18 2 8 0.13 1 0 0 0 1 0 0 0 0 0
........................................................................................................................CAGGAATAACGAAAAAAAAAA......................................................................................................................................................................................... 21 2 10 0.10 1 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................AACTCACTAGCTGAGCT......................................................................................................................... 17 2 11 0.09 1 0 0 0 0 0 1 0 0 0
......................................................................AACTCTAAGCAGAAT................................................................................................................................................................................................................................................. 15 1 12 0.08 1 0 0 0 0 0 1 0 0 0
......................................................................AACTCTAAGCAGGATCGCC............................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................................TTGAAATACAGTGAT.................................................................. 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

TTTTGCTCACACGCTAACACACACACACACGCACAATCTTAACATAATCGCAACCATAGTCATATTCATGTTAAGATTCGTCTTAGCGCAAAAAACAACCAAAACAAAAAATTAACCTTGGTTCTTATAGCTTTTTTTTTTGTTCGTCTAAGGTTCTCGCACAATGCACCGGCAGAAAGGTTAACCTGTTGACTGGTCGACTCGACGACTTTTGTCAAGATTTGCCTCTGAACTGATGACTTTGTAACTTTATGTAACTATTAAATTATTAAGGTCCGTTTTAGTTGACATTCTTTGGTTTTAAGATCACGTTTTGTTTAATTCTT
**********************************************************************((..........(((....................)))...........)).************************************************************************************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M025
embryo
...............................................................................................................................................................AACAATGCACCGGCAGAAAG................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................TTTAGGTCCGTTTTAGTTG....................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................ATGGTTAACCTGATGACTGGA................................................................................................................................. 21 3 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................................................................TTGTTCGTCTAAGGTTCTCGC...................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................CGACAGAAAGGTTAACCTGTT........................................................................................................................................ 21 1 1 1.00 1 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................TTGTCAAGATTTGCCGCTGAA.............................................................................................. 21 1 2 0.50 1 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................TTAAACTGATAACTTTGTAACTTT........................................................................... 24 3 3 0.33 1 0 0 1 0 0 0 0 0
..............................................................................................................................ATCGCTTTTTCTTTTGTTCGT................................................................................................................................................................................... 21 2 3 0.33 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................AAGATTTGCCTCGGAACT............................................................................................ 18 1 8 0.25 2 0 1 0 0 0 1 0 0
................................................................................................................................................CGTCTAAGGTGCTCG....................................................................................................................................................................... 15 1 5 0.20 1 0 0 0 0 0 1 0 0
.........................................................................................................AAAAAAATAACCTTGCTTCTT........................................................................................................................................................................................................ 21 2 5 0.20 1 0 1 0 0 0 0 0 0
..............................................................................................................................ATAGCTTTTTTTTTT......................................................................................................................................................................................... 15 0 9 0.11 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................................AGGTTAACTTGATGACTGGA................................................................................................................................. 20 3 11 0.09 1 0 0 1 0 0 0 0 0
......................................................................................................................TGGTTCTTATAGTTTT................................................................................................................................................................................................ 16 1 15 0.07 1 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................ACCACATTTGTCAAGATTTT...................................................................................................... 20 3 16 0.06 1 0 0 0 0 1 0 0 0
............................................................................................................AACTTAAGCTTGGTTCTT........................................................................................................................................................................................................ 18 2 16 0.06 1 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................ATAGATTTGCCTCGGAACT............................................................................................ 19 3 17 0.06 1 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................................................TAATGTCCGCTTTAGATGA...................................... 19 3 17 0.06 1 0 0 0 0 0 0 0 1
................................................................................................................................................................................AAGGTGAACCTGTTG....................................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0
.........................................................................................................GAAAAATTAAGCTAGGTTCT......................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 1 0 0
...............................................................................................................................................TCTTCTAGGGTTCTCGC...................................................................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0
................................................................................................................TAAGCTTGGTTCTAATTGC................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:5168817-5169142 - dsi_20318 AAAAC-G-------------------------------AGTGT--GCGA---------TTGTG--T-----------------GTGTGTGTGCGTGTTAGAATTGTATTAGCGT---TGGTAT------CAGTATAAGTACAATT-CTAAGCAGAATCGCGTTTTT-TGTTGGTTTTGTTTTTTAATTGGAACCAAGAATATCGAAAAAAAAAA-C--AAGCAGATTCCAAGAGCGTGTTACGTGGCCGTC--------TT---------------TCCA------------------------------------ATTGGAC-AA--------------------C----T-GAC--CA------------GCTGAGCTGCTGAAAA--CA----GTTCT----AAACGGAGA--------------------------------C-----------------------TT-GACTACTGAAA--CATTGAAATACATTGATA-------ATTTAATAATTCCAGGCAAAAT------------------CA----------------ACTGTA------------------------------------------------A--GAAA--CCAAAATTCTAGTGCAAAACAAA---TTAAGAA--
droSec2 scaffold_27:601906-602229 - AAAAC-G-------------------------------AGTGT--GCGA---------TTGTG--T-T------------T--GTGTGCGTGCGTGTTAGAATTGTATTAGCGT---TGGTAA------CAGTATAAGTACAAGT-CTAAGCAGAATCGCGTTTTT-TGTTGGTTTTGTTTTTTAATTGGAACCAAGAATATCGAAAA----AA-C--AAGCAGATTCCAAGAGCGTGTTACGTGGCCGTC--------TT---------------TCCA------------------------------------ATTGGAC-AA--------------------C----T-GAC--CA------------GCTGAGCTGCTGAAAA--CA----GTTCT----AAACGGAGA--------------------------------C-----------------------TT-GACTACTGAAA--CATTGAAATACATTGATA-------ATTTAATAATTCCAGGCAAAAT------------------CA----------------ACTGTA------------------------------------------------A--GAAA--CCAAAATTCTAGTGCAAAACAAA---TTAAGAA--
dm3 chr3R:16135362-16135675 + AAAAC-A-------------------------------AGTGT--GCGA---------GTGTG--T-----------------GTGTGTGTGCGTGTTAGAATTATATTAGAGT---TGGTAT------CAGTATAAGTACAATT-CTAAGCAGAATCGCGCT--TTTT--TT----G-TCACTAATTGGAACCAAGAATATCGAAAA----AA-C--GAGCAGATTCCAAGAGCGTGTTACGTGGCCGTC--------TT---------------TCCA------------------------------------ATTGGAC-AA--------------------C----T-GAC--CA------------GCTGAGCTGCTGAAAA--CA----GTTCT----AATCGGAGA--------------------------------C-----------------------TT-GACTATTGAAA--CATTAAAATACAATCATA-------ATTTAATAATTCCAGGCAAAAT------------------CA----------------ACTGTA------------------------------------------------A--GAAA--CCAAAATTCTAGTGCGAAACAAA---TTAAGAA--
droEre2 scaffold_4770:5545209-5545519 - AAAAC-G-------------------------------AGTGT--GCGA---------GTGTG--T-------------------GTGTGTGCGTGTTAGAATTTTACTAGCGT---TGGTAT------CAGTATAAGTACAATT-CTAAGTAGAATCGTCTT--T-CTT-TT----G-TCACTAATTGGAACCGAAAA-ATCGAAAA-----A-C--AAGCGGATTCAAAGAGCGTGTTACGTGGCTGTC--------TT---------------TCCA------------------------------------ATTGGAC-AA--------------------C----T-GGT--CA------------GCTGAGCTGCTTAAAA--CA----GTTCT----AATCGGAGT--------------------------------T-----------------------TT-GACATCTGAAA--CATTGAAATGCAATGATA-------ATTAAATATTTCCAGGCAAAAT------------------CA----------------ACAGTG------------------------------------------------A-GGAAA--CCCAAATTCTAGCGCAAAACAAA---TTAAAAA--
