dsi_2031

CDS [x_12570138_12570722_+]; exon [x_12570138_12570977_+]; intron [x_12569563_12570137_+]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AAAGAGTCTTGATAGATAAGATAAGATGCGTATCGGTCGAAAGAGGAAGTATCAGTCACAGCGAGATTTCAAGGGGAGATATGAGGGATTTACAATTGAAGTTCTCAAGGGAAGGCGACTAAGTCCAGAGCACTTTGTTGTTAATTATTTGCCAGCTTGGAGAAACATGTCTCTAATTCCGCCATCCATTCATTGAACAGATGCCCCAGCTGCAGAAGCCCGCTCCCGCATTCGCCGGCACCGCCGTCGT ************************************************................((.(((..(((...(((..(((.............(((((..(((..(((((.(((......((((...)))).....))).)))))..))).))))).............)))..)))...))).)))...))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M053 female body	O001 Testis	O002 Head	M025 embryo	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	SRR902009 testis
........................GATGCGTCTCGGTCG...................................................................................................................................................................................................................	15	1	2	5.50	11	8	2	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................AGAAGCCCGCTCCCGCATTCGCCGGC...........	26	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................GGTCGATAGAGGAAGTA.......................................................................................................................................................................................................	17	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................AGCCCGCTCCCGCATTCGCC..............	20	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
................................................GTATCAGTCACAGCGAGA........................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.......CTTGATAGATAAGATAAG.................................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................TGCCCCAGCTGCAGAAGCCCGCTCC........................	25	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..............................................AAGTATCAGTCACAGCGAGAT.......................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.....................TAAGATGCGTATCGGTCGAAAGAGGA...........................................................................................................................................................................................................	26	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................TCCGCCATCCATTCATTGAACAGA.................................................	24	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................AGAAGCCCGCTCCCGCATTCGCCG.............	24	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................GCAAGGGAAGGCGACT..................................................................................................................................	16	1	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................TCACAGCCAGATTTTATGGGGA.............................................................................................................................................................................	22	3	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0
.......................................................TCACAGCCAGATTTGAAGGGAA.............................................................................................................................................................................	22	3	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0
........................GATGCGTCTCGGTCGGA.................................................................................................................................................................................................................	17	2	8	0.38	3	1	1	0	0	0	0	0	0	0	1	0
.......................CGATGCGTCTCGGTCG...................................................................................................................................................................................................................	16	2	20	0.35	7	7	0	0	0	0	0	0	0	0	0	0
.......................................................................................................CTGTAGGGAAGGCGACT..................................................................................................................................	17	2	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
.........................................AGAGGAAGTAACAGTC.................................................................................................................................................................................................	16	1	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0
................................TCTTTCGAAAGAGGAAGT........................................................................................................................................................................................................	18	2	8	0.13	1	0	0	1	0	0	0	0	0	0	0	0
..................AGATAACATGCATATCGG......................................................................................................................................................................................................................	18	2	14	0.07	1	0	0	0	0	0	0	1	0	0	0	0
........................GATGCGTCTCGGTCGGATG...............................................................................................................................................................................................................	19	3	15	0.07	1	0	0	0	0	0	0	0	1	0	0	0
............................................................................AGATATGAGGGTTGTA..............................................................................................................................................................	16	2	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.................................CGGACTGAAGAGGAAGTAT......................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
........................GATGCGTCTCGGTCGG..................................................................................................................................................................................................................	16	2	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................CGATGCGTCTCGGTCGGA.................................................................................................................................................................................................................	18	3	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................TAGCTTGGAGAAACGTGTTT..............................................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1
.....................................................................................................GCCGCAAGGGAAGGCGACT..................................................................................................................................	19	3	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

