ID:

dsi_20312

 Coordinate:

3r:17578740-17578994 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-7.7 -7.7 -7.7 -7.0

Flybase annnotation

CDS [3r_17576175_17578739_+]; exon [3r_17575973_17578739_+]; CDS [3r_17578995_17579261_+]; exon [3r_17578995_17579261_+]; intron [3r_17578740_17578994_+]

No Repeatable elements found

mature
  1. 3l:9328004-9328018 -
  2. dsi_20312  3r:17578935-17578949 +
star
  1. 2r:19763840-19763854 -
  2. 3r:3193112-3193126 +
  3. 3r:13111104-13111118 -
  4. dsi_20312  3r:17578883-17578897 +
  5. 3r:22902454-22902468 +
  6. 4:93601-93615 +
  7. siII:14867-14881 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCAGCAAGAGTGTATTGGCTCCCATGGCATCCAAGTCCAACATTGCAATGGTAGGTGAACTTAAAAATCGTCGATAAATTGCTATACCTCTTAAGGGGCAAATTACCAACTTTATTTCTTCGAAAAATTATTTTTTTCCTTGCGTCTGATAGTTCACTTTATAAGATCTACGAAATAAAATCTTGGATTATTTTTTTTAAGAAATAAATGTGGAAATGTCCCTTAGAATATATTCGGTTGCCGAAAAAAGCTTTCGCACCTTTGGCAAATTTGTTCATTCCACACTCTTATCCTAATCCCCAAAGCCAGAAGAAAACAATGATCAGGATGAACTGCCCTTGGTGGTTCACAATCG
*************************************************************************************************************************************************************************************************..................((.........................((.(((((.....)))))))))*********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
..........................................................................TAAATTACTAGTCCTCTTAAGG................................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0
......................................................GTCAAGTTAACAATCGTCGAT........................................................................................................................................................................................................................................................................................ 21 3 3 0.67 2 0 0 0 2 0 0
..................................................GTAGTTGAACTTAAAAA................................................................................................................................................................................................................................................................................................ 17 1 2 0.50 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................AAAAGCTTTCGCACC............................................................................................... 15 0 2 0.50 1 0 1 0 0 0 0
................................................................................................................................................................................................TTTTTTAAAAAAAAAATGTGGA............................................................................................................................................. 22 2 2 0.50 1 1 0 0 0 0 0
.........................................................................ATAAGTCGCTATACCTCTGA...................................................................................................................................................................................................................................................................... 20 3 3 0.33 1 0 1 0 0 0 0
................................................................................................................................................................................................................TGTGGAACTGTCCCTCAGACT.............................................................................................................................. 21 3 3 0.33 1 1 0 0 0 0 0
.................................................................................................................................................................................................TTTTTAAGAAATAAA................................................................................................................................................... 15 0 7 0.29 2 0 2 0 0 0 0
......................................................................................................................................................................................TGGGATTATTTTTTTTA............................................................................................................................................................ 17 1 9 0.22 2 0 0 0 0 2 0
.......................................................TCAAGTTAACAATCGTCGAT........................................................................................................................................................................................................................................................................................ 20 3 5 0.20 1 0 0 0 1 0 0
...............................................................................................................................................................................................................TTGTGGAACTGTCCCTCAGA................................................................................................................................ 20 3 6 0.17 1 1 0 0 0 0 0
.....................................................................................................................................................................................ATTGGATTAGTTTTTTAAAGAA........................................................................................................................................................ 22 3 8 0.13 1 0 0 0 0 1 0
............................................GCTATGGTAGGTGAA........................................................................................................................................................................................................................................................................................................ 15 1 9 0.11 1 0 1 0 0 0 0
....................................................................................................................................TTTTTCCATGCGTCTGAA............................................................................................................................................................................................................. 18 2 10 0.10 1 0 1 0 0 0 0
........................................CGTTGCAATGGTAGGGGAT........................................................................................................................................................................................................................................................................................................ 19 3 12 0.08 1 0 0 1 0 0 0
.....................................................................................................................................................................................CTCGGATTATTTTTT............................................................................................................................................................... 15 1 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................................................ATTATTATTTTTAAGAAA....................................................................................................................................................... 18 1 20 0.05 1 0 0 1 0 0 0
..............................................................................................................TTTAGTTCTTCGAAAAAA................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 1 0 0 0
......................................................................................................................................TTACCTAGCGTCTGAT............................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

GGTCGTTCTCACATAACCGAGGGTACCGTAGGTTCAGGTTGTAACGTTACCATCCACTTGAATTTTTAGCAGCTATTTAACGATATGGAGAATTCCCCGTTTAATGGTTGAAATAAAGAAGCTTTTTAATAAAAAAAGGAACGCAGACTATCAAGTGAAATATTCTAGATGCTTTATTTTAGAACCTAATAAAAAAAATTCTTTATTTACACCTTTACAGGGAATCTTATATAAGCCAACGGCTTTTTTCGAAAGCGTGGAAACCGTTTAAACAAGTAAGGTGTGAGAATAGGATTAGGGGTTTCGGTCTTCTTTTGTTACTAGTCCTACTTGACGGGAACCACCAAGTGTTAGC
***********************************************************************************************..................((.........................((.(((((.....)))))))))************************************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
....................................................................................................................................................................................................................................................................................TAAGGTGTGAGAATAGGATTA.......................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................AGCGTGGAAACCGTT....................................................................................... 15 0 3 0.33 1 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................GGAATCACCAAATGTTAG. 18 2 5 0.20 1 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................................................AGCGTGGAAACCGTTG...................................................................................... 16 1 11 0.18 2 0 2 0 0 0 0 0
...................................................................................................................................AAAAAAGGAAGGTAGACTA............................................................................................................................................................................................................. 19 2 6 0.17 1 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................TTGTTAATAGGCTTACTTGA..................... 20 3 7 0.14 1 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................................................TAAACATGTCAGGTGTGA..................................................................... 18 2 8 0.13 1 0 0 1 0 0 0 0
.............................................................................................................................................................AAATATACGAGATGCATTATT................................................................................................................................................................................. 21 3 8 0.13 1 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................................................................AAGGTCTGACAATAGAATTA.......................................................... 20 3 14 0.07 1 0 0 1 0 0 0 0
....................GGGTACCGTAGGTTG................................................................................................................................................................................................................................................................................................................................ 15 1 16 0.06 1 0 1 0 0 0 0 0
............................TAGGTTCAGGTAGTA........................................................................................................................................................................................................................................................................................................................ 15 1 16 0.06 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................TGGCAATTGGATTAGGGGT..................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1

Generated: 04/23/2015 at 11:43 PM