droYak3 3R:4911886-4912191 + AAAAC-G-------------------------------TGTGT--GCGA---------GTGTG--T-------------------GTGTGTGCATGCTAGAATTGTACTAGCCT---TGGTAT------CAGTATAAGTACAATT-CTAAGTAGAATCGCCTT--T-CTT-TT----G-TCACTAATTGGAAACAAAAA-ATTCAGAA----AG-C--AAGCAGATTCGAAGAGCGTGTTACGTGGCCGTC--------TT---------------TCCG------------------------------------ATTGGAC-AA--------------------C----T-GAA--CA------------A-----CTGCTTAAAA--CA----GTTCT----AATCGGAGA--------------------------------C-----------------------TT-GACTTCTGAAA--CATTGAATTGCAATTATA-------ATTTAATATTTTCAGGCCAAAT------------------CA----------------ACAGTA------------------------------------------------A--GAAT--TCCAAATTATAGTGCAAAACAAA---TTGAAAA--
droEug1 scf7180000409804:2454805-2455128 + AAAAC-G---------------------------------TGT--AC---AA------GTGTT-----------------------TGTGTGCGTGTTAGAATTGTACTAGCAT---TTGCCT------TAGTATTAGTACTACTGGCTAGTAGAAGCCTTTT--T-CTTTTT--CCC-CAACTAATTGGTACCAAAAAAATAAAACAA---AA-AGAA--AAGATTCAAAGAGCGTGTTACGTGGCCGTA--------TT---------------TCCA------------------------------------ATTGGAC-CAACTCATATT-----TTGAG-C----T-GAC--CA------------GCTGAGCTACTGGAAAG-AG----CTTCT----AATCAGAAT--------------------------------G----------------TTCTCATTTTAATTAATC---AAT------------TCAAT-------ATTTTATATTTTTAGGCAAAAC------------------CA----------------AAAAAA-----------------------AAA-------------------------G-AA--ACAAAATTCTAGTGAAAAAACAA---ACACGAG--
droBia1 scf7180000302402:8949806-8950102 + AAACC-G-------------------------------TGTGT--GTGC---------GCGTG--TG---TGTGTAT--GTGTGCCCCTGTGCGTGTTAGAATCGTACTAGCTG---CGGCAT------TAGTGTTGGTAGCGCT-GCTAGTGGAAGCGCCTT--T-CTTTTT----G-CCACTAATTGGTACCAAAAA-ACACAGAG----A--AGAA--GAGATTTAAAGAGCGTGTTACGTGGCCGTC--------TTT-----------TATTCCA------------------------------------G-------------------------------------CT--CA------------GCTGAGCCACCAAGCA--CG----CTTCC----AATCAGAAT--------------------------------C-----------------------T--AATTA-----------------ACAGTTTTA-------CTCGGATATTTCCAGGCTAA---------------------------------------CAGC----------------------------------------------GAAA--AAA-ACACAAAATTCTAGTGCGAAAAAAG------CGAG--
droTak1 scf7180000415653:165425-165737 - AAAAA-T-------------------------------TGTGT--GTGT---------GTGTG--T-TTGTTTGTTT------GC--TGGTGCGTGTTAGAATTGTACTAGCAT---TGGTAT------TAGTATTAGTACTATT-GCTAGTAGAAGCGCCTT--T-CTTTTT----G-CCACTAATTGGTACCAAAAA-ATAAAAAA----A----AA--GAGATTTAAAGAGCGTGTTACGTGGCCGTC--------TT---------------TCCA------------------------------------CTTCGACCAA--------------------C----T-GAC--CA------------CTTGAGCTAAGAAGCA--CG----CTTCTTACTTATCAGAAT--------------------------------C-----------------------------TAATTAAA--AATT-----------AAA-------CTTTAATAATTTTAGGCAAAAT------------------CAA---------AAAG--ACAGC---------------------------------------------TGAAA--AAA-ACACAAAATTCTAGTGCAAAAAAA-------AGAA--
droEle1 scf7180000491008:780268-780599 - GAAAA-A-------------------------------AGTGT--GTGACAA------GTGT-----------------------GAGTGTGTGTGTTAGAATTGTACTAGCTT---GGTCTT------TAGTATTGGCGTTATT-GCTAGTAGCAGTGACTT----CT--TT----G-CCACTAATTGGTACCGACAA-AAATAAAA----A-----A--AGGCTCTAGAGAGCGTGTTACGTGGCTTTT--------TT---------------TTCA------------------------------------AACTCA---------CATT-----TCATG-C----T-GAC--CA------------GCTGAGCTGCTGGATA--CG----CTTCT----AGTAACACG-------CACACACAT-------------------------------AGTTTCGAACTGCACTACTA---AATGTTAAATTAA--------------A-TTT--ATTTTTCGATTGAAC------------------CAAATAGCCC-CAAAG--ACTGCA------------------------------------------------A-AGAA-TCCCAAAATTGTAGTGCAAAAAAA-----CGAAAG--
droRho1 scf7180000768020:41883-42207 - AA--------------------------------------------------------GTGT-----------------------GAGTGTGTGTGTTAGAATTGTACTAGCTT---TGGCCT------TAGTATTGGTATTATT-GCTAGTAGCAGCGCCTT--T-CTT--T----G-CCACTAATTGGTACCAAAAA-ATATAAAA----A--A--AGGTGGCATTAAAGAGCGTGTTACGTGGCTTTC--------TT---------------TCCA------------------------------------ATTGGAT-AAACTCACATT-----TTATG-C----T-GAC--CA------------GCTGAGCTGTTGTAAA--CT----CTTCT----AGTCACACG-------CACACACGCAC-----------------------------AGTTTCGAGTT-GAATACTA---AAT-TTAAATTAA--------------A-TTTATTT--TTCTTTAAAAT------------------GAAATAGCCTAAAAAG--ACAGC----------------------------------------------GACA--TAA-ACCCAAAATTGTAGTGAAAAAAAA----------C--
droFic1 scf7180000453213:28386-28700 + AAAC--G---------------------------------TGT--GCGA--------------------------------------GTGTGTGTGTTAGAATTGTACTAGTTC---TGGCTC------TAGTATTCGTATTATT-GCTAGTAGCAGCACCTT--T-CTC--T----G-CCACTAATTGGTAGCAACAA-A--------------AGAA--AATCTTTAAAGAGCGCGTTACGTGGCTTAC--------TT---------------TT--------------------------------------------------------------TTGTG-C----T-GAC--CA------------GCTCAGCTGCTGAAAA--CG----CTTCT----AATCACACG-------CACCCAG----------------------CCA--CACGACAGCTTTAAATTTAGTTTCCA---AATTTTACATTCC--------------C-CCCTTTTTTCCTGTCAAAAG------------------AAGCTATC-TATAAAGTCTTTGCA------------------------------------------------A--AAA-GCCCAAAATTGTTGTGCAAAA-AAG---CGAGGAA--
droKik1 scf7180000302706:2303540-2303883 + AAAAC-G---------------------------------TGC--GC---TA------GTGTA--C-G------------T--GTGTGTGTGTGAGAGAGAATCGTACTAGTGC---TA-------------------------------GAAGCAGCACTTT--T-CTTTAACGCTG-CCACTAATTGGTACCAAAAACATAAAAAATATAAAAAGAAAGGAGAAT---AAACGGTGTTACGTGGCCGCC--------GT---------------TCGT------------------------------------TTCGATC-CA-----CTTC-----TCCTG-C----T-GAC--CA------------GCTGAGCTGAAGAAAA--CG----CTTCT----AATCACACA-------CTCACACACACGC----------------------------GCTTCGATTT-GATTCCTA---TTT-T-----------TCCA-------ATTTTGTTTCTCTTGGCAATAA------------------CA----------------AAAAA----GGTCGACGTAGTCAACACGAGA-------------------TAAAG--AAC-ACACAAAATTGCAGTGCAAAACATAAAATTTAAGG--
droAna3 scaffold_12911:2917775-2918097 - AAAGT-G---------------------------------CCC--AC---CA------TTGTG--T-------------------GTGCGTGTGTGAGCGAAGTGCGCTAGTGC---CC-TAC------CCGTATTATGAGAATT-TTTCGTAC-ACCACTTT--T-CC--------C-TTACTAATTGTCG-----AAAGTCGGAAA---------------------AAAATTGTGTTACGTGGCCGCCGCAGCAGCGTTTGCATAAAATTTT-TTCA-------------A-----CGCCAGG---------------CC--------CAGG-----CCAGT-C----C-AGT--CA------------GCTAAGCTTCTCAAAAAACG----CTTCT----AATCGCACT-------CACACACACACGCGC---------C-CTGCCAGAAGCGACAGTTTCGA----------------------------------TTTATTCCG-TTCTCTG-TGCTGGGAAAAC------------------AAAACATC------------------------------------------------------------CAAAG-CGAGA--ACCCAATTGTTG-----------------GGCG--
droBip1 scf7180000396714:188913-189222 + AGAAT-C---------------------------------CCC--AC---CA------TTGTG--T---------------------GTGCGTGTGCGAGAACTACGATAGTGC---CCTACCCGTAACCCGTATTATGAGAAAT-TTTCGTAC-AGCTCTTT--C-CT--------C-TTACTAATTGGCAAAA-----CCCGAAA------C-CGAA--AA--------ACTTCTGTTACGTGGCCGCAGC-GAG-----TGCATAAAATTTT-TTCA--------------------------------------------------------------ACG-C----T-AGC--CA------------GCTAAGCTTCTCAAAAGACG----CTTCT----AATCGCCTC--ACT------CACACTCGCGC---------CCCAGCCAGAAGCGACAGTTTCGA----------------------------------TATATTCGG-TTTTTGT--GTTTGGAAAAC------------------AAAACATC------------------------------------------------------------CAAAA-GGAAA--ACAAAATCGTGGGGCGA------------------
dp5 2:15301072-15301376 + AAAGC-C---------------------------------CGC--AT---AAGTGTGTC--CATTTC---TCTCTCT--GT--GTGTGTGTGTGCG-TAGAATTTTACTAGC----------------------------------------AGCAGCGTTTT--T-CTTTGCCTGTG-CTACTAATTGGTGGG-------------------------------TTTT-----AATGTTACGTGGCCATAAC-GCGGCATT----------------AATCTGGATTAATTAA-----CAATCGG---------------CC------------------TGCA-C----T-GACAACA------------GCTGAGCTGGAGAAAA--CGTAGGCA------------T-C-TCTCTCGCACACACTTTT--AGTT--------------------TTTCG----------------------------------------------------TTTGTTTTTTGGCAATGC------------------TG----------------CTTGTAAGCAATCG---------ATAGAAGAAGAATCTAAATTCAAAACAAAACA------------------------GAACAAA---TTCAAAGTG
droPer2 scaffold_0:5114970-5115282 - AAAGC-C---------------------------------CGC--AT---AAGTGTGTC--CATTTC---TCTGTGTGTGT--GTGTGTGTGTGCG-TAGAATTTTACTAGCAG---CA-------------------------------GCAGCAGCGTTTT--T-CTTTGCCATTG-CTACTAATTGGTGGG-------------------------------TTTT-----AATGTTACGTGGCCATAAC-GCGGCATT----------------AATCTGGATTAATTAA-----CAATCGG---------------CC------------------TGCA-C----T-GACAACA------------GCTGAGCTGGAGAAAA--CGTAGGCA------------T-C-TCTCTCGCACACACTTTT--AGTT--------------------TTTCG----------------------------------------------------TTTGTTTTTTGGCAATGC------------------TG----------------CTTGTAAGCAATCG---------ATAGAAGAAGAATCTAAATTCAAAACAAAACA------------------------GAACAAA---TTCAAAGTG
droWil2 scf2_1100000004921:2785112-2785363 - T----------------------------------------GTGTGCTT---------GTGTG--A-------------------ATGTTTGCGTGTAAGAATAATTT--GTTGTTTCTTTAC------TATCGCTTGTG-------------------------------CT----G-CTGCTAATTGGTGAC--------------------------------TTTTTGGAAATGTTACGTGGCGGCAAA-AATA-TT-----------------T-----AATTAATTAA-----CGATTTC----CCCCCACTTCCACACA-CTCACACAAAACTCCACA-ACAATC-AGCAACA------------GCTGAGACC-AGAAA-----------------------------------------------------------------------------------------------------ATAAAACAA--------------A-TTCACAT----TG--------------------------------------------------------G---------AAAGTAAAAAAAACAAA----------AATAA-C-------------------AACAAGCAAA---TTAAAGA--
droVir3 scaffold_13047:13024477-13024817 + AAG-C-T---------------------------------CGC--AT---TAGTGTGAG--TGTTGTT--TCTTGT----T--GAGTGTATGCGAATAAGAACAATAATACTGG---CCG-------------------------------CCGTTGTGCTAT----TTTAGCAGTCG-CTACTAATTGGTTCA--------------------------------------ATGCTGTTACGTGGCCGCAGC-GTTG-CT---------------TTTAATTAACCAACTTAC-----CACGGAGTTGGCAC---------------------T-----TCAA-TC----CGAAT--CAAATATACATACATATGAGCATAAATACA--CACACACA--------------C-ACACACACACACACATGT--AGATAAGTGTAA-CAGCAG--GACTTCAGTTTTAA-----------------------------------------------------ATTGGTCATAA--CAC-------------AAAAC----------------------AGTTGAACA-----AAAAAAAAATATAATAAAATAAAAAAAA-AAAAA------ACAATATCCA------------------AGTAA--