TTTCTCAGAACTATCTATTCTATTCTACGCATAGCCAGCTTTCTCCTTCATAGTCAGTGTCGCTCTAAAGTTCCCCTCTATACTCCCTAAATGTTAACTTCAAGAGTTCCCTTCCGCTGATTCAGGTCTCGTGAAACAACAATTAATAAACGGTCGAACCTCTTTGTACAGAGATTAAGGCGGTAGGTAAGTAACTTGTCTACGGGGTCGACGTCTTCGGGCGAGGGCGTAAGCGGCCGTGGCGGCAGCA ************************************************................((.(((..(((...(((..(((.............(((((..(((..(((((.(((......((((...)))).....))).)))))..))).))))).............)))..)))...))).)))...))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	M024 male body	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	M053 female body	M023 head	GSM343915 embryo
.............................................................................................................................................................................AGTTATGCGGTAGGTAAGTAA........................................................	21	3	2	4.50	9	8	0	0	0	0	1	0	0	0	0
............................................................................................................CCCTTCCGCTGATTCAGGTCT.........................................................................................................................	21	0	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................TCAGGTCTCGTGAAACAACAA............................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................AAAGTTCCCTTCCGCTGA..................................................................................................................................	18	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................ACTTGTCTACGGGGTCGACGT....................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
............................................................................................................................GGTCTTGCGAAACAACAATTGA........................................................................................................	22	3	2	0.50	1	0	0	0	0	0	0	0	1	0	0
...........................................................................................................TCCCTTCCGCTGGTTCCG.............................................................................................................................	18	2	4	0.25	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................CAGAGGTTAAGGCGGTAGA...............................................................	19	2	5	0.20	1	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................AAGTAACTCATCTACGGGGC..........................................	20	3	6	0.17	1	0	0	0	0	0	0	1	0	0	0
...................................................................................................................GCTGATTCCGGTCTC........................................................................................................................	15	1	7	0.14	1	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................GCGGTAGGTAAGTAAGGGGT...................................................	20	3	15	0.13	2	2	0	0	0	0	0	0	0	0	0
....................................AGCCTTCTCCTGCATAG.....................................................................................................................................................................................................	17	2	8	0.13	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................ACGGGGTCGACGGCTTCAG..............................	19	2	9	0.11	1	0	0	0	0	0	0	0	0	0	1
.............................................................................................................................................................................AGTTATGCGGTAGGTAAGTA.........................................................	20	3	9	0.11	1	1	0	0	0	0	0	0	0	0	0
.......................TCTAGGTCTAGCCAGCTTT................................................................................................................................................................................................................	19	3	12	0.08	1	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................GTTATGCGGTAGGTAAGTAA........................................................	20	3	14	0.07	1	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................AGGCGGTAGGTAAGTAAGGG.....................................................	20	3	15	0.07	1	1	0	0	0	0	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	x:12569938-12570187 +	dsi_2031	AAA---GAGTC---TTGATAGA----TAAGATAAGATGCG----TATCGGTCGAAAGAGGAAGTAT----------------------C--AGTCA-CAGCGAGATTTC-AAGG--GGA-GATATGAGGGATT-TACAATTGAAGTTCTCAAGGGAAGGCGACTA---AG----T------CCAGAGCACTTTGTT---GTTA--ATTA-T-------------------TTGCCAGCTTGGAGA-AACATGTCTCTAATTCC-----------G--------CCATCCATTC-A--T-TGAACAGATGCCCCAGCTGCAGAAGCCCGCTCCCGCATTCGCCGGCACCGCCGTCGT