droMoj3 scaffold_6540:28829509-28829546 - AAAAT-A-------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAAAAAAAACAA-A---------------------AACAGAAA---TTCGGAA--
droGri2 scaffold_15074:4054284-4054558 + AAGCACTCGCATTAAAAATATATACATATATATAGATATATGT--GTGA---------GTGCG--T-G------------T--GTGTGTGTATGAATAAGAATAATAA--GTGG---------------------------------------------TTATTCT-TGCAGAAGTCGTTTGCTAATTGGACCT-------------------------------TT-----TGAGTCTTACGTGGCTTTA--------AT---------------TAAT-TT--ATTAATTTACTAACTAAGGAGCTGGCTCTCTC----------------------------TT----CGAAT--CAA---------------------------------------T----AATA-------------ACACACAAAA--A--------------------AACTTCAGTTTCAA----------------------------------------------------AATTGGCAAAATAACAAAATACACACAAATAG----------------ATTGT-------------------------------------------------------------------ATGTGCGAAA--AA---TAAAAAA--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AAAAC-G-------------------------------AGTGT--GCGA---------TTGTG--T-----------------GTGTGTGTGCGTGTTAGAATTGTATTAGCGT---TGGTAT------CAGTATAAGTACAATT-CTAAGCAGAATCGCGTTTTT-TGTTGGTTTTGTTTTTTAATTGGAACCAAGAATATCGAAAAAAAAAA-C--AAGCAGATTCCAAGAGCGTGTTACGTGGCCGTC--------TT---------------TCCA------------------------------------ATTGGAC-AA--------------------C----T-GAC--CA------------GCTGAGCTGCTGAAAA--CA----GTTCT----AAACGGAGA--------------------------------C-----------------------TT-GACTACTGAAA--CATTGAAATACATTGATA-------ATTTAATAATTCCAGGCAAAAT------------------CA----------------ACTGTA------------------------------------------------A--GAAA--CCAAAATTCTAGTGCAAAACAAA---TTAAGAA--SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................TGCTGAAAA--CA----GTTCT----AAACGGAGA--------------------------------C-----------------------T....................................................................................................................................................................................................2712.00200000010100000000
...............................................................................................................................................................................................................................................................................................................................................................T-GAC--CA------------GCTGAGCTGCTGAAAA--CA----GT.............................................................................................................................................................................................................................................................................2611.00100000000001000000
..........................................................................................................ATTAGCGT---TGGTAT------CAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................CA----GTTCT----AAACGGAGA--------------------------------C-----------------------TT-GAC...............................................................................................................................................................................................2211.00100001000000000000
....................................................................................................................................................................................................................................................................................TCCA------------------------------------ATTGGAC-AA--------------------C----T-GAC--CA------------GCTGAG.................................................................................................................................................................................................................................................................................................2611.00100000000000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AAACGGAGA--------------------------------C-----------------------TT-GACTACTGAAA--CA...................................................................................................................................................................................2511.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGAAA--CATTGAAATACAT........................................................................................................................................................................2111.00100001000000000000
..........................................................................................................ATTAGCGT---TGGTAT------CAGTATAAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGCAAAAT------------------CA----------------ACTGTA------------------------------------------------A--GAAA--C..................................2511.00100000001000000000
...............................................GA---------TTGTG--T-----------------GTGTGTGTGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1931.00300003000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------ACTGTA------------------------------------------------A--GAAA--CCAAAATTCTAGTGC....................2711.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------CA----------------ACTGTA------------------------------------------------A--GAAA--CCAAAATTCTAGTG.....................2811.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------CA----------------ACTGTA------------------------------------------------A--GAAA--CCAAAATTCTAGTGC....................2911.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT------------------CA----------------ACTGTA------------------------------------------------A--GAAA--CC.................................1811.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAAAT------------------CA----------------ACTGTA------------------------------------------------A--GAA......................................2011.00100000001000000000
...........................................................TGTG--T-----------------GTGTGTGTGCGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.25500000000005000000
..........................................T--GCGA---------TTGTG--T-----------------GTGTGTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.17100000000001000000
droSec2
AAAAC-G-------------------------------AGTGT--GCGA---------TTGTG--T-T------------T--GTGTGCGTGCGTGTTAGAATTGTATTAGCGT---TGGTAA------CAGTATAAGTACAAGT-CTAAGCAGAATCGCGTTTTT-TGTTGGTTTTGTTTTTTAATTGGAACCAAGAATATCGAAAA----AA-C--AAGCAGATTCCAAGAGCGTGTTACGTGGCCGTC--------TT---------------TCCA------------------------------------ATTGGAC-AA--------------------C----T-GAC--CA------------GCTGAGCTGCTGAAAA--CA----GTTCT----AAACGGAGA--------------------------------C-----------------------TT-GACTACTGAAA--CATTGAAATACATTGATA-------ATTTAATAATTCCAGGCAAAAT------------------CA----------------ACTGTA------------------------------------------------A--GAAA--CCAAAATTCTAGTGCAAAACAAA---TTAAGAA--SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................AC-AA--------------------C----T-GAC--CA------------GCTGAGCTGCT............................................................................................................................................................................................................................................................................................2211.0010100
.......................................................................................................................................................................................................................................................................................................................................................................A------------GCTGAGCTGCTGAAAA--CA----GT.............................................................................................................................................................................................................................................................................2111.0010100
...............................................................................................................................................................................................................................................................................................................................GGAC-AA--------------------C----T-GAC--CA------------GCTGAGCTGC.............................................................................................................................................................................................................................................................................................2311.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................GTTCT----AAACGGAGA--------------------------------C-----------------------TT-GACT..............................................................................................................................................................................................2111.0010010
.................................................................................................................................................................................................................................TTCCAAGAGCGTGTTACGTGGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
...........................................................................................................................................................................................................GAAAA----AA-C--AAGCAGATTCCAAGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
dm3
AAAAC-A-------------------------------AGTGT--GCGA---------GTGTG--T-----------------GTGTGTGTGCGTGTTAGAATTATATTAGAGT---TGGTAT------CAGTATAAGTACAATT-CTAAGCAGAATCGCGCT--TTTT--TT----G-TCACTAATTGGAACCAAGAATATCGAAAA----AA-C--GAGCAGATTCCAAGAGCGTGTTACGTGGCCGTC--------TT---------------TCCA------------------------------------ATTGGAC-AA--------------------C----T-GAC--CA------------GCTGAGCTGCTGAAAA--CA----GTTCT----AATCGGAGA--------------------------------C-----------------------TT-GACTATTGAAA--CATTAAAATACAATCATA-------ATTTAATAATTCCAGGCAAAAT------------------CA----------------ACTGTA------------------------------------------------A--GAAA--CCAAAATTCTAGTGCGAAACAAA---TTAAGAA--SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..AAC-A-------------------------------AGTGT--GCGA---------GTGTG--..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1818.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000010000000001000000000000000000000000000000000000000010000000000000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--GAAA--CCAAAATTCTAGTGCG...................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................AAA--CA----GTTCT----AATCGGAGA--------------------------------C-----------------------T....................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................AGCAGATTCCAAGAGCGTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT------------------CA----------------ACTGTA------------------------------------------------A--GAAA--CCAAAATT...........................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAA--CCAAAATTCTAGTGCGAA.................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................AAGAGCGTGTTACGTGGCCGTC--------TT---------------TCC....................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................GAGCGTGTTACGTGGCCGTC--------........................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
..AAC-A-------------------------------AGTGT--GCGA---------GTGTG--T-----------------GTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000
...........................................................................................................................................................................................................................................................................................................................................................................................TGCTGAAAA--CA----GTTCT----AATCGG................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................TACGTGGCCGTC--------TT---------------TCCA------------------------------------ATTGG..........................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000
...............................................................................................................................................................................................................................................................................................................................GGAC-AA--------------------C----T-GAC--CA------------GCTGAGCTGC.............................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000001000
..AAC-A-------------------------------AGTGT--GCGA---------GTGTG--T-----------------G.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................................................................TT----G-TCACTAATTGGAACCAAGAATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCTAGTGCGAAACA..............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................ATCGCGCT--TTTT--TT----G-TCACTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................AA-C--GAGCAGATTCCAAGAGCGTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.AAAC-A-------------------------------AGTGT--GCGA---------GTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................AA--------------------C----T-GAC--CA------------GCTGAGCTGCTG...........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GT--GCGA---------GTGTG--T-----------------GTGTGTGTGCGTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
........................................................................................................................................................................................................ATCGAAAA----AA-C--GAGCAGATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TTCCAAGAGCGTGTTACGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................ATAAGTACAATT-CTAAGCAGAATCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................TGTTACGTGGCCGTC--------TT---------------TCC....................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................C-AA--------------------C----T-GAC--CA------------GCTGAGCTGCT............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................A----GTTCT----AATCGGAGA--------------------------------C-----------------------TT-..................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................GTACAATT-CTAAGCAGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................AC-AA--------------------C----T-GAC--CA------------GCTGAGCTGCTGA..........................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......A-------------------------------AGTGT--GCGA---------GTGTG--T-----------------GTGTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCAAAAT------------------CA----------------ACTGTA------------------------------------------------A--GAAA--CCAAAAT............................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................GTGTGCGTGTTAGAATTATATTAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................................TCCAAGAGCGTGTTACGTGGCCGTC--------........................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................AAAA--CA----GTTCT----AATCGGAGA--------------------------------C-----------------------T....................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--CCAAAATTCTAGTGCGAAACAAA---.........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TTCCAAGAGCGTGTTACGTGGCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAATTCCAGGCAAAAT------------------CA----------------..................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................................................................................GTGTGTGCGTGTTAGAATTATATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................TGGAACCAAGAATATCGAAAA----AA-C--GAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................AA----AA-C--GAGCAGATTCCAAGAGCGTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................A--------------------C----T-GAC--CA------------GCTGAGCTGCTGAAAA--C....................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................AC-AA--------------------C----T-GAC--CA------------GCTGAGCTGCTGAAA........................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................CA------------------------------------ATTGGAC-AA--------------------C----T-GAC--CA------------GCTGAGCTGCT............................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................GCAGATTCCAAGAGCGTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................ATCGCGCT--TTTT--TT----G-TCACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------CA----------------ACTGTA------------------------------------------------A--GAAA--CCAAAATTC..........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................AAGCAGAATCGCGCT--TTTT--TT----G-TC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TGAAAA--CA----GTTCT----AATCGGAGA--------------------------------C-----------------------T....................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................................TGTGCGTGTTAGAATTATATTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................GCTGAAAA--CA----GTTCT----AATCGGAGA--------------------------------C-----------------------TT-..................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................CAGTATAAGTACAATT-CTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...............................................GA---------GTGTG--T-----------------GTGTGTGTGCGTGTTAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................................................................................GTGTTAGAATTATATTAGAGT---......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................AAGAATATCGAAAA----AA-C--GAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAT------------------CA----------------ACTGTA------------------------------------------------A--GAAA--CC.................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................A--------------------C----T-GAC--CA------------GCTGAGCTGCTGA..........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAT------------------CA----------------ACTGTA------------------------------------------------A--GAAA--C..................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................GCGTGTTACGTGGCCGTC--------TT---------------TC.....................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................G--T-----------------GTGTGTGTGCGTGTTAGAATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------ACTGTA------------------------------------------------A--GAAA--CCAAAATTCTAGT......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................GTGTGTGTGCGTGTTAGAATTATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATAATTCCAGGCAAAAT------------------CA----------------ACTG..............................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................AAA--CA----GTTCT----AATCGGAGA--------------------------------.............................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.............................................................................................................................................................................................................................................................................................................................TTGGAC-AA--------------------C----T-GAC--CA------------GCTGAGCTGCT............................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AAC-A-------------------------------AGTGT--GCGA---------GTGTG--T-----------------GTGTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