droSec2	scaffold_21:980129-980378 +		AAA---GAGTC---TTGATAGA----TAAGATAAGATGCG----TATCGGTCGAAAGAGGAAGTAT----------------------C--AGTCA-CAGCGAGATTTC-AAGG--GGA-GATATGAGGGATT-TACAATTGAAGTTCTCAAGGGAAGGCGACTA---AG----T------CCAGAGCACTTTGTT---GTTA--ATTA-T-------------------TCACTAGCTTGGATA-AACGTGTCTCTAATTCC-----------T--------CCATCCATAC-A--T-TGAACAGATGCCCCAGCTGCAGAAGCCCGCTCCCGCATTCGCCGGCACCGCCGTCGT
dm3	chrX:13224955-13225204 +		AAA---AAATC---TTGATAGA----TAAGATAAGATGCG----TATCGGTCGAAAGAGGAAGTAT----------------------C--AGTCA-CAGCGAGATTTC-AAGG--GGACCATATGAGGGATT-TACAATTGAAGTTCTCAAAAGAAGGCGACTA---AG----T------TCAGAGCACTTTGTT---GTTA--ATTA-T-------------------TCGCTAGTTTGAAGA-AACATGTCTCTAATTC------------G--------CCATCCATTC-A--T-TGAACAGATGCCCCAGCTACAGAAGCCCGCTCCCGCATTCGCCGGCACCGCCGTCGT
droEre2	scaffold_4690:13647529-13647734 -		AAC---GAATC---TTGATAGA----TAAGATTAG--GAG----TATCGGTCGAAAGAGGAAGTATT---------------------C--AGGCA-TAGATGTATTTT-AAGGGGGGA-GATATGAGGGATT-TACAAGTCAAGTTCTCCAGAGAAGCTAAATA---AG--------------------------------------------------------------------------------TGTCTCTAATTC------------G--------CAATCCATTA-A--T-TGAACAGATGCCCCAGCTACAGAAGCCCGCTCCCTCATTCTCCGGCACCGCCGTCGT
droYak3	X:7503483-7503741 +		AAG---GAATC-TCTTGATAGAGAGATTAGATT----ACGAAATTATGAGGCGAAAGAGGAAATAT----------------------C--AGTCA-TAGGGAGATTTT-AAAG--GGA-GATATGTGGGATT-TTCCATTTTAGTTCTTAAGTGAAGGTGAATA---AG-----------------TACTACGCCAGTGTTA--ATTT-C-------------------TCACTAACTTGAAGA-AACGTGTTCCTAATTCC------------CCAACCATTCATCCATCC-A--C-TTAATAGATGCCCCAGCTACAGAAGCCCGCTCCCGGATTCGCCGGCACCGCCGTCGT
droEug1	scf7180000408958:379986-380093 -		G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC--ATTT-T-------------------ACGCCTGTTTAGAGA-GCAGCTTTTAAAATTTC----------------------TTACCTCT-A--T-TTCACAGATGCCCCAGCTACAGAAGCCCGCTCCCGAATTCTCCGGCACCGCCGTCGT
droBia1	scf7180000298389:1191791-1192066 +		AAA-----------------------TGAAATAAAAT---------TCTCTCAAAGAAGGAACTATTACCAACTAACAATCACTAACTGGAGGAA---GGGGCGATTTT-AAAT--GAT-GATAGGTGGGATT-TTTAGTTCAAGCCTTAGATAGTGGA--ACTC-TGACTAGTTGGCTAGCGAAAGCACCGTGCC---GTCC--ATTT-TGTTTCGAG--AA-----TGTCGCCATCTTGAGCA-GAGATG--ACTGATCT------------GCAA---CT--CCCGT-TCTG--A-TCCGCAGATGCCCCAGCTCCAGAAGACCGCCCCCGAGTTCTCCGGCACCGCCGTCGT
droTak1	scf7180000414740:26312-26371 +		C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--C-TTCACAGATGCCCCAGCTACAGAAGAGCGCCCCCGAATTCTCCGGCACCGCCGTCGT
droEle1	scf7180000491001:1795721-1795993 -		AATA-TGAGTATTAGTGTTAGACAGGCAAGATTATAATAA---TTTTGTATAGTTATAGGCAGCTT----------------------T--AGCCGGAAACTCGATTTT-AACA--GGA-GGTACGGGGGATTTTTCTAATCAAGTTCTTGAGATAAGGAGACTT---A-------------CAAAGCACCATGTTTTT---GCTATTA-C-------------------TCGTTCCTTTAGAGT-GGCTT--TTTCGACTTTTTTGTGATGTG-TAA---AC----CCT-TTTGAACCCTTACAGATGCCCCAGCTACAGAAGCCAGCTCCCGAATTCTCCGGCACCGCCGTCGT
droRho1	scf7180000779333:1022901-1023176 +		AATTGAAAGTA---ATTAAAAA----TTAAATAATATACT----AAT-------AATAAGTAGT------------------------CAAGATAA-TAG--CGATTTTGAAAT--GGA-GATACGGGGACTT-TTCTATTCAAGTTTTTAAGATAAGGATACTTTTGGGTAG-TGACCCG-TAAAGCACCGTGAATTT---ACTTTTACTATTCAGAGTTAATTTTTTTTTGCCATTTTTGAGA-CCTA--TTTTTGATTT------------GAAA----C---CCTGTTC-C--G-CTTACAGATGCCCCAGCTGCAGAAGCCCGCTCCCGAATTCTCCGGCACCGCCGTCGT
droFic1	scf7180000454050:1214231-1214361 +		G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCACCATGTTTTTGA--CTATTT-T-------------------TATCCAATTT-AAGACACAA--TTTTTAACTC------------GTAATCCCCCCTGTTTTGC-C--C-TATTTAGATGCCCCAGCTGCAGAAACCCGCTCCCGAGTTCGCCGGCACCGCCGTGGT
droKik1	scf7180000302696:896446-896514 -		C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCCCTTT-A--C-CTTGCAGATGCCCCAGCTGCAGAAACAAGCTCCCGAATTCTCCGGCACCGCCGTCGT
droAna3	scaffold_13335:932513-932567 -		A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGATGCCCCAGCTACAGAAGCCCGCTCCCGAATTCTCCGGCACCGCCGTCGT