......................................................................................................................................................................................................................................................................................CA------------------------------------ATTGGAC-AA--------------------C----T-GAC--CA------------GCTGAGCT...............................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TAGAGT---TGGTAT------CAGTATAAGTACAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................CAAGAGCGTGTTACGTGGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................CTGAGCTGCTGAAAA--CA----GTT............................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................TTAGAGT---TGGTAT------CAGTATAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................CA----GTTCT----AATCGGAGA--------------------------------C-----------------------TT-GACTATTGA.........................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................AATT-CTAAGCAGAATCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................GCGA---------GTGTG--T-----------------GTGTGTGTGCGTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................................................................................................................................................................................................................................................................................................................TTGGAC-AA--------------------C----T-GAC--CA------------GCTGAGCTGCTGA..........................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................T--TTTT--TT----G-TCACTAATTGGAACCAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................AGT---TGGTAT------CAGTATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................A------------------------------------ATTGGAC-AA--------------------C----T-GAC--CA------------GCTGAGC................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................A--------------------C----T-GAC--CA------------GCTGAGCTGCTGAAAA--.....................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................AGTGT--GCGA---------GTGTG--T-----------------GTGTGTGTGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................ACGTGGCCGTC--------TT---------------TCCA------------------------------------ATTGGAC-.......................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................AC--CA------------GCTGAGCTGCTGAAAA--CA----GT.............................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................ACTAATTGGAACCAAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................AGCAGATTCCAAGAGCGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
....................................................................................TGTGTGTGCGTGTTAGAATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................A----GTTCT----AATCGGAGA--------------------------------C-----------------------TT-GACT..............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................T-----------------GTGTGTGTGCGTGTTAGAATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................A------------------------------------ATTGGAC-AA--------------------C----T-GAC--CA------------GCTGA..................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TTCCAAGAGCGTGTTACGTGGCCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TGTGTGCGTGTTAGAATTATATTAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.............................................................................................GTGTTAGAATTATATTAGAGT---TGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AAAC-A-------------------------------AGTGT--GCGA---------GTGTG--T-----------------GTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................AA--------------------C----T-GAC--CA------------GCTGAGCTGCT............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTA------------------------------------------------A--GAAA--CCAAAATTCTAGTGC....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................A-C--GAGCAGATTCCAAGAGCGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...................................................................................................................................................................................................AGAATATCGAAAA----AA-C--GAGCAGATTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................GTGT--GCGA---------GTGTG--T-----------------GTGTGTGTGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
......A-------------------------------AGTGT--GCGA---------GTGTG--T-----------------GTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AC-A-------------------------------AGTGT--GCGA---------GTGTG--T-----------------G.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................TG--T-----------------GTGTGTGTGCGTGTTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................G--T-----------------GTGTGTGTGCGTGTTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GT--GCGA---------GTGTG--T-----------------GTGTGTGTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2260.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
......A-------------------------------AGTGT--GCGA---------GTGTG--T-----------------G.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1760.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TGT--GCGA---------GTGTG--T-----------------GTGTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
........................................TGT--GCGA---------GTGTG--T-----------------GTGTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
......................................AGTGT--GCGA---------GTGTG--T-----------------GTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000
..........................................T--GCGA---------GTGTG--T-----------------GTGTGTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000010000000000000000000000000000000
droEre2
AAAAC-G-------------------------------AGTGT--GCGA---------GTGTG--T-------------------GTGTGTGCGTGTTAGAATTTTACTAGCGT---TGGTAT------CAGTATAAGTACAATT-CTAAGTAGAATCGTCTT--T-CTT-TT----G-TCACTAATTGGAACCGAAAA-ATCGAAAA-----A-C--AAGCGGATTCAAAGAGCGTGTTACGTGGCTGTC--------TT---------------TCCA------------------------------------ATTGGAC-AA--------------------C----T-GGT--CA------------GCTGAGCTGCTTAAAA--CA----GTTCT----AATCGGAGT--------------------------------T-----------------------TT-GACATCTGAAA--CATTGAAATGCAATGATA-------ATTAAATATTTCCAGGCAAAAT------------------CA----------------ACAGTG------------------------------------------------A-GGAAA--CCCAAATTCTAGCGCAAAACAAA---TTAAAAA--SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................AA--CA----GTTCT----AATCGGAGT--------------------------------T-----------------------.....................................................................................................................................................................................................1911.0010000100
..................................................................................................AGAATTTTACTAGCGT---TGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
................................................................................................................................................................................................................................................................................................................................................................................................AAAA--CA----GTTCT----AATCGGAGT--------------------------------.............................................................................................................................................................................................................................2011.0010000010
....................................................................................................................................................................................................................................AAAGAGCGTGTTACGTGGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
...........................................................................................................................................................................................................GAAAA-----A-C--AAGCGGATTCAAAGAGCGTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAT------------------CA----------------ACAGTG------------------------------------------------A-GGAAA--CCCAA..............................2411.0010000010
.........................................GT--GCGA---------GTGTG--T-------------------GTGTGTGCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.2510000010
......................................AGTGT--GCGA---------GTGTG--T-------------------GTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18170.0610000010
droYak3
AAAAC-G-------------------------------TGTGT--GCGA---------GTGTG--T-------------------GTGTGTGCATGCTAGAATTGTACTAGCCT---TGGTAT------CAGTATAAGTACAATT-CTAAGTAGAATCGCCTT--T-CTT-TT----G-TCACTAATTGGAAACAAAAA-ATTCAGAA----AG-C--AAGCAGATTCGAAGAGCGTGTTACGTGGCCGTC--------TT---------------TCCG------------------------------------ATTGGAC-AA--------------------C----T-GAA--CA------------A-----CTGCTTAAAA--CA----GTTCT----AATCGGAGA--------------------------------C-----------------------TT-GACTTCTGAAA--CATTGAATTGCAATTATA-------ATTTAATATTTTCAGGCCAAAT------------------CA----------------ACAGTA------------------------------------------------A--GAAT--TCCAAATTATAGTGCAAAACAAA---TTGAAAA--SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................ATTCGAAGAGCGTGTTACGTGGCCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
.......................................................................................................TGTACTAGCCT---TGGTAT------CAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
...............................................................................................................................................................................................................................................TACGTGGCCGTC--------TT---------------TCCG------------------------------------ATTG...........................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAGA--------------------------------C-----------------------TT-GACTTCTGAAA--CATTGAA..............................................................................................................................................................................2811.00101000000000
.....................................................................................................................................................................................................AA-ATTCAGAA----AG-C--AAGCAGATTCGAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................GA--------------------------------C-----------------------TT-GACTTCTGAAA--CATT.................................................................................................................................................................................2011.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................GTTCT----AATCGGAGA--------------------------------C-----------------------TT-GACTTCTG..........................................................................................................................................................................................2511.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................GA--------------------------------C-----------------------TT-GACTTCTGAAA--CATTGAA..............................................................................................................................................................................2311.00101000000000
droEug1
AAAAC-G---------------------------------TGT--AC---AA------GTGTT-----------------------TGTGTGCGTGTTAGAATTGTACTAGCAT---TTGCCT------TAGTATTAGTACTACTGGCTAGTAGAAGCCTTTT--T-CTTTTT--CCC-CAACTAATTGGTACCAAAAAAATAAAACAA---AA-AGAA--AAGATTCAAAGAGCGTGTTACGTGGCCGTA--------TT---------------TCCA------------------------------------ATTGGAC-CAACTCATATT-----TTGAG-C----T-GAC--CA------------GCTGAGCTACTGGAAAG-AG----CTTCT----AATCAGAAT--------------------------------G----------------TTCTCATTTTAATTAATC---AAT------------TCAAT-------ATTTTATATTTTTAGGCAAAAC------------------CA----------------AAAAAA-----------------------AAA-------------------------G-AA--ACAAAATTCTAGTGAAAAAACAA---ACACGAG--SizeHit CountTotal NormTotal
No Reads
droBia1
AAACC-G-------------------------------TGTGT--GTGC---------GCGTG--TG---TGTGTAT--GTGTGCCCCTGTGCGTGTTAGAATCGTACTAGCTG---CGGCAT------TAGTGTTGGTAGCGCT-GCTAGTGGAAGCGCCTT--T-CTTTTT----G-CCACTAATTGGTACCAAAAA-ACACAGAG----A--AGAA--GAGATTTAAAGAGCGTGTTACGTGGCCGTC--------TTT-----------TATTCCA------------------------------------G-------------------------------------CT--CA------------GCTGAGCCACCAAGCA--CG----CTTCC----AATCAGAAT--------------------------------C-----------------------T--AATTA-----------------ACAGTTTTA-------CTCGGATATTTCCAGGCTAA---------------------------------------CAGC----------------------------------------------GAAA--AAA-ACACAAAATTCTAGTGCGAAAAAAG------CGAG--SizeHit CountTotal NormTotal
No Reads
droTak1
AAAAA-T-------------------------------TGTGT--GTGT---------GTGTG--T-TTGTTTGTTT------GC--TGGTGCGTGTTAGAATTGTACTAGCAT---TGGTAT------TAGTATTAGTACTATT-GCTAGTAGAAGCGCCTT--T-CTTTTT----G-CCACTAATTGGTACCAAAAA-ATAAAAAA----A----AA--GAGATTTAAAGAGCGTGTTACGTGGCCGTC--------TT---------------TCCA------------------------------------CTTCGACCAA--------------------C----T-GAC--CA------------CTTGAGCTAAGAAGCA--CG----CTTCTTACTTATCAGAAT--------------------------------C-----------------------------TAATTAAA--AATT-----------AAA-------CTTTAATAATTTTAGGCAAAAT------------------CAA---------AAAG--ACAGC---------------------------------------------TGAAA--AAA-ACACAAAATTCTAGTGCAAAAAAA-------AGAA--SizeHit CountTotal NormTotal
No Reads
droEle1
GAAAA-A-------------------------------AGTGT--GTGACAA------GTGT-----------------------GAGTGTGTGTGTTAGAATTGTACTAGCTT---GGTCTT------TAGTATTGGCGTTATT-GCTAGTAGCAGTGACTT----CT--TT----G-CCACTAATTGGTACCGACAA-AAATAAAA----A-----A--AGGCTCTAGAGAGCGTGTTACGTGGCTTTT--------TT---------------TTCA------------------------------------AACTCA---------CATT-----TCATG-C----T-GAC--CA------------GCTGAGCTGCTGGATA--CG----CTTCT----AGTAACACG-------CACACACAT-------------------------------AGTTTCGAACTGCACTACTA---AATGTTAAATTAA--------------A-TTT--ATTTTTCGATTGAAC------------------CAAATAGCCC-CAAAG--ACTGCA------------------------------------------------A-AGAA-TCCCAAAATTGTAGTGCAAAAAAA-----CGAAAG--SizeHit CountTotal NormTotal
No Reads
droRho1
AA--------------------------------------------------------GTGT-----------------------GAGTGTGTGTGTTAGAATTGTACTAGCTT---TGGCCT------TAGTATTGGTATTATT-GCTAGTAGCAGCGCCTT--T-CTT--T----G-CCACTAATTGGTACCAAAAA-ATATAAAA----A--A--AGGTGGCATTAAAGAGCGTGTTACGTGGCTTTC--------TT---------------TCCA------------------------------------ATTGGAT-AAACTCACATT-----TTATG-C----T-GAC--CA------------GCTGAGCTGTTGTAAA--CT----CTTCT----AGTCACACG-------CACACACGCAC-----------------------------AGTTTCGAGTT-GAATACTA---AAT-TTAAATTAA--------------A-TTTATTT--TTCTTTAAAAT------------------GAAATAGCCTAAAAAG--ACAGC----------------------------------------------GACA--TAA-ACCCAAAATTGTAGTGAAAAAAAA----------C--SizeHit CountTotal NormTotal
No Reads
droFic1
AAAC--G---------------------------------TGT--GCGA--------------------------------------GTGTGTGTGTTAGAATTGTACTAGTTC---TGGCTC------TAGTATTCGTATTATT-GCTAGTAGCAGCACCTT--T-CTC--T----G-CCACTAATTGGTAGCAACAA-A--------------AGAA--AATCTTTAAAGAGCGCGTTACGTGGCTTAC--------TT---------------TT--------------------------------------------------------------TTGTG-C----T-GAC--CA------------GCTCAGCTGCTGAAAA--CG----CTTCT----AATCACACG-------CACCCAG----------------------CCA--CACGACAGCTTTAAATTTAGTTTCCA---AATTTTACATTCC--------------C-CCCTTTTTTCCTGTCAAAAG------------------AAGCTATC-TATAAAGTCTTTGCA------------------------------------------------A--AAA-GCCCAAAATTGTTGTGCAAAA-AAG---CGAGGAA--SizeHit CountTotal NormTotal
No Reads
droKik1
AAAAC-G---------------------------------TGC--GC---TA------GTGTA--C-G------------T--GTGTGTGTGTGAGAGAGAATCGTACTAGTGC---TA-------------------------------GAAGCAGCACTTT--T-CTTTAACGCTG-CCACTAATTGGTACCAAAAACATAAAAAATATAAAAAGAAAGGAGAAT---AAACGGTGTTACGTGGCCGCC--------GT---------------TCGT------------------------------------TTCGATC-CA-----CTTC-----TCCTG-C----T-GAC--CA------------GCTGAGCTGAAGAAAA--CG----CTTCT----AATCACACA-------CTCACACACACGC----------------------------GCTTCGATTT-GATTCCTA---TTT-T-----------TCCA-------ATTTTGTTTCTCTTGGCAATAA------------------CA----------------AAAAA----GGTCGACGTAGTCAACACGAGA-------------------TAAAG--AAC-ACACAAAATTGCAGTGCAAAACATAAAATTTAAGG--SizeHit CountTotal NormTotal
No Reads
droAna3
AAAGT-G---------------------------------CCC--AC---CA------TTGTG--T-------------------GTGCGTGTGTGAGCGAAGTGCGCTAGTGC---CC-TAC------CCGTATTATGAGAATT-TTTCGTAC-ACCACTTT--T-CC--------C-TTACTAATTGTCG-----AAAGTCGGAAA---------------------AAAATTGTGTTACGTGGCCGCCGCAGCAGCGTTTGCATAAAATTTT-TTCA-------------A-----CGCCAGG---------------CC--------CAGG-----CCAGT-C----C-AGT--CA------------GCTAAGCTTCTCAAAAAACG----CTTCT----AATCGCACT-------CACACACACACGCGC---------C-CTGCCAGAAGCGACAGTTTCGA----------------------------------TTTATTCCG-TTCTCTG-TGCTGGGAAAAC------------------AAAACATC------------------------------------------------------------CAAAG-CGAGA--ACCCAATTGTTG-----------------GGCG--SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................GCACT-------CACACACACACGCGC---------C-CT..........................................................................................................................................................................................................................2311.001100000
.....................................................................................................................................................................................ACTAATTGTCG-----AAAGTCGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
........................................................................................................................................................................................................................................................GCCGCAGCAGCGTTTGCATA...............................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
................................................................................................AGCGAAGTGCGCTAGTGC---CC-TAC------CCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
..............................................................................................................................................................................................................................................................................................................................................G-----CCAGT-C----C-AGT--CA------------GCTAAGCT...............................................................................................................................................................................................................................................................................................2111.001010000