droBip1	scf7180000395498:214861-214927 +		A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCCTC-T--T-CTTATAGATGCCCCAGCTACAGAAGCCCGCTCCCGAATTCTCCGGCACCGCCGTCGT
dp5	XL_group1a:6022781-6022833 -		---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATGCCCCAACTGCAGAAATCCGCACCCGAGTTCGCCGGCACCGCCGTGGT
droPer2	scaffold_25:1350132-1350184 +		---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATGCCCCAACTGCAGAAATCCGCACCCGAGTTCGCCGGCACCGCCGTGGT
droWil2	scf2_1100000004909:6570515-6570568 -		A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGATGCCTCAATTGCAGAAGCCCGCTCCCAACTTCTCCGGAACTGCTGTCGT
droVir3	scaffold_13042:848029-848081 -		---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATGCCCCAAATCCAGAAGGCCGCTCCCGATTTCTCCGGCACCGCCGTGGT
droMoj3	scaffold_6328:2842000-2842051 -		----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATGCCGCAACTTCAAAAACCCGCACCCGAATTCTCCGGTACCGCCGTGGT
droGri2	scaffold_15081:1232842-1232894 -		---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATGCCAAAACTTCAGAAGCCAGCACCCGAATTCTCCGGCACCGCCGTGGT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AAA---GAGTC---TTGATAGA----TAAGATAAGATGCG----TATCGGTCGAAAGAGGAAGTAT----------------------C--AGTCA-CAGCGAGATTTC-AAGG--GGA-GATATGAGGGATT-TACAATTGAAGTTCTCAAGGGAAGGCGACTA---AG----T------CCAGAGCACTTTGTT---GTTA--ATTA-T-------------------TTGCCAGCTTGGAGA-AACATGTCTCTAATTCC-----------G--------CCATCCATTC-A--T-TGAACAGATGCCCCAGCTGCAGAAGCCCGCTCCCGCATTCGCCGGCACCGCCGTCGT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................................................................................................................................................................................................................................................................................AGAAGCCCGCTCCCGCATTCGCCGGC...........	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................AGCCCGCTCCCGCATTCGCC..............	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................GTAT----------------------C--AGTCA-CAGCGAGA...........................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..........C---TTGATAGA----TAAGATAAG.................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................TGCCCCAGCTGCAGAAGCCCGCTCC........................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................AAGTAT----------------------C--AGTCA-CAGCGAGAT..........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...............................TAAGATGCG----TATCGGTCGAAAGAGGA.......................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................TCC-----------G--------CCATCCATTC-A--T-TGAACAGA.................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AGAAGCCCGCTCCCGCATTCGCCG.............	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AAA---GAGTC---TTGATAGA----TAAGATAAGATGCG----TATCGGTCGAAAGAGGAAGTAT----------------------C--AGTCA-CAGCGAGATTTC-AAGG--GGA-GATATGAGGGATT-TACAATTGAAGTTCTCAAGGGAAGGCGACTA---AG----T------CCAGAGCACTTTGTT---GTTA--ATTA-T-------------------TCACTAGCTTGGATA-AACGTGTCTCTAATTCC-----------T--------CCATCCATAC-A--T-TGAACAGATGCCCCAGCTGCAGAAGCCCGCTCCCGCATTCGCCGGCACCGCCGTCGT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................................................................................................................................................................................................................................................................................................................AGCCCGCTCCCGCATTCGCCG.............	21	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................GCAGAAGCCCGCTCCCGC.....................	18	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................GCCCCAGCTGCAGAAGCCCG............................	20	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................CGCTCCCGCATTCGCCGGCAC.........	21	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................TCCCGCATTCGCCGGCACCGCCGTC..	25	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................................................................................................TGCAGAAGCCCGCTCCCGCA....................	20	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................CCGCATTCGCCGGCACCGCCGT...	22	1	1.00	1	0	0	1	0

dm3

AAA---AAATC---TTGATAGA----TAAGATAAGATGCG----TATCGGTCGAAAGAGGAAGTAT----------------------C--AGTCA-CAGCGAGATTTC-AAGG--GGACCATATGAGGGATT-TACAATTGAAGTTCTCAAAAGAAGGCGACTA---AG----T------TCAGAGCACTTTGTT---GTTA--ATTA-T-------------------TCGCTAGTTTGAAGA-AACATGTCTCTAATTC------------G--------CCATCCATTC-A--T-TGAACAGATGCCCCAGCTACAGAAGCCCGCTCCCGCATTCGCCGGCACCGCCGTCGT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................................................................................................................................AGGCGACTA---AG----T------TCAGAG.........................................................................................................................................................................	18	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................CGCATTCGCCGGCACCGCCGT...	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................TCCCGCATTCGCCGGCACCGCCGTC..	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AGAAGCCCGCTCCCGCATTCGCCGGCA..........	27	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................TCA-CAGCGAGATTTC-AAGG--GG..............................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................CCCGCTCCCGCATTCGCCGGC...........	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................ATGAGGGATT-TACAATTGAAG...................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TGCG----TATCGGTCGAAAGAGGAAG.....................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................AAAGAAGGCGACTA---AG----T------TCAGAG.........................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................CTACAGAAGCCCGCTCCC.......................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................CGAAAGAGGAAGTAT----------------------C--AGTC.....................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................GATAAGATGCG----TATCGGTCGAAAG...........................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AAC---GAATC---TTGATAGA----TAAGATTAG--GAG----TATCGGTCGAAAGAGGAAGTATT---------------------C--AGGCA-TAGATGTATTTT-AAGGGGGGA-GATATGAGGGATT-TACAAGTCAAGTTCTCCAGAGAAGCTAAATA---AG--------------------------------------------------------------------------------TGTCTCTAATTC------------G--------CAATCCATTA-A--T-TGAACAGATGCCCCAGCTACAGAAGCCCGCTCCCTCATTCTCCGGCACCGCCGTCGT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.......................................................................................................................................ACAAGTCAAGTTCTCCAGAT.........................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................ATGCCCCAGCTACAGAAGCCCG............................	22	1	1.00	1	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GCTCCCTCATTCTCCGGCAC.........	20	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................CCCGCTCCCTCATTCTCCGGCAC.........	23	1	1.00	1	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................CGCTCCCTCATTCTCCGGC...........	19	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................AAGCCCGCTCCCTCATTCTCCGGC...........	24	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................TA-A--T-TGAACAGATGCCCCAG.........................................	20	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CCTCATTCTCCGGCACCGC......	19	1	1.00	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................TCCCTCATTCTCCGGCACCGC......	21	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................ATGCCCCAGCTACAGAAGCCC.............................	21	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................CTCCCTCATTCTCCGGCACCGC......	22	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................TCCCTCATTCTCCGGCACCGCC.....	22	1	1.00	1	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................CTCATTCTCCGGCACCGCCGTC..	22	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................ATGCCCCAGCTACAGAAGCCCGC...........................	23	1	1.00	1	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................CCCTCATTCTCCGGCACCGC......	20	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................CCCCAGCTACAGAAGCCCG............................	19	1	1.00	1	0	0	0	1	0	0	0