droBip1
AGAAT-C---------------------------------CCC--AC---CA------TTGTG--T---------------------GTGCGTGTGCGAGAACTACGATAGTGC---CCTACCCGTAACCCGTATTATGAGAAAT-TTTCGTAC-AGCTCTTT--C-CT--------C-TTACTAATTGGCAAAA-----CCCGAAA------C-CGAA--AA--------ACTTCTGTTACGTGGCCGCAGC-GAG-----TGCATAAAATTTT-TTCA--------------------------------------------------------------ACG-C----T-AGC--CA------------GCTAAGCTTCTCAAAAGACG----CTTCT----AATCGCCTC--ACT------CACACTCGCGC---------CCCAGCCAGAAGCGACAGTTTCGA----------------------------------TATATTCGG-TTTTTGT--GTTTGGAAAAC------------------AAAACATC------------------------------------------------------------CAAAA-GGAAA--ACAAAATCGTGGGGCGA------------------SizeHit CountTotal NormTotal
No Reads
dp5
AAAGC-C---------------------------------CGC--AT---AAGTGTGTC--CATTTC---TCTCTCT--GT--GTGTGTGTGTGCG-TAGAATTTTACTAGC----------------------------------------AGCAGCGTTTT--T-CTTTGCCTGTG-CTACTAATTGGTGGG-------------------------------TTTT-----AATGTTACGTGGCCATAAC-GCGGCATT----------------AATCTGGATTAATTAA-----CAATCGG---------------CC------------------TGCA-C----T-GACAACA------------GCTGAGCTGGAGAAAA--CGTAGGCA------------T-C-TCTCTCGCACACACTTTT--AGTT--------------------TTTCG----------------------------------------------------TTTGTTTTTTGGCAATGC------------------TG----------------CTTGTAAGCAATCG---------ATAGAAGAAGAATCTAAATTCAAAACAAAACA------------------------GAACAAA---TTCAAAGTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................CATTTC---TCTCTCT--GT--GTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020200000000
..............................................................................................CG-TAGAATTTTACTAGC----------------------------------------AG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG---------ATAGAAGAAGAATCTAA..........................................................2011.0010100000000
....................................................................................................................................................................................................................................................................................................AA-----CAATCGG---------------CC------------------TGCA-C----T-GACA......................................................................................................................................................................................................................................................................................................................2111.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................AAA--CGTAGGCA------------T-C-TCTCTCGCACA..................................................................................................................................................................................................................................................2411.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................TGCA-C----T-GACAACA------------GCTGAGCTGGA............................................................................................................................................................................................................................................................................................2411.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTT--AGTT--------------------TTTCG----------------------------------------------------TTTGTTTTTTGGC...........................................................................................................................................2811.0010100000000
.........................................................................................................................................................................................................................................................................................CTGGATTAATTAA-----CAATCGG---------------C.........................................................................................................................................................................................................................................................................................................................................................2111.0010000000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------TTTCG----------------------------------------------------TTTGTTTTTTGGC...........................................................................................................................................1911.0011000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAATGC------------------TG----------------CTTGTAAGC.........................................................................................2011.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCAATGC------------------TG----------------CTTGTAAG..........................................................................................2111.0010000001000
.......................................................................CTCTCT--GT--GTGTGTGTGTGCG-..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21100.1010000001000
.................................................................TC---TCTCTCT--GT--GTGTGTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
droPer2
AAAGC-C---------------------------------CGC--AT---AAGTGTGTC--CATTTC---TCTGTGTGTGT--GTGTGTGTGTGCG-TAGAATTTTACTAGCAG---CA-------------------------------GCAGCAGCGTTTT--T-CTTTGCCATTG-CTACTAATTGGTGGG-------------------------------TTTT-----AATGTTACGTGGCCATAAC-GCGGCATT----------------AATCTGGATTAATTAA-----CAATCGG---------------CC------------------TGCA-C----T-GACAACA------------GCTGAGCTGGAGAAAA--CGTAGGCA------------T-C-TCTCTCGCACACACTTTT--AGTT--------------------TTTCG----------------------------------------------------TTTGTTTTTTGGCAATGC------------------TG----------------CTTGTAAGCAATCG---------ATAGAAGAAGAATCTAAATTCAAAACAAAACA------------------------GAACAAA---TTCAAAGTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................ATCGG---------------CC------------------TGCA-C----T-GACAAC....................................................................................................................................................................................................................................................................................................................1913.003300000
................................................................................................................................................................................................................................................................................................AATTAA-----CAATCGG---------------CC------------------TGCA-C----T-GAC.......................................................................................................................................................................................................................................................................................................................2413.003300000
................................................................................................................................................................................................................................................................................................AATTAA-----CAATCGG---------------CC------------------TGCA-C----T-GACAAC....................................................................................................................................................................................................................................................................................................................2713.003300000
....................................................................................................................................................................................................................................................................................................AA-----CAATCGG---------------CC------------------TGCA-C----T-GAC.......................................................................................................................................................................................................................................................................................................................2013.003300000
...................................................................................................................................................................................................................................................................................................TAA-----CAATCGG---------------CC------------------TGCA-C----T-GAC.......................................................................................................................................................................................................................................................................................................................2112.002200000
................................................................................................................................................................................................................................................................................................AATTAA-----CAATCGG---------------CC------------------TGCA-C----T-GC........................................................................................................................................................................................................................................................................................................................2311.001100000