droYak3

AAG---GAATC-TCTTGATAGAGAGATTAGATT----ACGAAATTATGAGGCGAAAGAGGAAATAT----------------------C--AGTCA-TAGGGAGATTTT-AAAG--GGA-GATATGTGGGATT-TTCCATTTTAGTTCTTAAGTGAAGGTGAATA---AG-----------------TACTACGCCAGTGTTA--ATTT-C-------------------TCACTAACTTGAAGA-AACGTGTTCCTAATTCC------------CCAACCATTCATCCATCC-A--C-TTAATAGATGCCCCAGCTACAGAAGCCCGCTCCCGGATTCGCCGGCACCGCCGTCGT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................................................................................................................................................................................................................CAGAAGCCCGCTCCCGGATTCGCC..............	24	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................AGCCCGCTCCCGGATTCGC...............	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................TCCCGGATTCGCCGGCACCGCCGC...	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................GATTTT-AAAG--GGA-GATATGTGG...................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................ACAGAAGCCCGCTCCCGGATTC.................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................ATTCGCCGGCACCGCCGTCG.	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TACAGAAGCCCGCTCCCGGATTCGCCGG............	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................CCGCTCCCGGATTCGCCGGCAC.........	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................TTAGTTCTTAAGTGAAGGTGA..................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................AGCTACAGAAGCCCGCTCCCGGATT..................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................AGCTACAGAAGCCCGCTCCCGG.....................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................CAGAAGCCCGCTCCCGGATT..................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................CGGATTCGCCGGCACCGCCG....	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................TCCCGGATTCGCCGGCACCGCCGTCG.	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................CGGATTCGCCGGCACCGCCGTC..	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................CCCGGATTCGCCGGCACCGCCGTC..	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................CAGCTACAGAAGCCCGCTCCCCT.....................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................ACAGAAGCCCGCTCCCGGATT..................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GATTCGCCGGCACCGCCGT...	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................ACAGAAGCCCGCTCCCGGATTCGCCGG............	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................GAAGCCCGCTCCCGGATTCGCCGGCAC.........	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................GATTTT-AAAG--GGA-GATATGTGGG..................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC--ATTT-T-------------------ACGCCTGTTTAGAGA-GCAGCTTTTAAAATTTC----------------------TTACCTCT-A--T-TTCACAGATGCCCCAGCTACAGAAGCCCGCTCCCGAATTCTCCGGCACCGCCGTCGT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAA-----------------------TGAAATAAAAT---------TCTCTCAAAGAAGGAACTATTACCAACTAACAATCACTAACTGGAGGAA---GGGGCGATTTT-AAAT--GAT-GATAGGTGGGATT-TTTAGTTCAAGCCTTAGATAGTGGA--ACTC-TGACTAGTTGGCTAGCGAAAGCACCGTGCC---GTCC--ATTT-TGTTTCGAG--AA-----TGTCGCCATCTTGAGCA-GAGATG--ACTGATCT------------GCAA---CT--CCCGT-TCTG--A-TCCGCAGATGCCCCAGCTCCAGAAGACCGCCCCCGAGTTCTCCGGCACCGCCGTCGT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--C-TTCACAGATGCCCCAGCTACAGAAGAGCGCCCCCGAATTCTCCGGCACCGCCGTCGT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AATA-TGAGTATTAGTGTTAGACAGGCAAGATTATAATAA---TTTTGTATAGTTATAGGCAGCTT----------------------T--AGCCGGAAACTCGATTTT-AACA--GGA-GGTACGGGGGATTTTTCTAATCAAGTTCTTGAGATAAGGAGACTT---A-------------CAAAGCACCATGTTTTT---GCTATTA-C-------------------TCGTTCCTTTAGAGT-GGCTT--TTTCGACTTTTTTGTGATGTG-TAA---AC----CCT-TTTGAACCCTTACAGATGCCCCAGCTACAGAAGCCAGCTCCCGAATTCTCCGGCACCGCCGTCGT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AATTGAAAGTA---ATTAAAAA----TTAAATAATATACT----AAT-------AATAAGTAGT------------------------CAAGATAA-TAG--CGATTTTGAAAT--GGA-GATACGGGGACTT-TTCTATTCAAGTTTTTAAGATAAGGATACTTTTGGGTAG-TGACCCG-TAAAGCACCGTGAATTT---ACTTTTACTATTCAGAGTTAATTTTTTTTTGCCATTTTTGAGA-CCTA--TTTTTGATTT------------GAAA----C---CCTGTTC-C--G-CTTACAGATGCCCCAGCTGCAGAAGCCCGCTCCCGAATTCTCCGGCACCGCCGTCGT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCACCATGTTTTTGA--CTATTT-T-------------------TATCCAATTT-AAGACACAA--TTTTTAACTC------------GTAATCCCCCCTGTTTTGC-C--C-TATTTAGATGCCCCAGCTGCAGAAACCCGCTCCCGAGTTCGCCGGCACCGCCGTGGT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCCCTTT-A--C-CTTGCAGATGCCCCAGCTGCAGAAACAAGCTCCCGAATTCTCCGGCACCGCCGTCGT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGATGCCCCAGCTACAGAAGCCCGCTCCCGAATTCTCCGGCACCGCCGTCGT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....................................................................................................................................................................................................................................................................................................................................CCGCTCCCGAATTCTCCGGCACCGC......	25	1	2.00	2	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................TGCCCCAGCTACAGAAGCC..............................	19	1	1.00	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................TCCCGAATTCTCCGGCACCGCCGTC..	25	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................ACAGAAGCCCGCTCCCGAATT..................	21	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GAATTCTCCGGCACCGCCGT...	20	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................ATGCCCCAGCTACAGAAGCCCGC...........................	23	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................CTACAGAAGCCCGCTCCCGA.....................	20	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GCTCCCGAATTCTCCGGCACCGC......	23	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................AGCCCGCTCCCGAATTCTCCGGCAC.........	25	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................CGCTCCCGAATTCTCCGGCAC.........	21	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................CTACAGAAGCCCGCTCCCGAATTCTCC..............	27	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................TCCCGAATTCTCCGGCACCGC......	21	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CCGAATTCTCCGGCACCGCCGTC..	23	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TACAGAAGCCCGCTCCCGA.....................	19	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GAATTCTCCGGCACCGCCGTC..	21	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................CCCGAATTCTCCGGCACCGC......	20	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................AAGCCCGCTCCCGAATTCTCCGGC...........	24	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GCTCCCGAATTCTCCGGCACC........	21	1	1.00	1	0	1	0	0	0	0

droBip1

A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCCTC-T--T-CTTATAGATGCCCCAGCTACAGAAGCCCGCTCCCGAATTCTCCGGCACCGCCGTCGT	Size	Hit Count	Total Norm	Total
No Reads

dp5

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATGCCCCAACTGCAGAAATCCGCACCCGAGTTCGCCGGCACCGCCGTGGT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................ATCCGCACCCGAGTTCGCCGGCAC.........	24	1	3.00	3	0	0	3	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................TCCGCACCCGAGTTCGCCGGCAC.........	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................ATCCGCACCCGAGTTCGCCGGC...........	22	1	2.00	2	0	0	1	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AGAAATCCGCACCCGAGTTCGCCGGCAC.........	28	1	2.00	2	0	0	2	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................CTGCAGAAATCCGCACCCGA.....................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................CGCACCCGAGTTCGCCGGCACC........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................ATCCGCACCCGAGTTCGCCGGCACCG.......	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................CCCGAGTTCGCCGGCACCGCCGT...	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................CACCCGAGTTCGCCGGCAC.........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................TCCGCACCCGAGTTCGCCGGC...........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GAGTTCGCCGGCACCGCCGT...	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AGAAATCCGCACCCGAGTTCGCCGGC...........	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GCACCCGAGTTCGCCGGCACCGCCGT...	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................ACCCGAGTTCGCCGGCACCGCCGTGGT	27	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GAGTTCGCCGGCACCGCCGTG..	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................AGTTCGCCGGCACCGCCGTGGT	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................GAAATCCGCACCCGAGTTCGCCGGC...........	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................CAACTGCAGAAATCCGCACCC.......................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................AACTGCAGAAATCCGCACCCGAG....................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................CGAGTTCGCCGGCACCGCC.....	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATGCCCCAACTGCAGAAATCCGCACCCGAGTTCGCCGGCACCGCCGTGGT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................................................................................................................................................................................................................................................................AACTGCAGAAATCCGCACCCGA.....................	22	1	11.00	11	11	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GCCCCAACTGCAGAAATC..............................	18	1	4.00	4	4	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................ATGCCCCAACTGCAGAAATCCGCACCCGG.....................	29	1	4.00	4	4	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................AACTGCAGAAATCCGCACCCGAGTT..................	25	1	4.00	4	4	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................CAACTGCAGAAATCCGCACC........................	20	1	3.00	3	3	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................AACTGCAGAAATCCGCACC........................	19	1	3.00	3	3	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................AACTGCAGAAATCCGCACCCGG.....................	22	1	3.00	3	3	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................TGCCCCAACTGCAGAAATCCGCACCCGA.....................	28	1	3.00	3	3	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CCAACTGCAGAAATCCGCACCCGA.....................	24	1	3.00	3	3	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................AATCCGCACCCGAGTTCGCCGGC...........	23	1	2.00	2	2	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................ATCCGCACCCGAGTTCGCCGGCAC.........	24	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................CCCCAACTGCAGAAATCCG............................	19	1	2.00	2	2	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................CAACTGCAGAAATCCGCACCCGA.....................	23	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CCAACTGCAGAAATCCGCACCCGG.....................	24	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CCAACTGCAGAAATCCGCACCC.......................	22	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................CCCCAACTGCAGAAATCCGCACCCGA.....................	26	1	2.00	2	2	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................CACCCGAGTTCGCCGGCAC.........	19	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................CCCCAACTGCAGAAATCCGCACCC.......................	24	1	2.00	2	2	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................AACTGCAGAAATCCGCACCCG......................	21	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CCAACTGCAGAAATCCGCACCCGAGTT..................	27	1	2.00	2	2	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................AACTGCAGAAATCCGCACCCGAGTTCGCC..............	29	1	2.00	2	2	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................CGAGTTCGCCGGCACCGCCGT...	21	1	1.00	1	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................GTTCGCCGGCACCGCCGTGG.	20	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................GTTCGCCGGCACCGCCGTG..	19	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................TGCCCCAACTGCAGAAATCCGCACCCGG.....................	28	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GCCCCAACTGCAGAAATCCGCACCC.......................	25	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GCACCCGAGTTCGCCGGC...........	18	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................ATCCGCACCCGAGTTCGCCGGCACCGCC.....	28	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................GCCCCAACTGCAGAAATCCGCACCCGA.....................	27	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................AAATCCGCACCCGAGTTCGCCGGC...........	24	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................ATGCCCCAACTGCAGAAATC..............................	20	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................CCCAACTGCAGAAATCCGCACCC.......................	23	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................CAACTGCAGAAATCCGCACCCGAG....................	24	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CCGAGTTCGCCGGCACCGCC.....	20	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................ATCCGCACCCGAGTTCGCCGGC...........	22	1	1.00	1	1	0	0	0	0	0