...............................................................................................G-TAGAATTTTACTAGCAG---CA-------------------------------GCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
............................................................................................................................................................................................................................................................C-GCGGCATT----------------AATCTGGATTAA.........................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
................................................................................................................................................................................................................................................................................................AATTAA-----CAATCGG---------------CC------------------TGCA-C----T-GACA......................................................................................................................................................................................................................................................................................................................2511.001010000
droWil2
T----------------------------------------GTGTGCTT---------GTGTG--A-------------------ATGTTTGCGTGTAAGAATAATTT--GTTGTTTCTTTAC------TATCGCTTGTG-------------------------------CT----G-CTGCTAATTGGTGAC--------------------------------TTTTTGGAAATGTTACGTGGCGGCAAA-AATA-TT-----------------T-----AATTAATTAA-----CGATTTC----CCCCCACTTCCACACA-CTCACACAAAACTCCACA-ACAATC-AGCAACA------------GCTGAGACC-AGAAA-----------------------------------------------------------------------------------------------------ATAAAACAA--------------A-TTCACAT----TG--------------------------------------------------------G---------AAAGTAAAAAAAACAAA----------AATAA-C-------------------AACAAGCAAA---TTAAAGA--SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................TTTGGAAATGTTACGTGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200200
......................................................................................................................................................................................................................................................................................................................................................................................TGAGACC-AGAAA-----------------------------------------------------------------------------------------------------ATAAAACA...........................................................................................................................................................................2011.00100010
................................................................................................................................................................................................................................................................................................................................................AACTCCACA-ACAATC-AGCAACA------------GCT....................................................................................................................................................................................................................................................................................................2511.00101000
.........................................GTGTGCTT---------GTGTG--A-------------------ATGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
...............................................................................................................................................................................................GAC--------------------------------TTTTTGGAAATGTTACGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.....................................................................................................................................GCTTGTG-------------------------------CT----G-CTGCTAATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.......................................................................................................................................................................................TAATTGGTGAC--------------------------------TTTTTGGAAATGTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
...........................................................................................................T--GTTGTTTCTTTAC------TATCGCTTGTG-------------------------------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
..........................................................................................................................C------TATCGCTTGTG-------------------------------CT----G-CTGCTAATTGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
........................................................................................TTTGCGTGTAAGAATAATTT--GTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAA--------------A-TTCACAT----TG--------------------------------------------------------G---------AAAG.......................................................................2211.00110000
.................................................................................................................................TATCGCTTGTG-------------------------------CT----G-CTGCTAATTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
..................................................................................................................................................................................................................................TTTTTGGAAATGTTACGTGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
droVir3
AAG-C-T---------------------------------CGC--AT---TAGTGTGAG--TGTTGTT--TCTTGT----T--GAGTGTATGCGAATAAGAACAATAATACTGG---CCG-------------------------------CCGTTGTGCTAT----TTTAGCAGTCG-CTACTAATTGGTTCA--------------------------------------ATGCTGTTACGTGGCCGCAGC-GTTG-CT---------------TTTAATTAACCAACTTAC-----CACGGAGTTGGCAC---------------------T-----TCAA-TC----CGAAT--CAAATATACATACATATGAGCATAAATACA--CACACACA--------------C-ACACACACACACACATGT--AGATAAGTGTAA-CAGCAG--GACTTCAGTTTTAA-----------------------------------------------------ATTGGTCATAA--CAC-------------AAAAC----------------------AGTTGAACA-----AAAAAAAAATATAATAAAATAAAAAAAA-AAAAA------ACAATATCCA------------------AGTAA--SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................ATACATACATATGAGCATA.............................................................................................................................................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................GTTCA--------------------------------------ATGCTGTTACGTGGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
................................................................................T--GAGTGTATGCGAATAAGAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................GT----T--GAGTGTATGCGAATAAGAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................TTTAATTAACCAACTTAC-----CACGGAGTT.......................................................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................GT----T--GAGTGTATGCGAATAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
.................................................................GTT--TCTTGT----T--GAGTGTATGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................CGTGGCCGCAGC-GTTG-CT---------------TTTAATTAACC............................................................................................................................................................................................................................................................................................................................................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................GT----T--GAGTGTATGCGAATAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AAATACA--CACACACA--------------C-ACACA........................................................................................................................................................................................................................................................21200.60120012000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAAAAA-AAAAA------A..................................16200.051000000000000000000000000000000000000000000000000000000000000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATAAAAAAAA-AAAAA------A..................................19200.051000000000000001000000000000000000000000000000000000000000000000
droMoj3
AAAAT-A-------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAAAAAAAACAA-A---------------------AACAGAAA---TTCGGAA--SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AAGCACTCGCATTAAAAATATATACATATATATAGATATATGT--GTGA---------GTGCG--T-G------------T--GTGTGTGTATGAATAAGAATAATAA--GTGG---------------------------------------------TTATTCT-TGCAGAAGTCGTTTGCTAATTGGACCT-------------------------------TT-----TGAGTCTTACGTGGCTTTA--------AT---------------TAAT-TT--ATTAATTTACTAACTAAGGAGCTGGCTCTCTC----------------------------TT----CGAAT--CAA---------------------------------------T----AATA-------------ACACACAAAA--A--------------------AACTTCAGTTTCAA----------------------------------------------------AATTGGCAAAATAACAAAATACACACAAATAG----------------ATTGT-------------------------------------------------------------------ATGTGCGAAA--AA---TAAAAAA--SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 11:53 AM