droWil2

A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGATGCCTCAATTGCAGAAGCCCGCTCCCAACTTCTCCGGAACTGCTGTCGT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................................................................................................................................................................................................AATTGCAGAAGCCCGCTCCCA......................	21	1	2.00	2	0	0	1	1	0
...........................................................................................................................................................................................................................................................................................................................................CCAACTTCTCCGGAACTGC......	19	1	2.00	2	0	0	0	2	0
.............................................................................................................................................................................................................................................................................................................................................AACTTCTCCGGAACTGCTGTC..	21	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................CTCAATTGCAGAAGCCCGCTCCC.......................	23	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................CTCAATTGCAGAAGCCCGCT..........................	20	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................GCCTCAATTGCAGAAGCCCGCTCCC.......................	25	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................TGCAGAAGCCCGCTCCCAA.....................	19	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................ACTTCTCCGGAACTGCTGT...	19	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................CTCAATTGCAGAAGCCCGCTCCCAA.....................	25	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................TCCCAACTTCTCCGGAACTGCTG....	23	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................CTCCGGAACTGCTGTCGT	18	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................TGCAGAAGCCCGCTCCCAACTTCTCCGG............	28	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................CTCAATTGCAGAAGCCCGCTC.........................	21	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................TGCAGAAGCCCGCTCCCAACTTCTCCG.............	27	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................CCCAACTTCTCCGGAACTGCTG....	22	1	1.00	1	0	0	1	0	0

droVir3

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATGCCCCAAATCCAGAAGGCCGCTCCCGATTTCTCCGGCACCGCCGTGGT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.............................................................................................................................................................................................................................................................................................................................CCAGAAGGCCGCTCCCGATTTCTCC..............	25	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................AAGGCCGCTCCCGATTTCTCCGGCAC.........	26	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................CAGAAGGCCGCTCCCGATTTCTCCGGC...........	27	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................ATGCCCCAAATCCAGAAGGCCGCTCCCGATA...................	31	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
...............................................................................................................................................................................................................................................................................................................................AGAAGGCCGCTCCCGATTTCTCCGGCAC.........	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................GAAGGCCGCTCCCGATTTCTCC..............	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................CCAGAAGGCCGCTCCCGATTTCT................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GATTTCTCCGGCACCGCCGTGGT	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CCAAATCCAGAAGGCCGCTCCC.......................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................CAGAAGGCCGCTCCCGAT....................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CCAAATCCAGAAGGCCGCTCC........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GCCCCAAATCCAGAAGGCC.............................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TTTCTCCGGCACCGCCGTGGT	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................ATGCCCCAAATCCAGAAGGCCGCT..........................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................TCCCGATTTCTCCGGCACCGC......	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GCTCCCGATTTCTCCGGCACCGC......	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................CAGAAGGCCGCTCCCGATTTCTCC..............	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TCCAGAAGGCCGCTCCCGAT....................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GCCCCAAATCCAGAAGGCCGCTCC........................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................GGCCGCTCCCGATTTCTCCGGCAC.........	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................CAAATCCAGAAGGCCGCTCCCGATTTCT................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................AAGGCCGCTCCCGATTTCTCC..............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATGCCGCAACTTCAAAAACCCGCACCCGAATTCTCCGGTACCGCCGTGGT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................................................................................................................................................................................................................................AACTTCAAAAACCCGCACCCGAATT..................	25	1	1.00	1	1	0	0	0	0	0

droGri2

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGATGCCAAAACTTCAGAAGCCAGCACCCGAATTCTCCGGCACCGCCGTGGT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...............................................................................................................................................................................................................................................................................................................................................ATTCTCCGGCACCGCCGTGG.	20	1	1.00	1	1	0

dsi_2031

x:12569988-12570137 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads